NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFB701
Library CF
(Link to library)
Clone ID CFB701
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFB701Z
(Link to Original site)
Representative DNA sequence 
>CFB701 (CFB701Q) /CSM/CF/CFB7-A/CFB701Q.Seq.d/
XXXXXXXXXXGCTCAACAAGGTTATCAAGCATGGAAANAAGGTGTCAATNANATTGGTNA
TGANATCGCCAATACTGCNCATNACGTAGGTGATGGTTTNGCCAATACTGCACGTNAAGT
AGGTNATGGAATTANAATCCCTGCANAGGAGGGATATNAACTCNTTAAANATGGAGCTNA
ANAAACTTGGGTNAANAAATATTAAAGGTTATCCTTAATTTAAATTAAAAAAGCCCNACA
AAGAATGGCTGAACAANAANAAANAANAAGGTTTATGCAANAANAAAGTNAAANAAGACG
ATTGCAAANAAACANANAAAGACNAGAGCC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---QQGYQAWKXGVNXIGXXIANTAHXVGDGXANTARXVGXGIXIPAXEGYXLXKXGAXX
TWVXKY*rlsli*ikkaxqrmaeqxxxxrfmqxxsxxrrlqxnxxrxe
Translated Amino Acid sequence (All Frames) 
Frame A:
---lnkvikhgxkvsxxlvmxspilxxt*vmvxpilhvk*vmelxslxrrdxnslxmelx
klgxxnikgyp*fklkkpxkewlnxxkxxglcxxkvkxddckxtxkdxs


Frame B:
---strlssmexrcqxxwx*xrqycxxrr*wfxqyctxsrxwnxnpcxggixtx*xwsxx
nlgxxilkvilnln*ksptkng*txxxxkvyaxxkxxktiaxkxxktra


Frame C:
---QQGYQAWKXGVNXIGXXIANTAHXVGDGXANTARXVGXGIXIPAXEGYXLXKXGAXX
TWVXKY*rlsli*ikkaxqrmaeqxxxxrfmqxxsxxrrlqxnxxrxe
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFB701 (CFB701Q) /CSM/CF/CFB7-A/CFB701Q.Seq.d/                        313   9e-85
AFM181 (AFM181Q) /CSM/AF/AFM1-D/AFM181Q.Seq.d/                        299   1e-80
AFE266 (AFE266Q) /CSM/AF/AFE2-C/AFE266Q.Seq.d/                        293   8e-79
SFH473 (SFH473Q) /CSM/SF/SFH4-D/SFH473Q.Seq.d/                        291   3e-78
SFB426 (SFB426Q) /CSM/SF/SFB4-B/SFB426Q.Seq.d/                        291   3e-78
AFN608 (AFN608Q) /CSM/AF/AFN6-A/AFN608Q.Seq.d/                        287   5e-77
SFG821 (SFG821Q) /CSM/SF/SFG8-A/SFG821Q.Seq.d/                        285   2e-76
CHE306 (CHE306Q) /CSM/CH/CHE3-A/CHE306Q.Seq.d/                        285   2e-76
SSF267 (SSF267Q) /CSM/SS/SSF2-C/SSF267Q.Seq.d/                        281   3e-75
SLI611 (SLI611Q) /CSM/SL/SLI6-A/SLI611Q.Seq.d/                        281   3e-75
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BH538195|BH538195.1 BOGOL61TF BOGO Brassica oleracea genomic clone BOGOL61, genomicsurvey sequence.    44   1.2    1
dna update 2004. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116551_24(AC116551|pid:none) Dictyostelium discoideum chromoso...    33   2.2
AC117081_63(AC117081|pid:none) Dictyostelium discoideum chromoso...    33   2.9
protein update 2008.12.24
PSORT 

 psg: 0.81  gvh: 0.37  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for CFB701 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFB701Z
3' end seq. 
>CFB701Z.Seq
----------GCTCAACAAGGTTATCAAGCATGGAAANAAGGTGTCAATNANATTGGTNA
TGANATCGCCAATACTGCNCATNACGTAGGTGATGGTTTNGCCAATACTGCACGTNAAGT
AGGTNATGGAATTANAATCCCTGCANAGGAGGGATATNAACTCNTTAAANATGGAGCTNA
ANAAACTTGGGTNAANAAATATTAAAGGTTATCCTTAATTTAAATTAAAAAAGCCCNACA
AAGAATGGCTGAACAANAANAAANAANAAGGTTTATGCAANAANAAAGTNAAANAAGACG
ATTGCAAANAAACANANAAAGACNAGAGCC
Length of 3' end seq. 320
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -