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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFB753
Library CF
(Link to library)
Clone ID CFB753
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11380-1
Original site URL
Representative seq. ID CFB753F
(Link to Original site)
Representative DNA sequence 
>CFB753 (CFB753Q) /CSM/CF/CFB7-C/CFB753Q.Seq.d/
AATCGAACAATTCATTAAATCAAAATNACCACAAGCTCAAATGGCTCGTACAAAATATGC
AATTACCTTTGTTAGTGGTTCTGGTTTTAGAAATGTTCAAATCGTTTTACGTATTTATAA
ATCACCAGCTGAGGTTTTAATGGGTTTCGATATTGATTGTTGTTCCATTGGTTTTGATGG
TACCGATGTTTATGCTATGCCACGTGCCATTAAAGCCGTAACCACCAGTTGTAATATTGT
CTCTATGAGTAGAAGATCATTAACCTATGAAACTCGTTTATTCAAATATGCACTCCGTGG
TTTCTCAATCAGAGTACCAAATCTTGATAAACGTAAGATTCCAATGGGTCAAATTTGTTC
CAGTGATGGTAAAGGTTCAACTGGTTTACXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
IEQFIKSKXPQAQMARTKYAITFVSGSGFRNVQIVLRIYKSPAEVLMGFDIDCCSIGFDG
TDVYAMPRAIKAVTTSCNIVSMSRRSLTYETRLFKYALRGFSIRVPNLDKRKIPMGQICS
SDGKGSTGL---
Translated Amino Acid sequence (All Frames) 
Frame A:
nrtih*ikxttssngsykicnylc*wfwf*kcsnrftyl*its*gfngfry*llfhwf*w
yrclcyatch*srnhql*yclye*kiinl*nsfiqictpwflnqstks**t*dsngsnlf
q*w*rfnwf---


Frame B:
IEQFIKSKXPQAQMARTKYAITFVSGSGFRNVQIVLRIYKSPAEVLMGFDIDCCSIGFDG
TDVYAMPRAIKAVTTSCNIVSMSRRSLTYETRLFKYALRGFSIRVPNLDKRKIPMGQICS
SDGKGSTGL---


Frame C:
snnslnqnxhklkwlvqnmqlpllvvlvlemfksfyvfinhqlrf*wvsilivvplvlmv
pmfmlchvplkp*ppvvilsl*vedh*pmklvysnmhsvvsqseyqilinvrfqwvkfvp
vmvkvqlv---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFB753 (CFB753Q) /CSM/CF/CFB7-C/CFB753Q.Seq.d/                        765   0.0
VHO252 (VHO252Q) /CSM/VH/VHO2-C/VHO252Q.Seq.d/                        716   0.0
VHK513 (VHK513Q) /CSM/VH/VHK5-A/VHK513Q.Seq.d/                        640   0.0
VHK243 (VHK243Q) /CSM/VH/VHK2-B/VHK243Q.Seq.d/                        428   e-119
SHF635 (SHF635Q) /CSM/SH/SHF6-B/SHF635Q.Seq.d/                        117   1e-25
VSC647 (VSC647Q) /CSM/VS/VSC6-B/VSC647Q.Seq.d/                         36   0.39
SHK255 (SHK255Q) /CSM/SH/SHK2-C/SHK255Q.Seq.d/                         36   0.39
SHJ872 (SHJ872Q) /CSM/SH/SHJ8-C/SHJ872Q.Seq.d/                         36   0.39
SHI177 (SHI177Q) /CSM/SH/SHI1-D/SHI177Q.Seq.d/                         36   0.39
SHG125 (SHG125Q) /CSM/SH/SHG1-B/SHG125Q.Seq.d/                         36   0.39
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX571860|BX571860.1 Photorhabdus luminescens subsp. laumondii TTO1 complete genome;  segment 2/17.    34   0.74   5
BG646668|BG646668.1 EST508287 HOGA Medicago truncatula cDNA clone pHOGA-9O20 5' end, mRNA sequence.    38   0.96   2
AC021950|AC021950.2 Homo sapiens clone RP11-366H10, LOW-PASS SEQUENCE SAMPLING.    32   1.3    4
BF645747|BF645747.1 NF040A01EC1F1003 Elicited cell culture Medicago truncatula cDNA clone NF040A01EC 5', mRNA sequence.    38   1.3    2
AW694950|AW694950.2 NF081H02ST1F1026 Developing stem Medicago truncatula cDNA clone NF081H02ST 5', mRNA sequence.    38   1.4    2
AW692968|AW692968.2 NF061D09ST1F1000 Developing stem Medicago truncatula cDNA clone NF061D09ST 5', mRNA sequence.    38   1.4    2
CB891107|CB891107.1 EST648076 KV3 Medicago truncatula cDNA clone KV3-49M17, mRNA sequence.    38   1.6    2
CB891106|CB891106.1 EST648075 KV3 Medicago truncatula cDNA clone KV3-49M15, mRNA sequence.    38   1.6    2
AF494278|AF494278.1 Chaetosphaeridium globosum chloroplast, complete genome.    36   4.5    3
BM085321|BM085321.1 saj35c04.y1 Gm-c1066 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1066-4712 5' similar to TR:O82506 O82506 F2P3.13 PROTEIN. ;, mRNA sequence.    34   4.7    2
dna update 2004. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU633901_197(CU633901|pid:none) Podospora anserina genomic DNA c...   100   1e-20
AM920427_808(AM920427|pid:none) Penicillium chrysogenum Wisconsi...   100   3e-20
AM420293_1923(AM420293|pid:none) Saccharopolyspora erythraea NRR...    33   3.9
AM408590_1463(AM408590|pid:none) Mycobacterium bovis BCG Pasteur...    33   3.9
protein update 2008.12.24
PSORT 

 psg: 0.61  gvh: 0.44  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.07
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: mitochondrial
	 28.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: vesicles of secretory system

>> prediction for CFB753 is mit
5' end seq. ID CFB753F
5' end seq. 
>CFB753F.Seq
AATCGAACAATTCATTAAATCAAAATNACCACAAGCTCAAATGGCTCGTACAAAATATGC
AATTACCTTTGTTAGTGGTTCTGGTTTTAGAAATGTTCAAATCGTTTTACGTATTTATAA
ATCACCAGCTGAGGTTTTAATGGGTTTCGATATTGATTGTTGTTCCATTGGTTTTGATGG
TACCGATGTTTATGCTATGCCACGTGCCATTAAAGCCGTAACCACCAGTTGTAATATTGT
CTCTATGAGTAGAAGATCATTAACCTATGAAACTCGTTTATTCAAATATGCACTCCGTGG
TTTCTCAATCAGAGTACCAAATCTTGATAAACGTAAGATTCCAATGGGTCAAATTTGTTC
CAGTGATGGTAAAGGTTCAACTGGTTTAC----------
Length of 5' end seq. 389
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -