CFB894
Library CF
(Link to library)
Clone ID CFB894
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFB894F
(Link to Original site)
Representative DNA sequence
>CFB894 (CFB894Q) /CSM/CF/CFB8-D/CFB894Q.Seq.d/
ATACAATTTAATTTATTAATTTTTTAACGGCAAAACTAAAAATAATTATTTATATTGTAA
TAATTTTTTTGTAGTAGTATCCAATTTTCTTTTGGATACGAAAAGGCGATTGCTTCATTT
TATCCACCTCCAGGTGATTTGCATCCCACTACTCATAATTTTTGGGCATGTAATAGTGTC
ATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAATAATGCCGGTATCTATGCAATT
TTCTCGACCGCCAATGAGATCATCGACGGTAATGAATACATGCTTCCACTATTTTATATT
GGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGATCACAGTAGACGAAACCATGTT
GATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCATTGGATGATTATGGTTACAGT
AACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAATTCAAAACTCAATTCAACTCA
TGGGATAACCTCGGTTTTGATCCACAGTATGATACTGCTTATCCAGATGAAAATGGTTTG
GGATGGGATATCCTTGCATCTTTTTATAATATGGATATCAATGCTCCATCTTTTAATATT
XXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
iqfnllif*rqn*k*lfil**FFCSSIQFSFGYEKAIASFYPPPGDLHPTTHNFWACNSV
INQNGGFGPLECNNAGIYAIFSTANEIIDGNEYMLPLFYIGRSTIDVRDRIADHSRRNHV
DNDFIVCYMRFPALDDYGYSNKVTPVEQALLHQFKTQFNSWDNLGFDPQYDTAYPDENGL
GWDILASFYNMDINAPSFN---


Translated Amino Acid sequence (All Frames)
Frame A:
iqfnllif*rqn*k*lfil**FFCSSIQFSFGYEKAIASFYPPPGDLHPTTHNFWACNSV
INQNGGFGPLECNNAGIYAIFSTANEIIDGNEYMLPLFYIGRSTIDVRDRIADHSRRNHV
DNDFIVCYMRFPALDDYGYSNKVTPVEQALLHQFKTQFNSWDNLGFDPQYDTAYPDENGL
GWDILASFYNMDINAPSFN---


Frame B:
ynliy*ffngktknnylycnnffvvvsnflldtkrrllhfihlqviciplliifghvivs
ltktvdsvhlnaimpvsmqfsrppmrsstvmntcfhyfiledpl*mfeiellitvdetml
imislcvicvsqhwmimvtvtk*hplnklsftnsklnsthgitsvlihsmilliqmkmvw
dgislhlfiiwismlhlli---


Frame C:
ti*finfltaklkiiiyiviifl**ypiffwirkgdcfilstsr*fashys*flgm**ch
*pkrwirst*mq*crylcnfldrq*dhrr**ihastilywkihyrcsr*nc*sq*tkpc*
**fhcvlyafpsig*lwlq*qsntr*tsspspiqnsiqlmg*prf*stv*yclsr*kwfg
mgypcifl*ygyqcsif*y---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFB894 (CFB894Q) /CSM/CF/CFB8-D/CFB894Q.Seq.d/ 1148 0.0
SFF170 (SFF170Q) /CSM/SF/SFF1-C/SFF170Q.Seq.d/ 1124 0.0
SFK243 (SFK243Q) /CSM/SF/SFK2-B/SFK243Q.Seq.d/ 1116 0.0
SFH254 (SFH254Q) /CSM/SF/SFH2-C/SFH254Q.Seq.d/ 1116 0.0
SFF824 (SFF824Q) /CSM/SF/SFF8-A/SFF824Q.Seq.d/ 1116 0.0
SFF507 (SFF507Q) /CSM/SF/SFF5-A/SFF507Q.Seq.d/ 1116 0.0
CHR880 (CHR880Q) /CSM/CH/CHR8-D/CHR880Q.Seq.d/ 1116 0.0
CHP572 (CHP572Q) /CSM/CH/CHP5-C/CHP572Q.Seq.d/ 1116 0.0
CHG883 (CHG883Q) /CSM/CH/CHG8-D/CHG883Q.Seq.d/ 1116 0.0
CHD331 (CHD331Q) /CSM/CH/CHD3-B/CHD331Q.Seq.d/ 1116 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL035476|AL035476.7 Plasmodium falciparum MAL4P3. 34 3e-04 10
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 38 0.001 7
AZ930073|AZ930073.1 479.dil58d12.s1 Saccharomyces kluyveri Saccharomyces kluyveri genomic clone 479.dil58d12.s1, DNA sequence. 40 0.002 2
AZ928704|AZ928704.1 479.dif17a08.s1 Saccharomyces kluyveri Saccharomyces kluyveri genomic clone 479.dif17a08.s1, DNA sequence. 40 0.004 2
AC116924|AC116924.3 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence. 40 0.004 7
AL096784|AL096784.2 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from MAL13P7. 38 0.006 4
AX344551|AX344551.1 Sequence 2 from Patent WO0200932. 36 0.007 9
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence. 36 0.009 9
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 32 0.013 10
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4. 32 0.016 11
dna update 2004. 4. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE017261_320(AE017261|pid:none) Picrophilus torridus DSM 9790, c... 36 0.72
CR380953_166(CR380953|pid:none) Candida glabrata strain CBS138 c... 35 1.6
(Q9T0F1) RecName: Full=F-box protein At4g09920; &AL049481_5(AL0... 34 3.6
CP000713_2198(CP000713|pid:none) Psychrobacter sp. PRwf-1, compl... 33 6.1

protein update 2009. 5.12
PSORT

psg: 0.89 gvh: 0.39 alm: 0.50 top: 0.43 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: endoplasmic reticulum
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for CFB894 is cyt

5' end seq. ID CFB894F
5' end seq.
>CFB894F.Seq
ATACAATTTAATTTATTAATTTTTTAACGGCAAAACTAAAAATAATTATTTATATTGTAA
TAATTTTTTTGTAGTAGTATCCAATTTTCTTTTGGATACGAAAAGGCGATTGCTTCATTT
TATCCACCTCCAGGTGATTTGCATCCCACTACTCATAATTTTTGGGCATGTAATAGTGTC
ATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAATAATGCCGGTATCTATGCAATT
TTCTCGACCGCCAATGAGATCATCGACGGTAATGAATACATGCTTCCACTATTTTATATT
GGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGATCACAGTAGACGAAACCATGTT
GATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCATTGGATGATTATGGTTACAGT
AACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAATTCAAAACTCAATTCAACTCA
TGGGATAACCTCGGTTTTGATCCACAGTATGATACTGCTTATCCAGATGAAAATGGTTTG
GGATGGGATATCCTTGCATCTTTTTATAATATGGATATCAATGCTCCATCTTTTAATATT
----------
Length of 5' end seq. 600
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -