CFB743
Library CF
(Link to library)
Clone ID CFB743
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID CFB743F
(Link to Original site)
Representative DNA sequence
>CFB743 (CFB743Q) /CSM/CF/CFB7-B/CFB743Q.Seq.d/
ACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAATATC
CATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAAT
GGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAA
CTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAA
AAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTC
AAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAA
TTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTG
GTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAA
TGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTG
CCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
kkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIAT
VRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKI
YIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPCA
VLGWNAAISMI---


Translated Amino Acid sequence (All Frames)
Frame A:
tknif**nr*ikk*lpltnihswln*alklkimmessmengevlvkssnv*iqqiikllq
llevlhqknmkhvfkqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*fh*kwvk
ftlklkvkyknsltyaimqlv*vdqsmvk*chlnvqitf*wkpgih*v*lvslllsishv
pylvgmlqsq*---


Frame B:
qktfsnktdklkndyl*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk**sycn
c*rcctrri*nmyssnvsskskmgintsskkr*nc*inwssherkn*tiikinfirng*n
lh*s*r*strih*rmrlcnwfk*inqwssdai*tskshfngnlesirfswyhycfqfpmc
rtwleccnlnd---


Frame C:
kkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIAT
VRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKI
YIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPCA
VLGWNAAISMI---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFO793 (VFO793Q) /CSM/VF/VFO7-D/VFO793Q.Seq.d/ 1142 0.0
VFN595 (VFN595Q) /CSM/VF/VFN5-D/VFN595Q.Seq.d/ 1142 0.0
VFL522 (VFL522Q) /CSM/VF/VFL5-A/VFL522Q.Seq.d/ 1142 0.0
VFK658 (VFK658Q) /CSM/VF/VFK6-C/VFK658Q.Seq.d/ 1142 0.0
VFJ233 (VFJ233Q) /CSM/VF/VFJ2-B/VFJ233Q.Seq.d/ 1142 0.0
VFI240 (VFI240Q) /CSM/VF/VFI2-B/VFI240Q.Seq.d/ 1142 0.0
VFG476 (VFG476Q) /CSM/VF/VFG4-D/VFG476Q.Seq.d/ 1142 0.0
VFF640 (VFF640Q) /CSM/VF/VFF6-B/VFF640Q.Seq.d/ 1142 0.0
VFF540 (VFF540Q) /CSM/VF/VFF5-B/VFF540Q.Seq.d/ 1142 0.0
VFE748 (VFE748Q) /CSM/VF/VFE7-B/VFE748Q.Seq.d/ 1142 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 763 0.0 5
BU042811|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence. 74 4e-12 2
D88434|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds. 72 1e-08 1
AY034889|AY034889.1 Tortula ruralis aldehyde dehydrogenase ALDH2 (RNP129b) mRNA, complete cds. 46 2e-06 2
BG444603|BG444603.1 GA__Ea0024O05f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0024O05f, mRNA sequence. 42 1e-04 2
AW616676|AW616676.1 EST323087 L. hirsutum trichome, Cornell University Lycopersicon hirsutum cDNA clone cLHT12I1 5', mRNA sequence. 54 3e-04 2
BG887757|BG887757.1 EST513608 cSTD Solanum tuberosum cDNA clone cSTD7K13 5' sequence, mRNA sequence. 54 4e-04 2
BI920919|BI920919.1 EST540854 potato microtubers, in vitro-grown Solanum tuberosum cDNA clone cSTE26J22 5' end, mRNA sequence. 54 4e-04 2
BG887113|BG887113.1 EST512964 cSTD Solanum tuberosum cDNA clone cSTD3M14 5' sequence, mRNA sequence. 54 4e-04 2
CK269860|CK269860.1 EST715938 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POACP47 5' end, mRNA sequence. 54 4e-04 2
dna update 2004. 3. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ... 365 e-100
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase... 225 8e-58
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ... 223 4e-57
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326... 219 4e-56
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas... 216 3e-55
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ... 215 6e-55
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti... 214 2e-54
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM... 213 4e-54
AK160117_1(AK160117|pid:none) Mus musculus osteoclast-like cell ... 212 5e-54
(Q9DBF1) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen... 212 5e-54
protein update 2009. 5.12
PSORT

psg: 0.78 gvh: 0.31 alm: 0.29 top: 0.57 tms: 0.07 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
16.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: endoplasmic reticulum
8.0 %: Golgi
8.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for CFB743 is cyt

5' end seq. ID CFB743F
5' end seq.
>CFB743F.Seq
ACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAATATC
CATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAAT
GGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAA
CTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAA
AAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTC
AAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAA
TTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTG
GTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAA
TGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTG
CCGTACTTGGTTGGAATGCTGCAATCTCAATGATTT----------
Length of 5' end seq. 576
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -