>CFB692 (CFB692Q) /CSM/CF/CFB6-D/CFB692Q.Seq.d/
XXXXXXXXXXGATTATAGAAGAAGTAGTGATAATGNAGGTAAATCAGCAGCACCAATTGA
TCAATTAAATAATTTAAGTTTTAATGGTGATGAATATAATAGCGATGATGATGAGGAAGG
TGAATTTAGTGAATATAGTGAAGAGGATACAGTGAATCAATTCATTGTAGACGATGATCA
TATGGTACAAGTTATTGAAGGAACCCTTAGTTTAAATAATGAAAAGGGTAAGAAAAAAAT
TCAATCCAAAACATTGTTACGTCAAATCCTTGGAAATTTAAAGGATGGTGATTCACCAAA
AGAAACTATCATCATCTATGGTTTACCATTCCATTTCAGTGGTTGGAGAAAGTATATCCA
ATTGGAAGGTTTACGTAAACTCGTTGGTAATGCTATGATGGCTCAATGGCAAAATCCATT
AATTCAAAAACAATTTGGTATTGAAATTCCTGAAGGTAATCGTTTAAGAGAAGCCAAATA
CCAATTAAAAAGATCAATCTCTCAAAAGAAAAAAGCAGACTAGATAGATCAGTTCGTTCA
GAAAGT

---YRRSSDNXGKSAAPIDQLNNLSFNGDEYNSDDDEEGEFSEYSEEDTVNQFIVDDDHM
VQVIEGTLSLNNEKGKKKIQSKTLLRQILGNLKDGDSPKETIIIYGLPFHFSGWRKYIQL
EGLRKLVGNAMMAQWQNPLIQKQFGIEIPEGNRLREAKYQLKRSISQKKKAD*idqfvqk

Frame A:
---iieevvimxvnqqhqlin*ii*vlmvmniiammmrkvnlvnivkriq*insl*tmii
wykllkeplv*imkrvrkkfnpkhcyvkslei*rmvihqkklsssmvyhsisvvgesisn
wkvyvnslvml*wlngkih*fknnlvlkflkviv*ekpntn*kdqslkrkkqtr*issfr
k


Frame B:
---l*kk***xr*isstn*sik*fkf*w**i**r***gr*i**i**rgysesihcrr*sy
gtsy*rnp*fk**kg*eknsiqnivtsnpwkfkgw*ftkrnyhhlwftipfqwlekvypi
grft*trw*cydgsmaksinsktiwy*ns*r*sfkrsqipikkinlskeksrldrsvrse
s


Frame C:
---YRRSSDNXGKSAAPIDQLNNLSFNGDEYNSDDDEEGEFSEYSEEDTVNQFIVDDDHM
VQVIEGTLSLNNEKGKKKIQSKTLLRQILGNLKDGDSPKETIIIYGLPFHFSGWRKYIQL
EGLRKLVGNAMMAQWQNPLIQKQFGIEIPEGNRLREAKYQLKRSISQKKKAD*idqfvqk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFB692 (CFB692Q) /CSM/CF/CFB6-D/CFB692Q.Seq.d/                       1015   0.0
CFJ395 (CFJ395Q) /CSM/CF/CFJ3-D/CFJ395Q.Seq.d/                       1009   0.0
VFD239 (VFD239Q) /CSM/VF/VFD2-B/VFD239Q.Seq.d/                       1001   0.0
SFJ114 (SFJ114Q) /CSM/SF/SFJ1-A/SFJ114Q.Seq.d/                       1001   0.0
SFD704 (SFD704Q) /CSM/SF/SFD7-A/SFD704Q.Seq.d/                       1001   0.0
SFD556 (SFD556Q) /CSM/SF/SFD5-C/SFD556Q.Seq.d/                       1001   0.0
CFK411 (CFK411Q) /CSM/CF/CFK4-A/CFK411Q.Seq.d/                       1001   0.0
AHD545 (AHD545Q) /CSM/AH/AHD5-B/AHD545Q.Seq.d/                       1001   0.0
AFN446 (AFN446Q) /CSM/AF/AFN4-B/AFN446Q.Seq.d/                       1001   0.0
AFH838 (AFH838Q) /CSM/AF/AFH8-B/AFH838Q.Seq.d/                       1001   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC015687|AC015687.11 Homo sapiens chromosome , clone RP11-18M5, complete sequence.    42   0.002  6
AC099849|AC099849.4 Homo sapiens chromosome 18 clone RP11-863N1 map 18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    46   0.005  5
AC099053|AC099053.2 Homo sapiens chromosome 3 clone RP11-464H2, complete sequence.    36   0.011  7
AC024895|AC024895.9 Homo sapiens chromosome 3 clone RP11-368C9, WORKING DRAFT SEQUENCE, 19 unordered pieces.    36   0.011  7
AC140660|AC140660.2 Pan troglodytes clone CH251-145M14, WORKING DRAFT SEQUENCE, 7 ordered pieces.    38   0.014  5
AC011124|AC011124.9 Homo sapiens chromosome 8, clone RP11-45K10, complete sequence.    40   0.016  4
AP002430|AP002430.1 Homo sapiens genomic DNA, chromosome 11q clone:CTD-2318M15, WORKING DRAFT SEQUENCE, 20 unordered pieces.    36   0.017  9
AC090564|AC090564.7 Homo sapiens chromosome 8, clone RP11-368C9, complete sequence.    36   0.020  7
AC009802|AC009802.13 Homo sapiens chromosome 18 clone RP11-793J2 map 18, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    36   0.023  6
AC144638|AC144638.2 Pongo pygmaeus clone CH253-481N20, WORKING DRAFT SEQUENCE, 1 ordered piece.    36   0.027  6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT039425_1(BT039425|pid:none) Zea mays full-length cDNA clone ZM...    46   7e-04
BT039414_1(BT039414|pid:none) Zea mays full-length cDNA clone ZM...    45   0.001
AK099482_1(AK099482|pid:none) Oryza sativa Japonica Group cDNA c...    42   0.013
BT065557_1(BT065557|pid:none) Zea mays full-length cDNA clone ZM...    40   0.038
BT037216_1(BT037216|pid:none) Zea mays full-length cDNA clone ZM...    40   0.038
AP004996_15(AP004996|pid:none) Oryza sativa Japonica Group genom...    36   0.55
CP000553_1667(CP000553|pid:none) Prochlorococcus marinus str. NA...    36   0.71
AC135597_29(AC135597|pid:none) Oryza sativa chromosome 3 BAC OSJ...    35   1.6

 psg: 0.72  gvh: 0.17  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 1.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for CFB692 is nuc

>CFB692Z.Seq
----------GATTATAGAAGAAGTAGTGATAATGNAGGTAAATCAGCAGCACCAATTGA
TCAATTAAATAATTTAAGTTTTAATGGTGATGAATATAATAGCGATGATGATGAGGAAGG
TGAATTTAGTGAATATAGTGAAGAGGATACAGTGAATCAATTCATTGTAGACGATGATCA
TATGGTACAAGTTATTGAAGGAACCCTTAGTTTAAATAATGAAAAGGGTAAGAAAAAAAT
TCAATCCAAAACATTGTTACGTCAAATCCTTGGAAATTTAAAGGATGGTGATTCACCAAA
AGAAACTATCATCATCTATGGTTTACCATTCCATTTCAGTGGTTGGAGAAAGTATATCCA
ATTGGAAGGTTTACGTAAACTCGTTGGTAATGCTATGATGGCTCAATGGCAAAATCCATT
AATTCAAAAACAATTTGGTATTGAAATTCCTGAAGGTAATCGTTTAAGAGAAGCCAAATA
CCAATTAAAAAGATCAATCTCTCAAAAGAAAAAAGCAGACTAGATAGATCAGTTCGTTCA
GAAAGT