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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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CFB710
Library CF
(Link to library)
Clone ID CFB710
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID CFB710P
(Link to Original site)
Representative DNA sequence 
>CFB710 (CFB710Q) /CSM/CF/CFB7-A/CFB710Q.Seq.d/
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAAACCAAAAA
AAAAAXXXXXXXXXXTCCANATTTCCATANATGTGTTNAAANACGTGGNGGNATNTTAAG
NTGNGAATTTGANCCNCCAANACAACCNANATCCCTTGATTGGGCTGAAAATGAAAATGA
TGATCGTGACTATNATGATCGTGACTATNATGATGATGAANATGATGGTGATTATNATGG
CCGNGACGGTGACTATGATGGTGATTATGATGGTGATTA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
l*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKKTKKK---

---PXFHXCVXXRGGXLXXEFXPPXQPXSLDWAENENDDRDYXDRDYXDDEXDGDYXGRD
GDYDGDYDGD
Translated Amino Acid sequence (All Frames) 
Frame A:
ivvfcsysn*isiqlkkvkikfvksicnkn**fkkkknqkk---

---sxfpxmcxxtwxxxkxxi*xxxttxip*lg*k*k**s*lx*s*lx***x*w*lxwpx
r*l*w*l*w*l

Frame B:
l*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKKTKKK---

---PXFHXCVXXRGGXLXXEFXPPXQPXSLDWAENENDDRDYXDRDYXDDEXDGDYXGRD
GDYDGDYDGD

Frame C:
csilfifklnintikks*n*ickinl*qklvi*kkkkpkkk---

---xisixvxkxvxxx*xxnlxxqxnxxpliglkmkmmivtxmivtxmmmxmmvixmaxt
vtmmvimmvi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLF502 (SLF502Q) /CSM/SL/SLF5-A/SLF502Q.Seq.d/                        155   5e-37
SLF326 (SLF326Q) /CSM/SL/SLF3-B/SLF326Q.Seq.d/                        155   5e-37
SHF559 (SHF559Q) /CSM/SH/SHF5-C/SHF559Q.Seq.d/                        155   5e-37
SHA894 (SHA894Q) /CSM/SH/SHA8-D/SHA894Q.Seq.d/                        155   5e-37
SHA483 (SHA483Q) /CSM/SH/SHA4-D/SHA483Q.Seq.d/                        155   5e-37
SFK778 (SFK778Q) /CSM/SF/SFK7-D/SFK778Q.Seq.d/                        155   5e-37
SFK753 (SFK753Q) /CSM/SF/SFK7-C/SFK753Q.Seq.d/                        155   5e-37
SFK673 (SFK673Q) /CSM/SF/SFK6-D/SFK673Q.Seq.d/                        155   5e-37
SFK593 (SFK593Q) /CSM/SF/SFK5-D/SFK593Q.Seq.d/                        155   5e-37
SFK451 (SFK451Q) /CSM/SF/SFK4-C/SFK451Q.Seq.d/                        155   5e-37
own update 2002.11.16
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    98   3e-73  4
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    98   4e-54  3
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    80   1e-27  2
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.    88   9e-14  1
AF078801|AF078801.1 Hordeum vulgare degenerate retrotransposon cereba polyprotein pseudogene, partial sequence.    52   0.005  1
AC116612|AC116612.5 Homo sapiens BAC clone RP13-582L3 from 4, complete sequence.    44   0.15   2
AC120971|AC120971.4 Rattus norvegicus clone CH230-323K24, WORKING DRAFT SEQUENCE, 2 unordered pieces.    40   0.15   3
AC094954|AC094954.6 Rattus norvegicus clone CH230-6H19, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38   0.20   3
BV025443|BV025443.1 S212P6456FC5.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site.    42   0.28   2
AE003694|AE003694.3 Drosophila melanogaster chromosome 3R, section 32 of 118 of the complete sequence.    42   0.29   5
dna update 2004. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...    56   4e-07
protein update 2008.12.24
PSORT 

 psg: 0.22  gvh: 0.49  alm: 0.60  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.06
 nuc: 0.07  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for CFB710 is nuc
5' end seq. ID CFB710F
5' end seq. 
>CFB710F.Seq
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAAACCAAAAA
AAAAA----------
Length of 5' end seq. 125
3' end seq. ID CFB710Z
3' end seq. 
>CFB710Z.Seq
----------TCCANATTTCCATANATGTGTTNAAANACGTGGNGGNATNTTAAGNTGNG
AATTTGANCCNCCAANACAACCNANATCCCTTGATTGGGCTGAAAATGAAAATGATGATC
GTGACTATNATGATCGTGACTATNATGATGATGAANATGATGGTGATTATNATGGCCGNG
ACGGTGACTATGATGGTGATTATGATGGTGATTA
Length of 3' end seq. 204
Connected seq. ID CFB710P
Connected seq. 
>CFB710P.Seq
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAAACCAAAAA
AAAAA----------TCCANATTTCCATANATGTGTTNAAANACGTGGNGGNATNTTAAG
NTGNGAATTTGANCCNCCAANACAACCNANATCCCTTGATTGGGCTGAAAATGAAAATGA
TGATCGTGACTATNATGATCGTGACTATNATGATGATGAANATGATGGTGATTATNATGG
CCGNGACGGTGACTATGATGGTGATTATGATGGTGATTA
Length of connected seq. 329
Full length Seq ID -
Full length Seq. -
Length of full length seq. -