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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFB693
Library CF
(Link to library)
Clone ID CFB693
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID CFB693P
(Link to Original site)
Representative DNA sequence 
>CFB693 (CFB693Q) /CSM/CF/CFB6-D/CFB693Q.Seq.d/
AAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAAATTTGTAAAATCAATTTGTAA
CAAAAACTAGTAATTTAAAAAAAAAAAAACCNAAAAAAAAAXXXXXXXXXXAATGTCCAN
ATTTCCATANATGTGTTNAAAAACGTGGNGGNATCTTAAGNTGNGAATTTNANCCCCCAA
NACAACCNANATCCCTTGATTGGGCTGAAAATNAAAATGATGATCGNGACTATNATGATC
GNGNCTATGATGATGATGAANATGATGGTGATTATNATGGCCG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ikyqyn*kklklnl*NQFVTKTSNLKKKKPKKK---

---CPXFHXCVXKRGGILXXEFXPPXQPXSLDWAENXNDDRDYXDRXYDDDEXDGDYXG
Translated Amino Acid sequence (All Frames) 
Frame A:
klnintikks*n*ickinl*qklvi*kkknxkk---

---nvxisixvxknvxxs*xxnxxpqxnxxpliglkxkmmixtxmixxmmmmxmmvixma

Frame B:
n*isiqlkkvkikfvksicnkn**fkkkktxkk---

---msxfpxmcxktwxxlkxxixxpxttxip*lg*kxk**sxlx*sxl****x*w*lxwp

Frame C:
ikyqyn*kklklnl*NQFVTKTSNLKKKKPKKK---

---CPXFHXCVXKRGGILXXEFXPPXQPXSLDWAENXNDDRDYXDRXYDDDEXDGDYXG
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFB693 (CFB693Q) /CSM/CF/CFB6-D/CFB693Q.Seq.d/                        228   4e-59
SFK753 (SFK753Q) /CSM/SF/SFK7-C/SFK753Q.Seq.d/                        222   2e-57
SFH255 (SFH255Q) /CSM/SF/SFH2-C/SFH255Q.Seq.d/                        216   1e-55
SFF846 (SFF846Q) /CSM/SF/SFF8-B/SFF846Q.Seq.d/                        216   1e-55
CHA309 (CHA309Q) /CSM/CH/CHA3-A/CHA309Q.Seq.d/                        216   1e-55
CFG659 (CFG659Q) /CSM/CF/CFG6-C/CFG659Q.Seq.d/                        216   1e-55
AFH182 (AFH182Q) /CSM/AF/AFH1-D/AFH182Q.Seq.d/                        216   1e-55
AFD481 (AFD481Q) /CSM/AF/AFD4-D/AFD481Q.Seq.d/                        216   1e-55
SFD330 (SFD330Q) /CSM/SF/SFD3-B/SFD330Q.Seq.d/                        214   5e-55
CHB150 (CHB150Q) /CSM/CH/CHB1-C/CHB150Q.Seq.d/                        214   5e-55
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.   212   6e-73  3
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.   212   1e-67  2
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    80   7e-15  2
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    54   0.001  1
AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete sequence.    54   0.001  1
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    54   0.001  1
AF362371|AF362371.1 Dictyostelium discoideum histidine kinase DhkI (dhkI) gene, complete cds.    38   0.002  3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    36   0.006  7
AC135274|AC135274.2 Rattus norvegicus clone CH230-375K5, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    40   0.041  2
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   0.048  11
dna update 2004. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...    56   4e-07
protein update 2008.12.24
PSORT 

 psg: 0.23  gvh: 0.52  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.06
 nuc: 0.22  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for CFB693 is nuc
5' end seq. ID CFB693F
5' end seq. 
>CFB693F.Seq
AAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAAATTTGTAAAATCAATTTGTAA
CAAAAACTAGTAATTTAAAAAAAAAAAAACCNAAAAAAAAA----------
Length of 5' end seq. 101
3' end seq. ID CFB693Z
3' end seq. 
>CFB693Z.Seq
----------AATGTCCANATTTCCATANATGTGTTNAAAAACGTGGNGGNATCTTAAGN
TGNGAATTTNANCCCCCAANACAACCNANATCCCTTGATTGGGCTGAAAATNAAAATGAT
GATCGNGACTATNATGATCGNGNCTATGATGATGATGAANATGATGGTGATTATNATGGC
CG
Length of 3' end seq. 172
Connected seq. ID CFB693P
Connected seq. 
>CFB693P.Seq
AAATTAAATATCAATACAATTAAAAAAAGTTAAAATTAAATTTGTAAAATCAATTTGTAA
CAAAAACTAGTAATTTAAAAAAAAAAAAACCNAAAAAAAAA----------AATGTCCAN
ATTTCCATANATGTGTTNAAAAACGTGGNGGNATCTTAAGNTGNGAATTTNANCCCCCAA
NACAACCNANATCCCTTGATTGGGCTGAAAATNAAAATGATGATCGNGACTATNATGATC
GNGNCTATGATGATGATGAANATGATGGTGATTATNATGGCCG
Length of connected seq. 273
Full length Seq ID -
Full length Seq. -
Length of full length seq. -