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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC101
Library CF
(Link to library)
Clone ID CFC101
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID CFC101F
(Link to Original site)
Representative DNA sequence 
>CFC101 (CFC101Q) /CSM/CF/CFC1-A/CFC101Q.Seq.d/
ATTAAATCATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAG
TTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAC
CNAAAAAAAAAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
LNHCSILFIFKLNINTIKKS*n*ickinl*qklvi*kkktxkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
iksl*yfvhiqikyqyn*kklklnl*nqfvtktsnlkkknxkk---


Frame B:
LNHCSILFIFKLNINTIKKS*n*ickinl*qklvi*kkktxkk---


Frame C:
*iivvfcsysn*isiqlkkvkikfvksicnkn**fkkkkpkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLF326 (SLF326Q) /CSM/SL/SLF3-B/SLF326Q.Seq.d/                        170   3e-42
SHA483 (SHA483Q) /CSM/SH/SHA4-D/SHA483Q.Seq.d/                        170   3e-42
SFJ803 (SFJ803Q) /CSM/SF/SFJ8-A/SFJ803Q.Seq.d/                        170   3e-42
SFJ792 (SFJ792Q) /CSM/SF/SFJ7-D/SFJ792Q.Seq.d/                        170   3e-42
SFI660 (SFI660Q) /CSM/SF/SFI6-C/SFI660Q.Seq.d/                        170   3e-42
SFH694 (SFH694Q) /CSM/SF/SFH6-D/SFH694Q.Seq.d/                        170   3e-42
SFH594 (SFH594Q) /CSM/SF/SFH5-D/SFH594Q.Seq.d/                        170   3e-42
SFG208 (SFG208Q) /CSM/SF/SFG2-A/SFG208Q.Seq.d/                        170   3e-42
SFE832 (SFE832Q) /CSM/SF/SFE8-B/SFE832Q.Seq.d/                        170   3e-42
SFE258 (SFE258Q) /CSM/SF/SFE2-C/SFE258Q.Seq.d/                        170   3e-42
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.   103   2e-35  2
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    96   3e-33  2
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.   103   6e-19  1
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    80   9e-12  1
AL161576|AL161576.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 72.    40   0.033  5
BX322575|BX322575.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-283E2.    32   0.036  8
BV025443|BV025443.1 S212P6456FC5.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site.    42   0.043  2
AX196294|AX196294.1 Sequence 1 from Patent WO0151627.              38   0.049  4
AC148398|AC148398.3 Medicago truncatula clone mth2-24c23, WORKING DRAFT SEQUENCE, 2 ordered pieces.    32   0.051  7
BX322622|BX322622.9 Zebrafish DNA sequence from clone DKEYP-14D3 in linkage group 8.    36   0.054  5
dna update 2004. 4. 3
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 85,510,905
protein update 2009. 5.12
PSORT -
5' end seq. ID CFC101F
5' end seq. 
>CFC101F.Seq
ATTAAATCATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAG
TTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAC
CNAAAAAAAAA----------
Length of 5' end seq. 131
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -