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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFB689
Library CF
(Link to library)
Clone ID CFB689
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14176-1
Original site URL
Representative seq. ID CFB689E
(Link to Original site)
Representative DNA sequence 
>CFB689 (CFB689Q) /CSM/CF/CFB6-D/CFB689Q.Seq.d/
AAAAAAACTNAAACAACACACACTTACACAATATATTTACTATTTTAAATTATATCTAAA
TCCGACAACAACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATATA
AAATAATGAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTA
AAACAGTTTCAGATTTTTTCTCATTTTGTGGAAGAATTGTTGATTTATTTTTAAGAAATG
ACCCAACTGGTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAA
CAGCTTTATTATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTA
CACCAGAATTAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATC
TCAGTGGTGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTG
TAAATAGAGAACATAGTGTGCCAGATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCAA
TTATTGCAGCAGGTTATAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGATG
AAGAACATATGATTTCATTAAAACTTAAAGTTGGAGCTGAAGCTGTCAAAGCAAAAGCAA
ATGAAATTGATAATAACCTTCACATTTCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTTG
TAGAGAGAGCAAATGCACTCGATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAA
GTGATATGATCTCTCAACAAGCTTCCAATTTAATGAAAGCAGCCGAAGAAAATAGTACAG
TTTCACCAATCGTAAATAAAGTTTCAAGTTTTGGTACTTTTATTANNCAAGAAGTTCAAC
AAATTC
sequence update 2001. 6. 9
Translated Amino Acid sequence 
knxnnthlhniftilnyi*irqqq*q*qqqpil*YTYKYKIMNPDFTVYVSNISLKANTK
TVSDFFSFCGRIVDLFLRNDPTGSSQQAIVVFESDSAAKTALLLTNALIVDKVIQVVQFT
PELEFDLTQQFSQQQQFNNLSGEQQPQQQQYVSQPQEDIVNREHSVPDNERSKTSVVASI
IAAGYSVGQDAAIKARQVDEEHMISLKLKVGAEAVKAKANEIDNNLHISESAAAIKGAVV
ERANALDERFQISGFFKSASDMISQQASNLMKAAEENSTVSPIVNKVSSFGTFIXQEVQQ
I
Translated Amino Acid sequence (All Frames) 
Frame A:
kktxtthtytiyllf*iisksdnnnnnnnnnpffnihinik**iqisqfmfqifh*kqil
kqfqifshfveelliyf*emtqlvvhnkq**ylnqiqlqkqlyy*qmh*l*ik*fklfnl
hqn*sli*hnnflnnnnliisvvnnnhnnnnmlvnhkktl*ienivcqimkevkplllhq
llqqvivldktlplkhvklmkni*fh*nlklelklskqkqmkliitftflrvplplrvql
*reqmhsmkdsksqvslrvqvi*slnklpi**kqpkkivqfhqs*ikfqvlvlllxkkfn
kf


Frame B:
kklkqhtltqyiyyfklylnptttititttthsliyi*i*nnesrfhslcfkyfiesky*
nsfrfflilwknc*fifkk*pnw*fttsnssi*irfscknsfiinkcincr*snsscsiy
trirv*fnttifsttti**sqw*tttttttic*sttrrhck*rt*car**kk*nlcccin
ycsrl*cwtrrch*stss**rtydfikt*sws*scqsksk*n***pshf*ecrch*gcsc
reskctr*kipnlrfl*eck*ydlstsfqfnessrrk*ysftnrk*sfkfwyfyxxrsst
n


Frame C:
knxnnthlhniftilnyi*irqqq*q*qqqpil*YTYKYKIMNPDFTVYVSNISLKANTK
TVSDFFSFCGRIVDLFLRNDPTGSSQQAIVVFESDSAAKTALLLTNALIVDKVIQVVQFT
PELEFDLTQQFSQQQQFNNLSGEQQPQQQQYVSQPQEDIVNREHSVPDNERSKTSVVASI
IAAGYSVGQDAAIKARQVDEEHMISLKLKVGAEAVKAKANEIDNNLHISESAAAIKGAVV
ERANALDERFQISGFFKSASDMISQQASNLMKAAEENSTVSPIVNKVSSFGTFIXQEVQQ
I
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSB202 (VSB202Q) /CSM/VS/VSB2-A/VSB202Q.Seq.d/                        888   0.0
VFO778 (VFO778Q) /CSM/VF/VFO7-D/VFO778Q.Seq.d/                        888   0.0
VFM217 (VFM217Q) /CSM/VF/VFM2-A/VFM217Q.Seq.d/                        888   0.0
VFJ841 (VFJ841Q) /CSM/VF/VFJ8-B/VFJ841Q.Seq.d/                        888   0.0
VFJ755 (VFJ755Q) /CSM/VF/VFJ7-C/VFJ755Q.Seq.d/                        888   0.0
VFG496 (VFG496Q) /CSM/VF/VFG4-D/VFG496Q.Seq.d/                        888   0.0
VFG273 (VFG273Q) /CSM/VF/VFG2-D/VFG273Q.Seq.d/                        888   0.0
VFC715 (VFC715Q) /CSM/VF/VFC7-A/VFC715Q.Seq.d/                        888   0.0
VFB756 (VFB756Q) /CSM/VF/VFB7-C/VFB756Q.Seq.d/                        888   0.0
CHB569 (CHB569Q) /CSM/CH/CHB5-C/CHB569Q.Seq.d/                        888   0.0
own update 2003.10.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           40   1e-08  17
AE014845|AE014845.1 Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence.    34   2e-04  15
AE014836|AE014836.1 Plasmodium falciparum 3D7 chromosome 11 section 1 of 8 of the complete sequence.    32   2e-04  16
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence.    40   4e-04  13
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    36   6e-04  15
AE014838|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence.    38   8e-04  14
AC053544|AC053544.5 Homo sapiens chromosome 4 clone RP11-793B9, complete sequence.    42   0.001  9
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence.    34   0.001  13
AE014829|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence.    46   0.002  11
AE014850|AE014850.1 Plasmodium falciparum 3D7 chromosome 12, section 7 of 9 of the complete sequence.    38   0.002  10
dna update 2004. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC090882_24(AC090882|pid:none) Oryza sativa chromosome 3 BAC OSJ...    66   2e-09
AY087960_1(AY087960|pid:none) Arabidopsis thaliana clone 39922 m...    65   3e-09
CR855144_15(CR855144|pid:none) Oryza sativa (indica cultivar-gro...    65   4e-09
BT062058_1(BT062058|pid:none) Zea mays full-length cDNA clone ZM...    64   7e-09
EU962087_1(EU962087|pid:none) Zea mays clone 240116 RNA recognit...    64   7e-09
BT068289_1(BT068289|pid:none) Zea mays full-length cDNA clone ZM...    64   9e-09
BT010766_1(BT010766|pid:none) Arabidopsis thaliana At5g46870 gen...    64   9e-09
BT061154_1(BT061154|pid:none) Zea mays full-length cDNA clone ZM...    64   9e-09
AC091811_13(AC091811|pid:none) Oryza sativa chromosome 3 BAC OSJ...    63   1e-08
AK061483_1(AK061483|pid:none) Oryza sativa Japonica Group cDNA c...    63   2e-08
protein update 2009. 6.30
PSORT 

 psg: 0.84  gvh: 0.45  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CFB689 is cyt
5' end seq. ID CFB689F
5' end seq. 
>CFB689F.Seq
AAAAAAACTNAAACAACACACACTTACACAATATATTTACTATTTTAAATTATATCTAAA
TCCGACAACAACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATATA
AAATAATGAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTA
AAACAGTTTCAGATTTTTTCTCATTTTGTGGAAGAATTGTTGATTTATTTTTAAGAAATG
ACCCAACTGGTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAA
CAGCTTTATTATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTA
CACCAGAATTAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATC
TCAGTGGTGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTG
TAAATAGAGAACATAGTGTGCCAGATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCAA
TTATTGCAGCAGGTTATAGTGTTGGAC----------
Length of 5' end seq. 567
3' end seq. ID CFB689Z
3' end seq. 
>CFB689Z.Seq
----------TTAATAATCTCAGTGGTGAACAACAACCACAACAACAACAATATGTTAGT
CAACCACAAGAAGACATTGTAAATAGAGAACATAGTGTGCCAGATAATGAAAGAAGTAAA
ACCTCTGTTGTTGCATCAATTATTGCAGCAGGTTATAGTGTTGGACAAGACGCTGCCATT
AAAGCACGTCAAGTTGATGAAGAACATATGATTTCATTAAAACTTAAAGTTGGAGCTGAA
GCTGTCAAAGCAAAAGCAAATGAAATTGATAATAACCTTCACATTTCTGAGAGTGCCGCT
GCCATTAAGGGTGCAGTTGTAGAGAGAGCAAATGCACTCGATGAAAGATTCCAAATCTCA
GGTTTCTTTAAGAGTGCAAGTGATATGATCTCTCAACAAGCTTCCAATTTAATGAAAGCA
GCCGAAGAAAATAGTACAGTTTCACCAATCGTAAATAAAGTTTCAAGTTTTGGTACTTTT
ATTANNCAAGAAGTTCAACAAATTC
Length of 3' end seq. 495
Connected seq. ID CFB689P
Connected seq. 
>CFB689P.Seq
AAAAAAACTNAAACAACACACACTTACACAATATATTTACTATTTTAAATTATATCTAAA
TCCGACAACAACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATATA
AAATAATGAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTA
AAACAGTTTCAGATTTTTTCTCATTTTGTGGAAGAATTGTTGATTTATTTTTAAGAAATG
ACCCAACTGGTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAA
CAGCTTTATTATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTA
CACCAGAATTAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATC
TCAGTGGTGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTG
TAAATAGAGAACATAGTGTGCCAGATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCAA
TTATTGCAGCAGGTTATAGTGTTGGAC----------TTAATAATCTCAGTGGTGAACAA
CAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTGTAAATAGAGAACAT
AGTGTGCCAGATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCAATTATTGCAGCAGGT
TATAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGATGAAGAACATATGATT
TCATTAAAACTTAAAGTTGGAGCTGAAGCTGTCAAAGCAAAAGCAAATGAAATTGATAAT
AACCTTCACATTTCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTTGTAGAGAGAGCAAAT
GCACTCGATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTGATATGATCTCT
CAACAAGCTTCCAATTTAATGAAAGCAGCCGAAGAAAATAGTACAGTTTCACCAATCGTA
AATAAAGTTTCAAGTTTTGGTACTTTTATTANNCAAGAAGTTCAACAAATTC
Length of connected seq. 1062
Full length Seq ID CFB689E
Full length Seq. 
>CFB689E.Seq
AAAAAAACTNAAACAACACACACTTACACAATATATTTACTATTTTAAATTATATCTAAA
TCCGACAACAACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATATA
AAATAATGAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTA
AAACAGTTTCAGATTTTTTCTCATTTTGTGGAAGAATTGTTGATTTATTTTTAAGAAATG
ACCCAACTGGTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAA
CAGCTTTATTATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTA
CACCAGAATTAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATC
TCAGTGGTGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTG
TAAATAGAGAACATAGTGTGCCAGATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCAA
TTATTGCAGCAGGTTATAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGATG
AAGAACATATGATTTCATTAAAACTTAAAGTTGGAGCTGAAGCTGTCAAAGCAAAAGCAA
ATGAAATTGATAATAACCTTCACATTTCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTTG
TAGAGAGAGCAAATGCACTCGATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAA
GTGATATGATCTCTCAACAAGCTTCCAATTTAATGAAAGCAGCCGAAGAAAATAGTACAG
TTTCACCAATCGTAAATAAAGTTTCAAGTTTTGGTACTTTTATTANNCAAGAAGTTCAAC
AAATTC
Length of full length seq. 906