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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC117
Library CF
(Link to library)
Clone ID CFC117
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFC117F
(Link to Original site)
Representative DNA sequence 
>CFC117 (CFC117Q) /CSM/CF/CFC1-A/CFC117Q.Seq.d/
AGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAAATT
TGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAACCAAAAAAAAAAXX
XXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
vfcsysn*ISIQLKKVKIKFVKSICNKN**fkkkkpkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
silfifklnintikks*n*ickinl*qklvi*kkktkkk---


Frame B:
vfcsysn*ISIQLKKVKIKFVKSICNKN**fkkkkpkk---


Frame C:
yfvhiqikyqyn*kklklnl*nqfvtktsnlkkknqkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH486 (SLH486Q) /CSM/SL/SLH4-D/SLH486Q.Seq.d/                        145   2e-34
SLF502 (SLF502Q) /CSM/SL/SLF5-A/SLF502Q.Seq.d/                        145   2e-34
SLF326 (SLF326Q) /CSM/SL/SLF3-B/SLF326Q.Seq.d/                        145   2e-34
SHL201 (SHL201Q) /CSM/SH/SHL2-A/SHL201Q.Seq.d/                        145   2e-34
SHG423 (SHG423Q) /CSM/SH/SHG4-A/SHG423Q.Seq.d/                        145   2e-34
SHF559 (SHF559Q) /CSM/SH/SHF5-C/SHF559Q.Seq.d/                        145   2e-34
SHD161 (SHD161Q) /CSM/SH/SHD1-C/SHD161Q.Seq.d/                        145   2e-34
SHC463 (SHC463Q) /CSM/SH/SHC4-C/SHC463Q.Seq.d/                        145   2e-34
SHA894 (SHA894Q) /CSM/SH/SHA8-D/SHA894Q.Seq.d/                        145   2e-34
SHA631 (SHA631Q) /CSM/SH/SHA6-B/SHA631Q.Seq.d/                        145   2e-34
own update 2002.11.16
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    80   6e-28  2
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    80   1e-25  2
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    80   8e-12  1
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.    78   3e-11  1
AC024960|AC024960.2 Homo sapiens chromosome 18 clone RP11-431C11 map 18, WORKING DRAFT SEQUENCE, 23 unordered pieces.    34   0.016  4
AL161576|AL161576.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 72.    40   0.020  5
AX196294|AX196294.1 Sequence 1 from Patent WO0151627.              38   0.033  4
BX322622|BX322622.9 Zebrafish DNA sequence from clone DKEYP-14D3 in linkage group 8.    36   0.033  5
BV025443|BV025443.1 S212P6456FC5.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site.    42   0.035  2
AC127429|AC127429.25 Medicago truncatula clone mth2-9o20, complete sequence.    34   0.052  6
dna update 2004. 4. 3
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 67,797,368
protein update 2009. 5.12
PSORT -
5' end seq. ID CFC117F
5' end seq. 
>CFC117F.Seq
AGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAAATT
TGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAACCAAAAAAAAAA--
--------
Length of 5' end seq. 118
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -