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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFB766
Library CF
(Link to library)
Clone ID CFB766
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16243-1
Original site URL
Representative seq. ID CFB766P
(Link to Original site)
Representative DNA sequence 
>CFB766 (CFB766Q) /CSM/CF/CFB7-C/CFB766Q.Seq.d/
CACTGTTGGCCTACTGGATATTTATATATAATATTACACCCCATAACTAATAAAATGTCA
TTCAATTCAAGAATTGAAACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCA
AATCCAACTTCTGGATCAGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGT
ACAGCAATTTGTAAAGCTAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTA
GCACCAGTTATTAAACATATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGAT
GTTGTTATGGGAGCAGTATTACCAAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCC
ACATTATTAGCAGGTTTACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCA
TCAGGTTTACAAGCAATTGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATT
GGTTTAGCAGGCGGTGTANAATCAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTC
XXXXXXXXXXGTCGCAGAGCGTTTTGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGT
AAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAAATCGT
TCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTAT
CCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGG
TACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTAT
GAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGC
TGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGC
CTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTTT
TGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCC
AAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAAGGCT
ACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATAGGTGTATCTCTAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
HCWPTGYLYIILHPITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFR
TAICKAKRGAFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVA
TLLAGLPKEVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVXSMSLNPMAWDGGF
---

---VAERFGVTRKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEGI
REKTTVADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFVAFA
AVGVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNKVNP
NGSGIALGHPLGATGARQRLPFQENYIVVKVNRCIS
Translated Amino Acid sequence (All Frames) 
Frame A:
HCWPTGYLYIILHPITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFR
TAICKAKRGAFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVA
TLLAGLPKEVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVXSMSLNPMAWDGGF
---

---VAERFGVTRKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTVKTEDGKTIVVDKDEGI
REKTTVADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAERLGLKVELVFVAFA
AVGVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQAFYSCKVLGLDMNKVNP
NGSGIALGHPLGATGARQRLPFQENYIVVKVNRCIS

Frame B:
tvglldiyi*yytp*likchsiqelklflvt*aldqf*nqiqlldqlnqemil*llhhfv
qqfvklkeehskrqhqmiy*hqllnilsklpn*iqn*lemllweqyyqdhhkvqpklelp
hy*qvyqrkyhviqstdnvhqvykqlpivqqqskqvsmtlv*qavxnq*v*iqwhgmvv-
--

---sqsvlvspektkmnsl*ihtrrqvppkkqvnltmksfqsp*rprmakpsssiktkvs
vrkpplqiwpn*nqlskrvvqpplvtlvk*vmvpplv*l*kevppkdwvsrlnwfs*lll
lsvsnhplwvlvqplqfqpp*nklvsplkistflksmkllllkhftvvrfwvwi*tkliq
malvsl*vih*vllvpvkgyhfkritss*r*igvsl

Frame C:
llaywifiynitphn**nviqfkn*nyfsslkhwtnfriksnfwis*irr*ycncctisy
snl*s*krsiqrdstr*fistsy*tyyqsyqirskinwrccygssitkiitrcnrs*sch
iisrftkgstmlysqqtmfirftsncqlcsssqsrfl*hwfsrrcxinefksngmgwwf-
--

---rrafwchqkrpr*ilckftqegrcrpksr*i*r*nrsshrkdrgwqnhrrr*rrryp
*enhrcrfgqiktsfqrgwynhrw*l*sne*wcrrlfsyekkyrrkigsqg*igfrsfcc
crcrtihygywssrcnssrlktswshh*ryrrf*nq*sfcfssilql*gfgfgyeqs*sk
wlwyrfrssircywcpskatisrelhrrkgk*vyly
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFB766 (CFB766Q) /CSM/CF/CFB7-C/CFB766Q.Seq.d/                       2296   0.0
VFA143 (VFA143Q) /CSM/VF/VFA1-B/VFA143Q.Seq.d/                       1257   0.0
AFJ691 (AFJ691Q) /CSM/AF/AFJ6-D/AFJ691Q.Seq.d/                       1257   0.0
SFL240 (SFL240Q) /CSM/SF/SFL2-B/SFL240Q.Seq.d/                       1251   0.0
SFF320 (SFF320Q) /CSM/SF/SFF3-A/SFF320Q.Seq.d/                       1249   0.0
SFF124 (SFF124Q) /CSM/SF/SFF1-A/SFF124Q.Seq.d/                       1249   0.0
SFL277 (SFL277Q) /CSM/SF/SFL2-D/SFL277Q.Seq.d/                       1241   0.0
VFK412 (VFK412Q) /CSM/VF/VFK4-A/VFK412Q.Seq.d/                       1235   0.0
VFB239 (VFB239Q) /CSM/VF/VFB2-B/VFB239Q.Seq.d/                       1235   0.0
SFF247 (SFF247Q) /CSM/SF/SFF2-B/SFF247Q.Seq.d/                       1235   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.  1162   0.0    9
CA917334|CA917334.1 EST641481 GPOD Medicago truncatula cDNA clone GPOD-35H18, mRNA sequence.    40   1e-15  6
CA858588|CA858588.1 EST635843 GLSD Medicago truncatula cDNA clone pGLSD-38M16, mRNA sequence.    40   6e-12  5
CB005315|CB005315.1 VVC011E10_126660 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC011E10 5, mRNA sequence.    60   5e-11  4
AU089542|AU089542.1 Lotus japonicus flower bud cDNA clone: Ljfb-v09.    44   3e-10  4
CB008288|CB008288.1 VVC055H06_148036 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC055H06 5, mRNA sequence.    60   2e-09  3
BM065622|BM065622.1 KS07005E12 KS07 Capsicum annuum cDNA, mRNA sequence.    68   2e-08  2
CA515447|CA515447.1 KS09042A06 KS09 Capsicum annuum cDNA, mRNA sequence.    68   3e-08  2
BM066045|BM066045.1 KS07010C02 KS07 Capsicum annuum cDNA, mRNA sequence.    68   3e-08  2
CF609274|CF609274.1 INFIO01_000052 Grape Inflorescence pSPORT1 Library Vitis vinifera cDNA 5', mRNA sequence.    56   5e-08  3
dna update 2004. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso...   355   0.0
AM474896_9(AM474896|pid:none) Vitis vinifera contig VV79X001698....   223   e-101
X75329_1(X75329|pid:none) M.indica (Manila) THMF5 mRNA for 3-ket...   222   e-101
S57792(S57792)acetyl-CoA C-acyltransferase (EC 2.3.1.16) B precu...   220   e-101
AB333797_1(AB333797|pid:none) Glycine max mRNA for peroxisomal 3...   219   e-101
EU964831_1(EU964831|pid:none) Zea mays clone 281881 3-ketoacyl-C...   228   e-100
BT034496_1(BT034496|pid:none) Zea mays full-length cDNA clone ZM...   228   e-100
(Q56WD9) RecName: Full=3-ketoacyl-CoA thiolase 2, peroxisomal;  ...   224   1e-99
T07989(T07989) acetyl-CoA C-acyltransferase (EC 2.3.1.16) precur...   223   1e-99
BT070433_1(BT070433|pid:none) Picea sitchensis clone WS02729_F15...   220   1e-99
protein update 2009. 5.12
PSORT 

 psg: 0.89  gvh: 0.40  alm: 0.28  top: 0.33  tms: 0.07  mit: 0.31  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: nuclear
	 20.0 %: endoplasmic reticulum
	 16.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: peroxisomal
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CFB766 is nuc
5' end seq. ID CFB766F
5' end seq. 
>CFB766F.Seq
CACTGTTGGCCTACTGGATATTTATATATAATATTACACCCCATAACTAATAAAATGTCA
TTCAATTCAAGAATTGAAACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCA
AATCCAACTTCTGGATCAGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGT
ACAGCAATTTGTAAAGCTAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTA
GCACCAGTTATTAAACATATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGAT
GTTGTTATGGGAGCAGTATTACCAAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCC
ACATTATTAGCAGGTTTACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCA
TCAGGTTTACAAGCAATTGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATT
GGTTTAGCAGGCGGTGTANAATCAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTC
----------
Length of 5' end seq. 540
3' end seq. ID CFB766Z
3' end seq. 
>CFB766Z.Seq
----------GTCGCAGAGCGTTTTGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGT
AAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAAATCGT
TCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTAT
CCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGG
TACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTAT
GAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGC
TGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGC
CTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTTT
TGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCC
AAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAAGGCT
ACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATAGGTGTATCTCTAT
Length of 3' end seq. 641
Connected seq. ID CFB766P
Connected seq. 
>CFB766P.Seq
CACTGTTGGCCTACTGGATATTTATATATAATATTACACCCCATAACTAATAAAATGTCA
TTCAATTCAAGAATTGAAACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCA
AATCCAACTTCTGGATCAGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGT
ACAGCAATTTGTAAAGCTAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTA
GCACCAGTTATTAAACATATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGAT
GTTGTTATGGGAGCAGTATTACCAAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCC
ACATTATTAGCAGGTTTACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCA
TCAGGTTTACAAGCAATTGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATT
GGTTTAGCAGGCGGTGTANAATCAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTC
----------GTCGCAGAGCGTTTTGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGT
AAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAAATCGT
TCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTAT
CCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGG
TACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTAT
GAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGC
TGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGC
CTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTTT
TGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCC
AAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAAGGCT
ACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATAGGTGTATCTCTAT
Length of connected seq. 1181
Full length Seq ID -
Full length Seq. -
Length of full length seq. -