>CFB874 (CFB874Q) /CSM/CF/CFB8-D/CFB874Q.Seq.d/
ACTGTTGGCCTACTGGGAGTTACTTCGTTTTTATATAACACGCACAATAATATTATTATT
TAAAATAATTGTAACTGTATTTTATTAAAAATATAATTATTTCAAATAGTATATATAAAA
AACAAAGATGGCAGATGATGCAATTAGAATAGCANTTGTAAATGCAGATAGATGCAAACC
AAAGAAATGTAGTCAAGANTGTAAAAAGTATTGCCCAGTCGTAAAGATGGGTAAACTTTG
TATTGXXXXXXXXXXTTATCAGAATGTTGGCTGGTCATATGCCATCCGATACTGATGCTC
AAGTTCCAGAGTTGAATGTCAGTTACAAACCACAAAAAATCGATCCAAAATTCCCAGGTT
CCGTTAGAGAATTGATTAATAAACGTATTTGCAACACTTTCCTTCATCCACAATTCCAAT
CCGATGTCGTTAAACCATTAAACATTGAAAACATCATCGACAATCAAGTACTCAATTTAT
CTGGTGGTGAGTTACAACGTGTTGCCATCGTTTTATGTTTAGGTCAACCTGCTGATATCT
ATCTCATTGATGAACCATCCGCTTATTTGGATTCTGAACAACGTATTATCGTCTCTAAAG
TCATCAAGAGATTCATTCTTCACGCTGGTAAATCTGGTTTCATCGTAGAGCACGATTTCA
TTATGGCCACTTATTTAGCTGATCGTGTCATCGTTTATGATGGTATTCCAGGTGTCTCTT
GTGNTGCTAATACTCCACAATCTCTCCTCACTGGTATGAACTCTTTCCTTAAATCTCTCG
AAATCACTTTCCGTCGTGATCCATCCAATTTCCGTCCAAGAATAACAAATTAAATTCAAT
CAAAGATAATNAACAAAAAGCTGCGGNATATTTCTTCCTNATAATGT

llaywellrfyitrtiillfkiivtvfy*kynyfk*yi*KTKMADDAIRIAXVNADRCKP
KKCSQXCKKYCPVVKMGKLCI---

---IRMLAGHMPSDTDAQVPELNVSYKPQKIDPKFPGSVRELINKRICNTFLHPQFQSDV
VKPLNIENIIDNQVLNLSGGELQRVAIVLCLGQPADIYLIDEPSAYLDSEQRIIVSKVIK
RFILHAGKSGFIVEHDFIMATYLADRVIVYDGIPGVSCXANTPQSLLTGMNSFLKSLEIT
FRRDPSNFRPRITN*iqskixnkklrxissx*c

Frame A:
tvgllgvtsflynthnniii*nncncillki*lfqivyiknkdgr*cn*nsxckcr*mqt
kem*srx*kvlpsrkdg*tly---

---lsecwlvichpilmlkfqs*msvtnhkksiqnsqvplen*linvfatlsfihnsnpm
slnh*tlktsstikysiylvvsynvlpsfyv*vnllisislmnhpliwilnnvlsslkss
rdsfftlvnlvss*stislwpli*livssfmmvfqvslvxlilhnlsslv*tlslnlsks
lsvvihpisvqe*qikfnqr*xtkscgiflpxn

Frame B:
llaywellrfyitrtiillfkiivtvfy*kynyfk*yi*KTKMADDAIRIAXVNADRCKP
KKCSQXCKKYCPVVKMGKLCI---

---yqnvgwsyairy*csssrvecqlqttknrskiprfr*rid**tylqhfpsstipirc
r*tikh*khhrqsstqfiww*vttcchrfmfrstc*ylsh**tirlfgf*ttyyrl*shq
eihssrw*iwfhrrarfhyghlfs*schrl*wysrcllxc*ystisphwyelfp*isrnh
fps*siqfpsknnklnsikdnxqkaaxyfflim

Frame C:
cwptgsyfvfi*haq*yyylk*l*lyfikniiisnsiykkqrwqmmqle*xl*mqidanq
rnvvkxvksiaqs*rwvnfvl---

---IRMLAGHMPSDTDAQVPELNVSYKPQKIDPKFPGSVRELINKRICNTFLHPQFQSDV
VKPLNIENIIDNQVLNLSGGELQRVAIVLCLGQPADIYLIDEPSAYLDSEQRIIVSKVIK
RFILHAGKSGFIVEHDFIMATYLADRVIVYDGIPGVSCXANTPQSLLTGMNSFLKSLEIT
FRRDPSNFRPRITN*iqskixnkklrxissx*c

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFB874 (CFB874Q) /CSM/CF/CFB8-D/CFB874Q.Seq.d/                       1663   0.0
VFK139 (VFK139Q) /CSM/VF/VFK1-B/VFK139Q.Seq.d/                       1215   0.0
CHO528 (CHO528Q) /CSM/CH/CHO5-B/CHO528Q.Seq.d/                       1215   0.0
CFB124 (CFB124Q) /CSM/CF/CFB1-A/CFB124Q.Seq.d/                       1215   0.0
CFA366 (CFA366Q) /CSM/CF/CFA3-C/CFA366Q.Seq.d/                       1215   0.0
VHN381 (VHN381Q) /CSM/VH/VHN3-D/VHN381Q.Seq.d/                       1213   0.0
CFG104 (CFG104Q) /CSM/CF/CFG1-A/CFG104Q.Seq.d/                       1203   0.0
AFD629 (AFD629Q) /CSM/AF/AFD6-B/AFD629Q.Seq.d/                       1201   0.0
VHN147 (VHN147Q) /CSM/VH/VHN1-B/VHN147Q.Seq.d/                       1197   0.0
VHL677 (VHL677Q) /CSM/VH/VHL6-D/VHL677Q.Seq.d/                       1183   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY077634|AY077634.1 Dictyostelium discoideum RNaseL inhibitor-like protein ABCE.1 gene, complete cds.  1120   0.0    2
AX488972|AX488972.1 Sequence 6272 from Patent WO02053728.          66   6e-30  5
AL400489|AL400489.1 T7 end of clone AS0AA022A06 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus.    66   1e-23  4
AY450958|AY450958.1 Cercopithecus aethiops RNase L inhibitor mRNA, complete cds.    56   7e-21  5
AW331886|AW331886.1 S1H10 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.   109   9e-21  2
CB550203|CB550203.1 MMPL0011_E09 MMPL Macaca mulatta cDNA, mRNA sequence.    56   3e-20  5
AU296501|AU296501.1 Sus scrofa mRNA, clone: olf_111_E10, 5' end, expressed in olfactory bulb.    64   2e-19  4
Z50111|Z50111.1 S.cerevisiae chromosome IV cosmid 6652.            46   2e-17  4
AX831598|AX831598.1 Sequence 2318 from Patent WO03072602.          46   2e-17  4
AX820568|AX820568.1 Sequence 2318 from Patent EP1338608.           46   2e-17  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY077634_1(AY077634|pid:none) Dictyostelium discoideum RNaseL in...   376   e-106
BT044624_1(BT044624|pid:none) Salmo salar clone ssal-rgf-001-081...   279   4e-75
AM467716_1(AM467716|pid:none) Vitis vinifera contig VV78X234292....   282   9e-75
AK226939_1(AK226939|pid:none) Arabidopsis thaliana mRNA for RNas...   281   3e-74
AK221885_1(AK221885|pid:none) Arabidopsis thaliana mRNA for RNas...   281   3e-74
CP000593_269(CP000593|pid:none) Ostreococcus lucimarinus CCE9901...   279   1e-73
AY450958_1(AY450958|pid:none) Cercopithecus aethiops RNase L inh...   273   2e-73
AB168951_1(AB168951|pid:none) Macaca fascicularis testis cDNA, c...   273   2e-73
(P61221) RecName: Full=ATP-binding cassette sub-family E member ...   273   2e-73
AK167704_1(AK167704|pid:none) Mus musculus 14 days embryo liver ...   273   2e-73

 psg: 0.57  gvh: 0.47  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CFB874 is cyt

>CFB874F.Seq
ACTGTTGGCCTACTGGGAGTTACTTCGTTTTTATATAACACGCACAATAATATTATTATT
TAAAATAATTGTAACTGTATTTTATTAAAAATATAATTATTTCAAATAGTATATATAAAA
AACAAAGATGGCAGATGATGCAATTAGAATAGCANTTGTAAATGCAGATAGATGCAAACC
AAAGAAATGTAGTCAAGANTGTAAAAAGTATTGCCCAGTCGTAAAGATGGGTAAACTTTG
TATTG----------

>CFB874Z.Seq
----------TTATCAGAATGTTGGCTGGTCATATGCCATCCGATACTGATGCTCAAGTT
CCAGAGTTGAATGTCAGTTACAAACCACAAAAAATCGATCCAAAATTCCCAGGTTCCGTT
AGAGAATTGATTAATAAACGTATTTGCAACACTTTCCTTCATCCACAATTCCAATCCGAT
GTCGTTAAACCATTAAACATTGAAAACATCATCGACAATCAAGTACTCAATTTATCTGGT
GGTGAGTTACAACGTGTTGCCATCGTTTTATGTTTAGGTCAACCTGCTGATATCTATCTC
ATTGATGAACCATCCGCTTATTTGGATTCTGAACAACGTATTATCGTCTCTAAAGTCATC
AAGAGATTCATTCTTCACGCTGGTAAATCTGGTTTCATCGTAGAGCACGATTTCATTATG
GCCACTTATTTAGCTGATCGTGTCATCGTTTATGATGGTATTCCAGGTGTCTCTTGTGNT
GCTAATACTCCACAATCTCTCCTCACTGGTATGAACTCTTTCCTTAAATCTCTCGAAATC
ACTTTCCGTCGTGATCCATCCAATTTCCGTCCAAGAATAACAAATTAAATTCAATCAAAG
ATAATNAACAAAAAGCTGCGGNATATTTCTTCCTNATAATGT

>CFB874P.Seq
ACTGTTGGCCTACTGGGAGTTACTTCGTTTTTATATAACACGCACAATAATATTATTATT
TAAAATAATTGTAACTGTATTTTATTAAAAATATAATTATTTCAAATAGTATATATAAAA
AACAAAGATGGCAGATGATGCAATTAGAATAGCANTTGTAAATGCAGATAGATGCAAACC
AAAGAAATGTAGTCAAGANTGTAAAAAGTATTGCCCAGTCGTAAAGATGGGTAAACTTTG
TATTG----------TTATCAGAATGTTGGCTGGTCATATGCCATCCGATACTGATGCTC
AAGTTCCAGAGTTGAATGTCAGTTACAAACCACAAAAAATCGATCCAAAATTCCCAGGTT
CCGTTAGAGAATTGATTAATAAACGTATTTGCAACACTTTCCTTCATCCACAATTCCAAT
CCGATGTCGTTAAACCATTAAACATTGAAAACATCATCGACAATCAAGTACTCAATTTAT
CTGGTGGTGAGTTACAACGTGTTGCCATCGTTTTATGTTTAGGTCAACCTGCTGATATCT
ATCTCATTGATGAACCATCCGCTTATTTGGATTCTGAACAACGTATTATCGTCTCTAAAG
TCATCAAGAGATTCATTCTTCACGCTGGTAAATCTGGTTTCATCGTAGAGCACGATTTCA
TTATGGCCACTTATTTAGCTGATCGTGTCATCGTTTATGATGGTATTCCAGGTGTCTCTT
GTGNTGCTAATACTCCACAATCTCTCCTCACTGGTATGAACTCTTTCCTTAAATCTCTCG
AAATCACTTTCCGTCGTGATCCATCCAATTTCCGTCCAAGAATAACAAATTAAATTCAAT
CAAAGATAATNAACAAAAAGCTGCGGNATATTTCTTCCTNATAATGT