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Dicty_cDB
Contig List  |   Clone List  |   cDNA Library List
Atlas
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97337 Found
1 2 3 .. 6490

Library Clone ID Atlas ID NBRP ID dictyBase ID Link to Contig Representative seq. ID 5' end seq. ID Length of 5' end seq. 3' end seq. ID Length of 3' end seq. Connected seq. ID Length of connected seq. Full length Seq ID Length of full length seq.

AF
(Link to library)

AFA103
(Link to dictyBase)

 - - -

Contig-U16408-1

AFA103P
(Link to Original site)

AFA103F

473

AFA103Z

602

AFA103P

1075

-

-
Show
AFA103

AF
(Link to library)

 

AFA103
(Link to dictyBase)

 

-  

-  

-  

Contig-U16408-1

 

http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFA1-A/AFA103Q.Seq.d/

 

AFA103P
(Link to Original site)

 

 

>AFA103 (AFA103Q) /CSM/AF/AFA1-A/AFA103Q.Seq.d/

AATCAACAAGNAATTAATCAATTATGAATTGAATTTACAAGAAGATCAAGAACAATATGA

ACTTTTATTAGATCAACTCTATGATGAACAACAACAACAACCACAAAAAGTTTCAAATAA

ACAACAACTTCAAGAACAACAAATTAATTCACCCGAGGATATTCAATATCAATTAAATCA

TTTAAATCAACCATTCCAAGATGACTATCATAATGATCAAACTGAAGAATTAAAAGATGA

TGATTATAATTTTAATGATCAACAAATTAACAATGGTCAATTTGAAAATAATGTTGAAGA

ATTTCCTGATTTAAATGATGCTAATGATAATTTTGAACAAGTTAACAACAACAACAACAA

CATCAATAATAATAACAATAACAACTTTAAAGTTGATAAATCAAAGAAAAGTGCTCAACA

AGTTGAAATTGCTTTAGAGAATGAAAGACTTTATCTTCAAGAAGTTGAAGATGXXXXXXX

XXXTTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATG

GTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATG

AACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGA

ATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAAC

AACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAAC

AACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAAC

AAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTG

AATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAAC

AATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAG

AACAACAAGATAAATTAANNCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAAAC

AAAAA

 

2001. 6. 1

 

 

INKXLINYELNLQEDQEQYELLLDQLYDEQQQQPQKVSNKQQLQEQQINSPEDIQYQLNH

LNQPFQDDYHNDQTEELKDDDYNFNDQQINNGQFENNVEEFPDLNDANDNFEQVNNNNNN

INNNNNNNFKVDKSKKSAQQVEIALENERLYLQEVED---



---TNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLE

ENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKI

QQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQI

QEQQDKLXQEKNQQLLEQEQKQK

 

 

Frame A:

nqqxinql*ieftrrsrti*tfirstl**ttttttksfk*tttsrttn*ftrgysisiks

fkstipr*ls**sn*rikr**l*f**stn*qwsi*k*c*ris*fk*c***f*ts*qqqqq

hq***q*ql*s**ikekcsts*ncfre*ktlssrs*r---



---lpmnkmplnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsyl

krmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkk

fnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnk

sknnkin*xkkkinny*nknknk



Frame B:

INKXLINYELNLQEDQEQYELLLDQLYDEQQQQPQKVSNKQQLQEQQINSPEDIQYQLNH

LNQPFQDDYHNDQTEELKDDDYNFNDQQINNGQFENNVEEFPDLNDANDNFEQVNNNNNN

INNNNNNNFKVDKSKKSAQQVEIALENERLYLQEVED---



---yq*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*

re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketkn

strercclle*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttn

prttr*ixxrkkstiirtrtktk



Frame C:

stxn*simn*iykkiknnmnfy*insmmnnnnnhkkfqinnnfknnklihprifnin*ii

*inhskmtiimiklkn*kmmiiilminkltmvnlkimlknfli*mmlmiilnkltttttt

siiitittlklinqrkvlnklkll*rmkdfifkklkm---



---TNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLE

ENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKI

QQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQI

QEQQDKLXQEKNQQLLEQEQKQK

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



AFA103 (AFA103Q) /CSM/AF/AFA1-A/AFA103Q.Seq.d/                        595   e-169

VHG846 (VHG846Q) /CSM/VH/VHG8-B/VHG846Q.Seq.d/                        567   e-160

SLI803 (SLI803Q) /CSM/SL/SLI8-A/SLI803Q.Seq.d/                        567   e-160

SLI655 (SLI655Q) /CSM/SL/SLI6-C/SLI655Q.Seq.d/                        567   e-160

SLH374 (SLH374Q) /CSM/SL/SLH3-D/SLH374Q.Seq.d/                        567   e-160

SLH142 (SLH142Q) /CSM/SL/SLH1-B/SLH142Q.Seq.d/                        567   e-160

SLG381 (SLG381Q) /CSM/SL/SLG3-D/SLG381Q.Seq.d/                        567   e-160

SLC743 (SLC743Q) /CSM/SL/SLC7-B/SLC743Q.Seq.d/                        567   e-160

SLB365 (SLB365Q) /CSM/SL/SLB3-C/SLB365Q.Seq.d/                        567   e-160

SLA333 (SLA333Q) /CSM/SL/SLA3-B/SLA333Q.Seq.d/                        567   e-160

 

2009. 4. 3

 

 


                                                               Score     E

Sequences producing significant alignments:                    (bits)  Value  N



U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   535  0.0  6

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127  2e-25  10

AC115576|AC115576.1 Dictyostelium discoideum chromosome 2 map 5868742-5900083 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.   127  1e-24  3

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    40  7e-05  14

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38  2e-04  15

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    38  2e-04  13

AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    34  0.001  11

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    38  0.003  12

AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    38  0.008  10

AC123572|AC123572.13 Medicago truncatula clone mth2-2b2, complete sequence.    34  0.009  8

 

2003. 7.22

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   202   2e-50

AE001401_2(AE001401|pid:none) Plasmodium falciparum 3D7 chromoso...    39   0.39

AL034557_42(AL034557|pid:none) Plasmodium falciparum MAL4P1.           37   0.87

AL844506_226(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.1

AL844509_185(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.1

CP000246_1573(CP000246|pid:none) Clostridium perfringens ATCC 13...    37   1.1

CR382399_52(CR382399|pid:none) Plasmodium falciparum chromosome ...    37   1.1

AL034559_18(AL034559|pid:none) Plasmodium falciparum MAL3P7, com...    36   1.9

EF568108_62(EF568108|pid:none) Glossina pallidipes salivary glan...    36   2.5

AF111943_1(AF111943|pid:none) Dictyostelium discoideum AX4 devel...    36   2.5

 

2009. 3.25

 

 


 psg: 0.41  gvh: 0.35  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00

 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00

 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00

 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00

 m3a: 0.00  m3b: 0.00  m_ : 1.00 



	 40.0 %: nuclear

	 32.0 %: cytoplasmic

	 16.0 %: mitochondrial

	  4.0 %: cytoskeletal

	  4.0 %: plasma membrane

	  4.0 %: extracellular, including cell wall



>> prediction for AFA103 is nuc

 

AFA103F

 

 

>AFA103F.Seq

AATCAACAAGNAATTAATCAATTATGAATTGAATTTACAAGAAGATCAAGAACAATATGA

ACTTTTATTAGATCAACTCTATGATGAACAACAACAACAACCACAAAAAGTTTCAAATAA

ACAACAACTTCAAGAACAACAAATTAATTCACCCGAGGATATTCAATATCAATTAAATCA

TTTAAATCAACCATTCCAAGATGACTATCATAATGATCAAACTGAAGAATTAAAAGATGA

TGATTATAATTTTAATGATCAACAAATTAACAATGGTCAATTTGAAAATAATGTTGAAGA

ATTTCCTGATTTAAATGATGCTAATGATAATTTTGAACAAGTTAACAACAACAACAACAA

CATCAATAATAATAACAATAACAACTTTAAAGTTGATAAATCAAAGAAAAGTGCTCAACA

AGTTGAAATTGCTTTAGAGAATGAAAGACTTTATCTTCAAGAAGTTGAAGATG-------

---

 

473

 

AFA103Z

 

 

>AFA103Z.Seq

----------TTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATT

GAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGAT

GAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTT

GAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAA

AATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATC

GTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAA

ATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTG

GATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAG

AAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAA

ATCCAAGAACAACAAGATAAATTAANNCAAGAAAAAAATCAACAATTATTAGAACAAGAA

CAAAAACAAAAA

 

602

 

AFA103P

 

 

>AFA103P.Seq

AATCAACAAGNAATTAATCAATTATGAATTGAATTTACAAGAAGATCAAGAACAATATGA

ACTTTTATTAGATCAACTCTATGATGAACAACAACAACAACCACAAAAAGTTTCAAATAA

ACAACAACTTCAAGAACAACAAATTAATTCACCCGAGGATATTCAATATCAATTAAATCA

TTTAAATCAACCATTCCAAGATGACTATCATAATGATCAAACTGAAGAATTAAAAGATGA

TGATTATAATTTTAATGATCAACAAATTAACAATGGTCAATTTGAAAATAATGTTGAAGA

ATTTCCTGATTTAAATGATGCTAATGATAATTTTGAACAAGTTAACAACAACAACAACAA

CATCAATAATAATAACAATAACAACTTTAAAGTTGATAAATCAAAGAAAAGTGCTCAACA

AGTTGAAATTGCTTTAGAGAATGAAAGACTTTATCTTCAAGAAGTTGAAGATG-------

---TTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATG

GTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATG

AACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGA

ATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAAC

AACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAAC

AACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAAC

AAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTG

AATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAAC

AATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAG

AACAACAAGATAAATTAANNCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAAAC

AAAAA

 

1075

 

-

 

 

-

 

-

 

AF
(Link to library)

AFA105
(Link to dictyBase)

 - - -

Contig-U16268-1

AFA105F
(Link to Original site)

AFA105F

310

-

-

-

-

-

-
Show
AFA105

AF
(Link to library)

 

AFA105
(Link to dictyBase)

 

-  

-  

-  

Contig-U16268-1

 

http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFA1-A/AFA105Q.Seq.d/

 

AFA105F
(Link to Original site)

 

 

>AFA105 (AFA105Q) /CSM/AF/AFA1-A/AFA105Q.Seq.d/

ACTGTTGGCCTACTGGTTTTTTTATCGCCTCACTTTTTATTTTTGTATTATATTCTCTCT

TTATTTCTTTTCTATATATAGATAAATTTTTTTTAGAAAAACTAAAAAAAAAAACCTCAA

ACAATTAANACAAAANGGTAAACATTGGNGGAACTCANGAAAAANGNACTGNATGTGCTA

AAACTGTNTACTTAACAGAAAAGATTGTAGTTGAAGATAAAGAAGATAAGAAAACTTTCC

ACAAATTATGTTTAAAANGTNCTCACTGTANGCTTACATTAAGTCTTGGNAACTATGCAT

NATTAAANGGXXXXXXXXXX

 

2001. 6. 1

 

 

cwptgffiaslfifvlyslfisflyidkffleklkkktsnn*XKXVNIGGTXEKXTXCAK

TVYLTEKIVVEDKEDKKTFHKLCLKXXHCXLTLSLGNYAXLX---

 

 

Frame A:

tvgllvflsphflflyyilslflfyi*inff*kn*kkkpqtixtkx*tlxelxkxxlxvl

klxt*qkrl*lkikkirklstnyv*xvltvxlh*vlxtmhx*x---



Frame B:

llaywffyrltfyfciifslyffsiyr*iffrktkkknlkqlxqxgkhwxnsxkxxxmc*

ncxlnrkdcs*r*rr*enfpqimfkxxslxayikswxlcxik---



Frame C:

cwptgffiaslfifvlyslfisflyidkffleklkkktsnn*XKXVNIGGTXEKXTXCAK

TVYLTEKIVVEDKEDKKTFHKLCLKXXHCXLTLSLGNYAXLX---

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



VFK172 (VFK172Q) /CSM/VF/VFK1-C/VFK172Q.Seq.d/                        305   2e-82

VFJ444 (VFJ444Q) /CSM/VF/VFJ4-B/VFJ444Q.Seq.d/                        305   2e-82

VFG695 (VFG695Q) /CSM/VF/VFG6-D/VFG695Q.Seq.d/                        305   2e-82

SSM637 (SSM637Q) /CSM/SS/SSM6-B/SSM637Q.Seq.d/                        305   2e-82

SFL216 (SFL216Q) /CSM/SF/SFL2-A/SFL216Q.Seq.d/                        305   2e-82

SFK508 (SFK508Q) /CSM/SF/SFK5-A/SFK508Q.Seq.d/                        305   2e-82

SFK142 (SFK142Q) /CSM/SF/SFK1-B/SFK142Q.Seq.d/                        305   2e-82

SFI831 (SFI831Q) /CSM/SF/SFI8-B/SFI831Q.Seq.d/                        305   2e-82

SFH103 (SFH103Q) /CSM/SF/SFH1-A/SFH103Q.Seq.d/                        305   2e-82

SFF706 (SFF706Q) /CSM/SF/SFF7-A/SFF706Q.Seq.d/                        305   2e-82

 

2001.11.24

 

 


                                                               Score     E

Sequences producing significant alignments:                    (bits)  Value  N



AC133934|AC133934.1 Mus musculus chromosome UNK clone RP24-361B1, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  1.0  1

AP005452|AP005452.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E03.    42  1.4  3

AC135162|AC135162.14 Medicago truncatula clone mth2-9b6, WORKING DRAFT SEQUENCE, 6 unordered pieces.    38  3.9  2

BH150649|BH150649.1 ENTPO24TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  4.0  1

AB080242|AB080242.1 Cryptomeria japonica Cry j I gene, promoter sequence No.53.    42  4.0  1

AP001174|AP001174.2 Homo sapiens genomic DNA, chromosome 18q12 clone:RP11-674K17, WORKING DRAFT SEQUENCE, 23 unordered pieces.    42  4.0  1

AY112679|AY112679.1 Rana pipiens clone FROS-GC2b guanylate cyclase 2-like mRNA, complete sequence.    42  4.0  1

AZ669908|AZ669908.1 ENTFH15TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  4.0  1

BH134379|BH134379.1 ENTOL48TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  4.0  1

AP002503|AP002503.1 Homo sapiens genomic DNA, chromosome 18q12 clone:RP11-746A20, WORKING DRAFT SEQUENCE, 21 unordered pieces.    42  4.0  1

 

2003. 7.22

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



AC135208_4(AC135208|pid:none) Oryza sativa (japonica cultivar-gr...    44   0.002

AC160095_6(AC160095|pid:none) Solanum lycopersicum clone BB, com...    41   0.011

EU186001_1(EU186001|pid:none) Lilium longiflorum LIM1 mRNA, comp...    41   0.014

EU956215_1(EU956215|pid:none) Zea mays clone 1559141 pollen-spec...    41   0.014

AM475696_4(AM475696|pid:none) Vitis vinifera contig VV78X042996....    40   0.018

AB079511_1(AB079511|pid:none) Populus kitakamiensis Pklim1 gene ...    40   0.018

EU482903_1(EU482903|pid:none) Pinus taeda LIM2 transcription fac...    40   0.018

EF145390_1(EF145390|pid:none) Populus trichocarpa clone WS01124_...    40   0.018

AF116851_1(AF116851|pid:none) Nicotiana tabacum LIM domain prote...    40   0.018

EF035039_1(EF035039|pid:none) Populus tremula x Populus alba LIM...    40   0.018

 

2009. 3.25

 

 


 psg: 0.75  gvh: 0.57  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00

 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00

 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00

 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00

 m3a: 0.00  m3b: 0.00  m_ : 1.00 



	 40.0 %: cytoplasmic

	 28.0 %: nuclear

	 12.0 %: cytoskeletal

	 12.0 %: mitochondrial

	  4.0 %: vacuolar

	  4.0 %: Golgi



>> prediction for AFA105 is cyt

 

AFA105F

 

 

>AFA105F.Seq

ACTGTTGGCCTACTGGTTTTTTTATCGCCTCACTTTTTATTTTTGTATTATATTCTCTCT

TTATTTCTTTTCTATATATAGATAAATTTTTTTTAGAAAAACTAAAAAAAAAAACCTCAA

ACAATTAANACAAAANGGTAAACATTGGNGGAACTCANGAAAAANGNACTGNATGTGCTA

AAACTGTNTACTTAACAGAAAAGATTGTAGTTGAAGATAAAGAAGATAAGAAAACTTTCC

ACAAATTATGTTTAAAANGTNCTCACTGTANGCTTACATTAAGTCTTGGNAACTATGCAT

NATTAAANGG----------

 

310

 

-

 

 

-

 

-

 

-

 

 

-

 

-

 

-

 

 

-

 

-

 

AF
(Link to library)

AFA107
(Link to dictyBase)

 - - -

Contig-U16280-1

AFA107P
(Link to Original site)

AFA107F

552

AFA107Z

652

AFA107P

1204

-

-
Show
AFA107

AF
(Link to library)

 

AFA107
(Link to dictyBase)

 

-  

-  

-  

Contig-U16280-1

 

http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFA1-A/AFA107Q.Seq.d/

 

AFA107P
(Link to Original site)

 

 

>AFA107 (AFA107Q) /CSM/AF/AFA1-A/AFA107Q.Seq.d/

ACTGTTGGCCTACTGGNATTGTCATAATAATATTATAAAATTCAAAGATGTCTAAAGTAG

TCCGTAGTAGTAAATATCGTCATGTTTTTGCAGCACAACCAAAAAAAGAAGAGTGCTATC

AAAACTTAAAAGTTACCAAATCAGCATGGGATAGTAATTACGTTGCAGCCAACACTAGAT

ACTTTGGTGTTATTTGGGATGCTGCAGGTGGTGGTTCATTCGCTGTTATTCCACATGAGG

CTTCAGGTAAAACCACATCAGTTCCATTATTCAATGGTCATAAGAGTGCAGTTTTAGATA

TTGCTTTCCACCCATTCAATGAAAACCTCGTTGGTTCAGTTTCTGAAGATTGTAACATTT

GTATTTGGGGTATCCCAGAAGGTGGTTTAACCGACTCAATCTCAACCCCACTCCAAACTT

TATCTGGTCACAAGAGAAAGGTTGGTACCATCTCATTCAATCCAGTTGCTGATAATGTTG

CCGTTACCTCATCTGGTGATTTCTTAGTTAAAACTTGGGATGTTGAACAAGGTAAGAATT

TAACCACTGTTGXXXXXXXXXXGTTTCTCAAAGACCTCTGAAAGAGAACTCCACATTTAT

GATCCACGTGCTTTCACCACCCCCACTCTCTGCTCAAGTCGTCGATTCTGCCTCTGGTCT

CTTAATGCCATTCTATGATGCTGACAATTCAATTTTATACCTTGCTGGTAAAGGTGATGG

TAACATCAGATACTACGAATTGGTCGATGAATCACCATACATTCATTTCTTAAGTGAATT

CAAATCTGCCACCCCACAAAGAGGTCTTTGCTTCTTACCAAAGAGATGTCTCAACACCTC

TGAATGTGAAATCGCTAGAGGTCTCAAAGTTACTCCATTCACCGTTGAACCAATCTCATT

CCGTGTACCAAGAAAATCTGATATCTTCCAAGACGATATCTACCCAGATACCTACGCTGG

TGAACCATCACTCACTGCCGAACAATGGGTTTCAGGTACCAATGCTGAACCAAAGACTGT

TAGTTTAGCTGGTGGTTTTGTCAAAAAAGCTTCAGCTGTTGAATTCAAACCAGTCGTTCA

AGTTCAAGAAGGTCCAAAGAATGAAAAAGAACTCCGTGAAGAATACGAAAAATTAAAGAT

TCGTGTTGCTTACTTAGAATNCTGAAATCGTTAAAAAGGATGCCAAAACAAAGAACTCAC

CAACTAAATTAATA

 

2001. 6. 1

 

 

cwptgiviiil*NSKMSKVVRSSKYRHVFAAQPKKEECYQNLKVTKSAWDSNYVAANTRY

FGVIWDAAGGGSFAVIPHEASGKTTSVPLFNGHKSAVLDIAFHPFNENLVGSVSEDCNIC

IWGIPEGGLTDSISTPLQTLSGHKRKVGTISFNPVADNVAVTSSGDFLVKTWDVEQGKNL

TTV---



---VSQRPLKENSTFMIHVLSPPPLSAQVVDSASGLLMPFYDADNSILYLAGKGDGNIRY

YELVDESPYIHFLSEFKSATPQRGLCFLPKRCLNTSECEIARGLKVTPFTVEPISFRVPR

KSDIFQDDIYPDTYAGEPSLTAEQWVSGTNAEPKTVSLAGGFVKKASAVEFKPVVQVQEG

PKNEKELREEYEKLKIRVAYLEX*nr*kgcqnkeltn*in

 

 

Frame A:

tvgllxls**yykiqrclk*svvvnivmflqhnqkkksaikt*klpnqhgivitlqptld

tlvlfgmlqvvvhsllfhmrlqvkphqfhysmvirvqf*illsthsmktslvqflkivtf

vfgvsqkvv*ptqsqphsklylvtrerlvpshsiqllimlplphlvis*lklgmlnkvri

*pll---



---VSQRPLKENSTFMIHVLSPPPLSAQVVDSASGLLMPFYDADNSILYLAGKGDGNIRY

YELVDESPYIHFLSEFKSATPQRGLCFLPKRCLNTSECEIARGLKVTPFTVEPISFRVPR

KSDIFQDDIYPDTYAGEPSLTAEQWVSGTNAEPKTVSLAGGFVKKASAVEFKPVVQVQEG

PKNEKELREEYEKLKIRVAYLEX*nr*kgcqnkeltn*in



Frame B:

llaywxchnniikfkdv*ssp***isscfcsttkkrrvlsklksyqismg**lrcsqh*i

lwcylgccrwwfircyst*gfr*nhissiiqws*ecsfrycfppiq*kprwfsf*rl*hl

ylgyprrwfnrlnlnptpnfiwsqekgwyhliqssc**ccryliw*fls*nlgc*tr*ef

nhc---



---flkdl*krtphl*stcfhhphsllkssilplvs*chsmmltiqfytllvkvmvtsdt

tnwsmnhhtfis*vnsnlpphkevfasyqrdvstplnvkslevskllhsplnqshsvyqe

nlissktistqiptlvnhhslpnngfqvpmlnqrllv*lvvlskklqllnsnqsfkfkkv

qrmkknsvkntkn*rfvllt*nxeivkkdaktknsptkli



Frame C:

cwptgiviiil*NSKMSKVVRSSKYRHVFAAQPKKEECYQNLKVTKSAWDSNYVAANTRY

FGVIWDAAGGGSFAVIPHEASGKTTSVPLFNGHKSAVLDIAFHPFNENLVGSVSEDCNIC

IWGIPEGGLTDSISTPLQTLSGHKRKVGTISFNPVADNVAVTSSGDFLVKTWDVEQGKNL

TTV---



---fsktserelhiydprafttptlcssrrfclwslnail*c*qfnfipcw*r*w*hqil

rigr*itihsflk*iqichptkrsllltkemsqhl*m*nr*rsqsysihr*tnlipctkk

i*ylprrylprylrw*tithcrtmgfryqc*tkdc*fswwfcqksfsc*iqtsrsssrrs

ke*krtp*rirkikdsccllrxlkslkrmpkqrthqln*

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



AFA107 (AFA107Q) /CSM/AF/AFA1-A/AFA107Q.Seq.d/                       2294   0.0

AFF626 (AFF626Q) /CSM/AF/AFF6-B/AFF626Q.Seq.d/                       1273   0.0

VFM855 (VFM855Q) /CSM/VF/VFM8-C/VFM855Q.Seq.d/                       1263   0.0

VFL504 (VFL504Q) /CSM/VF/VFL5-A/VFL504Q.Seq.d/                       1263   0.0

VFL210 (VFL210Q) /CSM/VF/VFL2-A/VFL210Q.Seq.d/                       1263   0.0

VFK602 (VFK602Q) /CSM/VF/VFK6-A/VFK602Q.Seq.d/                       1263   0.0

VFH766 (VFH766Q) /CSM/VF/VFH7-C/VFH766Q.Seq.d/                       1263   0.0

VFE295 (VFE295Q) /CSM/VF/VFE2-D/VFE295Q.Seq.d/                       1263   0.0

SFK894 (SFK894Q) /CSM/SF/SFK8-D/SFK894Q.Seq.d/                       1263   0.0

SFJ462 (SFJ462Q) /CSM/SF/SFJ4-C/SFJ462Q.Seq.d/                       1263   0.0

 

2004.12.25

 

 


                                                               Score     E

Sequences producing significant alignments:                    (bits)  Value  N



X61480|X61480.1 D.discoideum mRNA for coronin.                  1063  0.0  6

CB928919|CB928919.1 ABA1_38_B07.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor cDNA clone ABA1_38_B07_A012 3', mRNA sequence.    68  3e-12  3

CD210549|CD210549.1 HS1_48_H10.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_48_H10_A012 3', mRNA sequence.    68  4e-12  3

CD235972|CD235972.1 SS1_25_F03.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone SS1_25_F03_A012 3', mRNA sequence.    64  8e-09  3

AV803042|AV803042.1 Arabidopsis thaliana cDNA clone:RAFL09-34-C08, 3'-end.    52  4e-04  2

AZ542600|AZ542600.1 ENTET32TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    36  6e-04  3

BH162152|BH162152.1 ENTTF04TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    56  0.001  1

AL428709|AL428709.1 clone BA0AB027D02 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    40  0.010  2

BH132994|BH132994.1 ENTNE76TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    36  0.15  2

AX595430|AX595430.1 Sequence 1084 from Patent EP1258494.          40  0.31  2

 

2003. 7.22

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



S18663(S18663) coronin - slime mold (Dictyostelium discoideum)  ...   344   4e-93

BC141247_1(BC141247|pid:none) Mus musculus coronin 6, mRNA (cDNA...   167   3e-75

AY525781_1(AY525781|pid:none) Acanthamoeba healyi coronin mRNA, ...   186   1e-45

AP006852_172(AP006852|pid:none) Candida albicans genomic DNA, ch...   176   1e-42

FM992694_169(FM992694|pid:none) Candida dubliniensis CD36 chromo...   176   2e-42

(Q6QEF8) RecName: Full=Coronin-6;                                     169   7e-42

AF140359_1(AF140359|pid:none) Rattus norvegicus coronin relative...   169   2e-41

(Q920J3) RecName: Full=Coronin-6;  &BC098656_1(BC098656|pid:none)     169   2e-41

(Q920M5) RecName: Full=Coronin-6; AltName: Full=Coronin-like pro...   167   2e-41

AK096431_1(AK096431|pid:none) Homo sapiens cDNA FLJ39112 fis, cl...   169   2e-41

 

2009. 3.25

 

 


 psg: 0.58  gvh: 0.32  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.42  mip: 0.04

 nuc: 0.02  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00

 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00

 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00

 m3a: 0.00  m3b: 0.00  m_ : 1.00 



	 40.0 %: mitochondrial

	 36.0 %: nuclear

	 16.0 %: cytoplasmic

	  8.0 %: cytoskeletal



>> prediction for AFA107 is mit

 

AFA107F

 

 

>AFA107F.Seq

ACTGTTGGCCTACTGGNATTGTCATAATAATATTATAAAATTCAAAGATGTCTAAAGTAG

TCCGTAGTAGTAAATATCGTCATGTTTTTGCAGCACAACCAAAAAAAGAAGAGTGCTATC

AAAACTTAAAAGTTACCAAATCAGCATGGGATAGTAATTACGTTGCAGCCAACACTAGAT

ACTTTGGTGTTATTTGGGATGCTGCAGGTGGTGGTTCATTCGCTGTTATTCCACATGAGG

CTTCAGGTAAAACCACATCAGTTCCATTATTCAATGGTCATAAGAGTGCAGTTTTAGATA

TTGCTTTCCACCCATTCAATGAAAACCTCGTTGGTTCAGTTTCTGAAGATTGTAACATTT

GTATTTGGGGTATCCCAGAAGGTGGTTTAACCGACTCAATCTCAACCCCACTCCAAACTT

TATCTGGTCACAAGAGAAAGGTTGGTACCATCTCATTCAATCCAGTTGCTGATAATGTTG

CCGTTACCTCATCTGGTGATTTCTTAGTTAAAACTTGGGATGTTGAACAAGGTAAGAATT

TAACCACTGTTG----------

 

552

 

AFA107Z

 

 

>AFA107Z.Seq

----------GTTTCTCAAAGACCTCTGAAAGAGAACTCCACATTTATGATCCACGTGCT

TTCACCACCCCCACTCTCTGCTCAAGTCGTCGATTCTGCCTCTGGTCTCTTAATGCCATT

CTATGATGCTGACAATTCAATTTTATACCTTGCTGGTAAAGGTGATGGTAACATCAGATA

CTACGAATTGGTCGATGAATCACCATACATTCATTTCTTAAGTGAATTCAAATCTGCCAC

CCCACAAAGAGGTCTTTGCTTCTTACCAAAGAGATGTCTCAACACCTCTGAATGTGAAAT

CGCTAGAGGTCTCAAAGTTACTCCATTCACCGTTGAACCAATCTCATTCCGTGTACCAAG

AAAATCTGATATCTTCCAAGACGATATCTACCCAGATACCTACGCTGGTGAACCATCACT

CACTGCCGAACAATGGGTTTCAGGTACCAATGCTGAACCAAAGACTGTTAGTTTAGCTGG

TGGTTTTGTCAAAAAAGCTTCAGCTGTTGAATTCAAACCAGTCGTTCAAGTTCAAGAAGG

TCCAAAGAATGAAAAAGAACTCCGTGAAGAATACGAAAAATTAAAGATTCGTGTTGCTTA

CTTAGAATNCTGAAATCGTTAAAAAGGATGCCAAAACAAAGAACTCACCAACTAAATTAA

TA

 

652

 

AFA107P

 

 

>AFA107P.Seq

ACTGTTGGCCTACTGGNATTGTCATAATAATATTATAAAATTCAAAGATGTCTAAAGTAG

TCCGTAGTAGTAAATATCGTCATGTTTTTGCAGCACAACCAAAAAAAGAAGAGTGCTATC

AAAACTTAAAAGTTACCAAATCAGCATGGGATAGTAATTACGTTGCAGCCAACACTAGAT

ACTTTGGTGTTATTTGGGATGCTGCAGGTGGTGGTTCATTCGCTGTTATTCCACATGAGG

CTTCAGGTAAAACCACATCAGTTCCATTATTCAATGGTCATAAGAGTGCAGTTTTAGATA

TTGCTTTCCACCCATTCAATGAAAACCTCGTTGGTTCAGTTTCTGAAGATTGTAACATTT

GTATTTGGGGTATCCCAGAAGGTGGTTTAACCGACTCAATCTCAACCCCACTCCAAACTT

TATCTGGTCACAAGAGAAAGGTTGGTACCATCTCATTCAATCCAGTTGCTGATAATGTTG

CCGTTACCTCATCTGGTGATTTCTTAGTTAAAACTTGGGATGTTGAACAAGGTAAGAATT

TAACCACTGTTG----------GTTTCTCAAAGACCTCTGAAAGAGAACTCCACATTTAT

GATCCACGTGCTTTCACCACCCCCACTCTCTGCTCAAGTCGTCGATTCTGCCTCTGGTCT

CTTAATGCCATTCTATGATGCTGACAATTCAATTTTATACCTTGCTGGTAAAGGTGATGG

TAACATCAGATACTACGAATTGGTCGATGAATCACCATACATTCATTTCTTAAGTGAATT

CAAATCTGCCACCCCACAAAGAGGTCTTTGCTTCTTACCAAAGAGATGTCTCAACACCTC

TGAATGTGAAATCGCTAGAGGTCTCAAAGTTACTCCATTCACCGTTGAACCAATCTCATT

CCGTGTACCAAGAAAATCTGATATCTTCCAAGACGATATCTACCCAGATACCTACGCTGG

TGAACCATCACTCACTGCCGAACAATGGGTTTCAGGTACCAATGCTGAACCAAAGACTGT

TAGTTTAGCTGGTGGTTTTGTCAAAAAAGCTTCAGCTGTTGAATTCAAACCAGTCGTTCA

AGTTCAAGAAGGTCCAAAGAATGAAAAAGAACTCCGTGAAGAATACGAAAAATTAAAGAT

TCGTGTTGCTTACTTAGAATNCTGAAATCGTTAAAAAGGATGCCAAAACAAAGAACTCAC

CAACTAAATTAATA

 

1204

 

-

 

 

-

 

-

 

AF
(Link to library)

AFA110
(Link to dictyBase)

 - - -

Contig-U14918-1

AFA110E
(Link to Original site)

AFA110F

903

AFA110Z

622

AFA110P

1515

AFA110E

1383
Show
AFA110

AF
(Link to library)

 

AFA110
(Link to dictyBase)

 

-  

-  

-  

Contig-U14918-1

 

http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFA1-A/AFA110Q.Seq.d/

 

AFA110E
(Link to Original site)

 

 

>AFA110 (AFA110Q) /CSM/AF/AFA1-A/AFA110Q.Seq.d/

ACTGTTGGCCTACTGGNATATGAAAAAAATATATATTTAGAACAAACGATGAAAAGTAAT

ATAAATAAAATAGTTGTACTATTTTTCCTATTTCTTGGAATTATAAACGCATATAAACAT

CATTTAGAAGTTAATAATGATGATAGAAAATTATTTGCAATTGAAGGTTTTGGTTTTGGT

GATAAAGGTACATTCTCAATTAAAGTAACAAATTGGACTTTAAATAATGGAGATGGTAAA

AAAACCAAAGTAGATGATAAGGTAGCATTTTTTTTTACGTATAACAGATTCAGATGCAGC

AAGACATGTAGATGAATATAGTGTTACAAAATGTGATTTTGAAAGTGAGAGTCCAAGTCT

CTTATTTAGAGGTGATTCAAATGTTATTGATGATTCATTCTCACAACAATTTAAAATTTC

AGCTGAAAACGATTTACCAGGAAGGTTTTTATACATTATATTATAAAAATTGTAATCCTT

CACCTTCAAAAACAACTTTTAAATTAGTTTTAGAAGAATATAATATTGATTCAAAGGGAG

GTATTTCATGGCTCCCAATAGGTAATGCTCCATTACCAACACTTTATACATTTTTTTCAT

TATTATTATTTGCAACAGCATTAGTATGGGTTTTATTCTGCCTCAGAGGTGAGGGTAAAA

GAGTAAACTTACTTCACCATCTTTGTACAGCATATTTAGTCATTCAAGCTATTGAATTAT

TATTTGAAGCTATTGAACAACATTATATTAAATTAACAGGATCAGCAAATGGATGGAATG

TAGCATATTATATATTTGCATTTGCACAAGGTTCATTTTTCATTATTCTTTTAGCTATGA

TTGGATCAGGATGGTATTTTATTAAACCCTTCCTTTCAGATAAAGAGAAAAAGATATTTA

TGATTGTCATTCCATTACAAATTTTAGATAATATTGCATTAATCGTTGTGGATGAAGAAT

CAAGAGGTGCTGCAAATTGGATTAGTTGGAGTAATATTTTCATTTTCGTTGATTTAATTT

GTTGTTTAGCTATAATTGTTCCAATCGTTTGGTCAATGAATCATCTTAAAGATAGTGTTG

ATTCAAATAATGATAAAGTTGTTAAAAATATTCAAAAATTAAGATTATTTAGATCATTTT

ATTTGGTTGTAATTTGTTATTTATATTTCACTCGTGTTATTATTCATTTATTAAAAGCAA

CACTTCCATACAAATATATTTGGTTAGGTGAATTCTTTTCATTAACTGCTTCTTTTGCTT

TTTATTGTATTACTGGTTATCAATTCAGACCAAGTTTAGATAATCCATACTTTTATTTAC

CAACNCAAGACGACGATCACGATTTAAATGAATTAAGAGCACAATTAGAAGCGAAGATGG

TGG

 

2003. 5. 3

 

 

cwptgi*kkyifrtndek*yk*nsctifpiswnykri*tsfrs*****kiicn*rfwfw*

*ryiln*snkldfk*wrw*knqsr**gsiffyv*qiqmqqdm*MNIVLQNVILKVRVQVS

YLEVIQMLLMIHSHNNLKFQLKTIYQEGFYTLYYKNCNPSPSKTTFKLVLEEYNIDSKGG

ISWLPIGNAPLPTLYTFFSLLLFATALVWVLFCLRGEGKRVNLLHHLCTAYLVIQAIELL

FEAIEQHYIKLTGSANGWNVAYYIFAFAQGSFFIILLAMIGSGWYFIKPFLSDKEKKIFM

IVIPLQILDNIALIVVDEESRGAANWISWSNIFIFVDLICCLAIIVPIVWSMNHLKDSVD

SNNDKVVKNIQKLRLFRSFYLVVICYLYFTRVIIHLLKATLPYKYIWLGEFFSLTASFAF

YCITGYQFRPSLDNPYFYLPTQDDDHDLNELRAQLEAKMV

 

 

Frame A:

tvgllxyekniyleqtmksninkivvlfflflgiinaykhhlevnnddrklfaiegfgfg

dkgtfsikvtnwtlnngdgkktkvddkvaffftynrfrcsktcr*i*cykm*f*k*esks

li*r*fkcy**filtti*nfs*krftrkvfihyiikivilhlqkqlln*f*kniiliqre

vfhgsq*vmlhyqhfihffhyyylqqh*ygfysasevrvke*tyftifvqhi*sfkllny

ylkllnniiln*qdqqmdgm*hiiylhlhkvhfslff*l*ldqdgillnpsfqikrkryl

*lsfhykf*iilh*slwmknqevlqiglvgvifsfsli*fvv*l*lfqsfgq*iilkivl

iqimikllkifkn*dyldhfiwl*fviyislvllfiy*kqhfhtnifg*vnsfh*lllll

fivllvinsdqv*iihtfiyqxkttiti*mn*ehn*krrww



Frame B:

llaywxmkkiyi*nkr*kvi*ik*lyyfsyflel*thinii*klimmienylqlkvlvlv

ikvhsqlk*qigl*imemvkkpk*mir*hfflritdsdaarhvdeysvtkcdfesespsl

lfrgdsnviddsfsqqfkisaendlpgrflyiil*kl*sftfknnf*isfrri*y*fkgr

yfmapnr*csitntlyiffiiiicnsismgfilpqr*g*kskltspslysifshssy*ii

i*sy*ttly*inriskwmecsilyicictrfifhysfsydwirmvfy*tlpfr*rekdiy

dchsitnfr*ycinrcg*rikrcckld*le*yfhfr*fnllfsyncsnrlvness*r*c*

fk***sc*kyskikii*iilfgcnllfifhscyysfiksntsiqiylvr*ilfincffcf

llyywlsiqtkfr*sillftnxrrrsrfk*ikstirsedg



Frame C:

cwptgi*kkyifrtndek*yk*nsctifpiswnykri*tsfrs*****kiicn*rfwfw*

*ryiln*snkldfk*wrw*knqsr**gsiffyv*qiqmqqdm*MNIVLQNVILKVRVQVS

YLEVIQMLLMIHSHNNLKFQLKTIYQEGFYTLYYKNCNPSPSKTTFKLVLEEYNIDSKGG

ISWLPIGNAPLPTLYTFFSLLLFATALVWVLFCLRGEGKRVNLLHHLCTAYLVIQAIELL

FEAIEQHYIKLTGSANGWNVAYYIFAFAQGSFFIILLAMIGSGWYFIKPFLSDKEKKIFM

IVIPLQILDNIALIVVDEESRGAANWISWSNIFIFVDLICCLAIIVPIVWSMNHLKDSVD

SNNDKVVKNIQKLRLFRSFYLVVICYLYFTRVIIHLLKATLPYKYIWLGEFFSLTASFAF

YCITGYQFRPSLDNPYFYLPTQDDDHDLNELRAQLEAKMV

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



AFA110 (AFA110Q) /CSM/AF/AFA1-A/AFA110Q.Seq.d/                       2551   0.0

VFF274 (VFF274Q) /CSM/VF/VFF2-D/VFF274Q.Seq.d/                       1229   0.0

CHB111 (CHB111Q) /CSM/CH/CHB1-A/CHB111Q.Seq.d/                       1227   0.0

CHD609 (CHD609Q) /CSM/CH/CHD6-A/CHD609Q.Seq.d/                       1162   0.0

SSM338 (SSM338Q) /CSM/SS/SSM3-B/SSM338Q.Seq.d/                        952   0.0

SFJ242 (SFJ242Q) /CSM/SF/SFJ2-B/SFJ242Q.Seq.d/                        595   e-169

CFD863 (CFD863Q) /CSM/CF/CFD8-C/CFD863Q.Seq.d/                        416   e-115

VSD535 (VSD535Q) /CSM/VS/VSD5-B/VSD535Q.Seq.d/                        365   1e-99

VSH337 (VSH337Q) /CSM/VS/VSH3-B/VSH337Q.Seq.d/                         38   0.35

VHL424 (VHL424Q) /CSM/VH/VHL4-A/VHL424Q.Seq.d/                         38   0.35

 

2003. 5.10

 

 


                                                               Score     E

Sequences producing significant alignments:                    (bits)  Value  N



AE014848|AE014848.1 Plasmodium falciparum 3D7 chromosome 12, section 5 of 9 of the complete sequence.    36  8e-06  14

BU449953|BU449953.1 603217039F1 CSEQRBN14 Gallus gallus cDNA clone ChEST205m10 5', mRNA sequence.    62  2e-05  1

AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          38  3e-04  13

AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          38  3e-04  13

AC004157|AC004157.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    36  7e-04  16

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    38  8e-04  13

AX776003|AX776003.1 Sequence 273 from Patent WO03048202.          56  0.001  1

AR339308|AR339308.1 Sequence 799 from patent US 6569662.          56  0.001  1

AL834359|AL834359.1 Homo sapiens mRNA; cDNA DKFZp667C222 (from clone DKFZp667C222).    56  0.001  1

BM472023|BM472023.1 AGENCOURT_6464640 NIH_MGC_67 Homo sapiens cDNA clone IMAGE:5581672 5', mRNA sequence.    56  0.001  1

 

2003. 9. 7

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



AF488412_5(AF488412|pid:none) Sorghum bicolor BAC 131L1, complet...   246   1e-63

AM458653_2(AM458653|pid:none) Vitis vinifera contig VV78X008727....   245   2e-63

BT041142_1(BT041142|pid:none) Zea mays full-length cDNA clone ZM...   244   5e-63

AF391294_2(AF391294|pid:none) Branchiostoma floridae cosmid MPMG...   243   1e-62

AF488413_3(AF488413|pid:none) Oryza sativa chromosome 6 BAC 134P...   243   1e-62

BT039934_1(BT039934|pid:none) Zea mays full-length cDNA clone ZM...   242   2e-62

CR954209_11(CR954209|pid:none) Ostreococcus tauri strain OTTH059...   242   2e-62

AB017067_19(AB017067|pid:none) Arabidopsis thaliana genomic DNA,...   242   2e-62

AY086794_1(AY086794|pid:none) Arabidopsis thaliana clone 27758 m...   240   9e-62

AC016661_14(AC016661|pid:none) Arabidopsis thaliana chromosome 3...   238   5e-61

 

2009. 3.25

 

 


 psg: 0.69  gvh: 0.45  alm: 0.14  top: 0.80  tms: 0.40  mit: 0.35  mip: 0.03

 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00

 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00

 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00

 m3a: 0.00  m3b: 1.00  m_ : 0.00 



	 48.0 %: plasma membrane

	 20.0 %: endoplasmic reticulum

	 12.0 %: vacuolar

	  8.0 %: nuclear

	  4.0 %: mitochondrial

	  4.0 %: Golgi

	  4.0 %: cytoplasmic



>> prediction for AFA110 is pla

 

AFA110F

 

 

>AFA110F.Seq

ACTGTTGGCCTACTGGNATATGAAAAAAATATATATTTAGAACAAACGATGAAAAGTAAT

ATAAATAAAATAGTTGTACTATTTTTCCTATTTCTTGGAATTATAAACGCATATAAACAT

CATTTAGAAGTTAATAATGATGATAGAAAATTATTTGCAATTGAAGGTTTTGGTTTTGGT

GATAAAGGTACATTCTCAATTAAAGTAACAAATTGGACTTTAAATAATGGAGATGGTAAA

AAAACCAAAGTAGATGATAAGGTAGCATTTTTTTTTACGTATAACAGATTCAGATGCAGC

AAGACATGTAGATGAATATAGTGTTACAAAATGTGATTTTGAAAGTGAGAGTCCAAGTCT

CTTATTTAGAGGTGATTCAAATGTTATTGATGATTCATTCTCACAACAATTTAAAATTTC

AGCTGAAAACGATTTACCAGGAAGGTTTTTATACATTATATTATAAAAATTGTAATCCTT

CACCTTCAAAAACAACTTTTAAATTAGTTTTAGAAGAATATAATATTGATTCAAAGGGAG

GTATTTCATGGCTCCCAATAGGTAATGCTCCATTACCAACACTTTATACATTTTTTTCAT

TATTATTATTTGCAACAGCATTAGTATGGGTTTTATTCTGCCTCAGAGGTGAGGGTAAAA

GAGTAAACTTACTTCACCATCTTTGTACAGCATATTTAGTCATTCAAGCTATTGAATTAT

TATTTGAAGCTATTGAACAACATTATATTAAATTAACAGGATCAGCAAATGGATGGAATG

TAGCATATTATATATTTGCATTTGCACAAGGTTCATTTTTCATTATTCTTTTAGCTATGA

TTGGATCAGGATGGTATTTTATTAAACCCTTCCTTTCAGATAAAGAGAAAAAGNNNNNNN

NNN

 

903

 

AFA110Z

 

 

>AFA110Z.Seq

----------TCAGCAAATGGATGGAATGTAGCATATTATATATTTGCATTTGCACAAGG

TTCATTTTTCATTATTCTTTTAGCTATGATTGGATCAGGATGGTATTTTATTAAACCCTT

CCTTTCAGATAAAGAGAAAAAGATATTTATGATTGTCATTCCATTACAAATTTTAGATAA

TATTGCATTAATCGTTGTGGATGAAGAATCAAGAGGTGCTGCAAATTGGATTAGTTGGAG

TAATATTTTCATTTTCGTTGATTTAATTTGTTGTTTAGCTATAATTGTTCCAATCGTTTG

GTCAATGAATCATCTTAAAGATAGTGTTGATTCAAATAATGATAAAGTTGTTAAAAATAT

TCAAAAATTAAGATTATTTAGATCATTTTATTTGGTTGTAATTTGTTATTTATATTTCAC

TCGTGTTATTATTCATTTATTAAAAGCAACACTTCCATACAAATATATTTGGTTAGGTGA

ATTCTTTTCATTAACTGCTTCTTTTGCTTTTTATTGTATTACTGGTTATCAATTCAGACC

AAGTTTAGATAATCCATACTTTTATTTACCAACNCAAGACGACGATCACGATTTAAATGA

ATTAAGAGCACAATTAGAAGCGAAGATGGTGG

 

622

 

AFA110P

 

 

>AFA110P.Seq

ACTGTTGGCCTACTGGNATATGAAAAAAATATATATTTAGAACAAACGATGAAAAGTAAT

ATAAATAAAATAGTTGTACTATTTTTCCTATTTCTTGGAATTATAAACGCATATAAACAT

CATTTAGAAGTTAATAATGATGATAGAAAATTATTTGCAATTGAAGGTTTTGGTTTTGGT

GATAAAGGTACATTCTCAATTAAAGTAACAAATTGGACTTTAAATAATGGAGATGGTAAA

AAAACCAAAGTAGATGATAAGGTAGCATTTTTTTTTACGTATAACAGATTCAGATGCAGC

AAGACATGTAGATGAATATAGTGTTACAAAATGTGATTTTGAAAGTGAGAGTCCAAGTCT

CTTATTTAGAGGTGATTCAAATGTTATTGATGATTCATTCTCACAACAATTTAAAATTTC

AGCTGAAAACGATTTACCAGGAAGGTTTTTATACATTATATTATAAAAATTGTAATCCTT

CACCTTCAAAAACAACTTTTAAATTAGTTTTAGAAGAATATAATATTGATTCAAAGGGAG

GTATTTCATGGCTCCCAATAGGTAATGCTCCATTACCAACACTTTATACATTTTTTTCAT

TATTATTATTTGCAACAGCATTAGTATGGGTTTTATTCTGCCTCAGAGGTGAGGGTAAAA

GAGTAAACTTACTTCACCATCTTTGTACAGCATATTTAGTCATTCAAGCTATTGAATTAT

TATTTGAAGCTATTGAACAACATTATATTAAATTAACAGGATCAGCAAATGGATGGAATG

TAGCATATTATATATTTGCATTTGCACAAGGTTCATTTTTCATTATTCTTTTAGCTATGA

TTGGATCAGGATGGTATTTTATTAAACCCTTCCTTTCAGATAAAGAGAAAAAG-------

---TCAGCAAATGGATGGAATGTAGCATATTATATATTTGCATTTGCACAAGGTTCATTT

TTCATTATTCTTTTAGCTATGATTGGATCAGGATGGTATTTTATTAAACCCTTCCTTTCA

GATAAAGAGAAAAAGATATTTATGATTGTCATTCCATTACAAATTTTAGATAATATTGCA

TTAATCGTTGTGGATGAAGAATCAAGAGGTGCTGCAAATTGGATTAGTTGGAGTAATATT

TTCATTTTCGTTGATTTAATTTGTTGTTTAGCTATAATTGTTCCAATCGTTTGGTCAATG

AATCATCTTAAAGATAGTGTTGATTCAAATAATGATAAAGTTGTTAAAAATATTCAAAAA

TTAAGATTATTTAGATCATTTTATTTGGTTGTAATTTGTTATTTATATTTCACTCGTGTT

ATTATTCATTTATTAAAAGCAACACTTCCATACAAATATATTTGGTTAGGTGAATTCTTT

TCATTAACTGCTTCTTTTGCTTTTTATTGTATTACTGGTTATCAATTCAGACCAAGTTTA

GATAATCCATACTTTTATTTACCAACNCAAGACGACGATCACGATTTAAATGAATTAAGA

GCACAATTAGAAGCGAAGATGGTGG

 

1515

 

AFA110E

 

 

>AFA110E.Seq

ACTGTTGGCCTACTGGNATATGAAAAAAATATATATTTAGAACAAACGATGAAAAGTAAT

ATAAATAAAATAGTTGTACTATTTTTCCTATTTCTTGGAATTATAAACGCATATAAACAT

CATTTAGAAGTTAATAATGATGATAGAAAATTATTTGCAATTGAAGGTTTTGGTTTTGGT

GATAAAGGTACATTCTCAATTAAAGTAACAAATTGGACTTTAAATAATGGAGATGGTAAA

AAAACCAAAGTAGATGATAAGGTAGCATTTTTTTTTACGTATAACAGATTCAGATGCAGC

AAGACATGTAGATGAATATAGTGTTACAAAATGTGATTTTGAAAGTGAGAGTCCAAGTCT

CTTATTTAGAGGTGATTCAAATGTTATTGATGATTCATTCTCACAACAATTTAAAATTTC

AGCTGAAAACGATTTACCAGGAAGGTTTTTATACATTATATTATAAAAATTGTAATCCTT

CACCTTCAAAAACAACTTTTAAATTAGTTTTAGAAGAATATAATATTGATTCAAAGGGAG

GTATTTCATGGCTCCCAATAGGTAATGCTCCATTACCAACACTTTATACATTTTTTTCAT

TATTATTATTTGCAACAGCATTAGTATGGGTTTTATTCTGCCTCAGAGGTGAGGGTAAAA

GAGTAAACTTACTTCACCATCTTTGTACAGCATATTTAGTCATTCAAGCTATTGAATTAT

TATTTGAAGCTATTGAACAACATTATATTAAATTAACAGGATCAGCAAATGGATGGAATG

TAGCATATTATATATTTGCATTTGCACAAGGTTCATTTTTCATTATTCTTTTAGCTATGA

TTGGATCAGGATGGTATTTTATTAAACCCTTCCTTTCAGATAAAGAGAAAAAGATATTTA

TGATTGTCATTCCATTACAAATTTTAGATAATATTGCATTAATCGTTGTGGATGAAGAAT

CAAGAGGTGCTGCAAATTGGATTAGTTGGAGTAATATTTTCATTTTCGTTGATTTAATTT

GTTGTTTAGCTATAATTGTTCCAATCGTTTGGTCAATGAATCATCTTAAAGATAGTGTTG

ATTCAAATAATGATAAAGTTGTTAAAAATATTCAAAAATTAAGATTATTTAGATCATTTT

ATTTGGTTGTAATTTGTTATTTATATTTCACTCGTGTTATTATTCATTTATTAAAAGCAA

CACTTCCATACAAATATATTTGGTTAGGTGAATTCTTTTCATTAACTGCTTCTTTTGCTT

TTTATTGTATTACTGGTTATCAATTCAGACCAAGTTTAGATAATCCATACTTTTATTTAC

CAACNCAAGACGACGATCACGATTTAAATGAATTAAGAGCACAATTAGAAGCGAAGATGG

TGG

 

1383

 

AF
(Link to library)

AFA111
(Link to dictyBase)

 -

G21505

DDB0201556

Contig-U02322-1

AFA111Z
(Link to Original site)

-

-

AFA111Z

645

-

-

-

-
Show
AFA111

AF
(Link to library)

 

AFA111
(Link to dictyBase)

 

-  

G21505

 

DDB0201556

 

Contig-U02322-1

 

http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFA1-A/AFA111Q.Seq.d/

 

AFA111Z
(Link to Original site)

 

 

>AFA111 (AFA111Q) /CSM/AF/AFA1-A/AFA111Q.Seq.d/

XXXXXXXXXXAAATACACGAACATCCAGTCACAGGTGTTTACGTCGCCGGTTTAAAAGAA

GAGATCGTTTTATCGGTTGAACATGTACTCTCATTAATATCAGCAGGTGAAGCACATAGA

CATGTCGGTAGTACATCATACAATTTACAATCATCACGTAGTCATACCATTTTCAAAATG

ATCATTGAAAGTAAAGAGGTTTTACCAGAGGGGAGTGGTAGTGGTGGTCTAGAATCACCC

GTTAGATATAGTACATTGAATTTAATAGATTTAGCAGGTTCAGAGAAAGCATCAGAGTCA

ACAATTAGCGCAATTAGAAATAAAGAAGGTTCATATATTAATAAATCATTATTGACACTT

GGTACTGTGATTTCAAAGTTATCAGAGAAAGATACTGGTTATATACCGTATCGTGATTCT

AAATTAACTAGAGTCTTGCAAAATTCATTAAGTGGTAATTCTAGAGTTGCAATCATATGT

ACGATCACATTAGCATCAAACAATTTCGAAGAGTCTCACAATACATTAAAATTTGCAAGT

AGAGCTAAAAAGATATCAAACAATGCCAAGGTTAATGAAATTNCTTGATGATAAAGCATT

ATTAAAGACAATATAGAAATGAAATTGCTGAATTAAAACAANATTTACAGATGCA

 

2001. 6. 1

 

 

---IHEHPVTGVYVAGLKEEIVLSVEHVLSLISAGEAHRHVGSTSYNLQSSRSHTIFKMI

IESKEVLPEGSGSGGLESPVRYSTLNLIDLAGSEKASESTISAIRNKEGSYINKSLLTLG

TVISKLSEKDTGYIPYRDSKLTRVLQNSLSGNSRVAIICTITLASNNFEESHNTLKFASR

AKKISNNAKVNEIX***siikdniemklln*nxiyrc

 

 

Frame A:

---ntrtsshrclrrrfkrrdrfig*tctlinisr*st*tcr*yiiqftiit*syhfqnd

h*k*rgftrgew*wwsritr*i*yiefnrfsrfresirvnn*rn*k*rrfiy**iiidtw

ycdfkvirerywlytvs*f*in*slakfikw*f*scnhmydhisikqfrrvsqyikick*

s*kdikqcqg**nxlmikhy*rqyrneiaelkqxlqm



Frame B:

---IHEHPVTGVYVAGLKEEIVLSVEHVLSLISAGEAHRHVGSTSYNLQSSRSHTIFKMI

IESKEVLPEGSGSGGLESPVRYSTLNLIDLAGSEKASESTISAIRNKEGSYINKSLLTLG

TVISKLSEKDTGYIPYRDSKLTRVLQNSLSGNSRVAIICTITLASNNFEESHNTLKFASR

AKKISNNAKVNEIX***siikdniemklln*nxiyrc



Frame C:

---ytniqsqvftspv*kkrsfyrlnmysh*yqqvkhidmsvvhhtiynhhvvipfsk*s

lkvkrfyqrgvvvvv*nhpldivh*i**i*qvqrkhqsqqlaqleikkvhilinhy*hlv

l*fqsyqrkilviyriviln*lesckih*vvilelqsyvrsh*hqtisksltih*nlqve

lkryqtmprlmkxlddkallkti*k*nc*iktxftda

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



AFA111 (AFA111Q) /CSM/AF/AFA1-A/AFA111Q.Seq.d/                       1267   0.0

AFK347 (AFK347Q) /CSM/AF/AFK3-B/AFK347Q.Seq.d/                         48   2e-04

VHO657 (VHO657Q) /CSM/VH/VHO6-C/VHO657Q.Seq.d/                         36   0.65

SSG324 (SSG324Q) /CSM/SS/SSG3-A/SSG324Q.Seq.d/                         36   0.65

SSE467 (SSE467Q) /CSM/SS/SSE4-C/SSE467Q.Seq.d/                         36   0.65

FC-AB24 (FC-AB24Q) /CSM/FC/FC-AB/FC-AB24Q.Seq.d/                       36   0.65

CHP827 (CHP827Q) /CSM/CH/CHP8-B/CHP827Q.Seq.d/                         36   0.65

VHO552 (VHO552Q) /CSM/VH/VHO5-C/VHO552Q.Seq.d/                         34   2.6

VHM109 (VHM109Q) /CSM/VH/VHM1-A/VHM109Q.Seq.d/                         34   2.6

VHK350 (VHK350Q) /CSM/VH/VHK3-C/VHK350Q.Seq.d/                         34   2.6

 

2004.12.25

 

 


                                                               Score     E

Sequences producing significant alignments:                    (bits)  Value  N



BE040084|BE040084.1 OD104B08 OD Oryza sativa cDNA 5' similar to kinesin like protein, mRNA sequence.    40  3e-05  3

AL033502|AL033502.1 C.albicans cosmid Ca38F10.                    50  0.008  2

BF588042|BF588042.1 FM1_37_A06.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum cDNA, mRNA sequence.    36  0.023  2

AC101851|AC101851.6 Mus musculus clone RP23-276E14, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    42  0.030  2

BQ864090|BQ864090.1 QGC25L24.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC25L24, mRNA sequence.    50  0.034  1

BQ999076|BQ999076.1 QGG21A17.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGG21A17, mRNA sequence.    50  0.034  1

AZ522361|AZ522361.1 205PbG11 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    50  0.034  1

AL831771|AL831771.4 Mouse DNA sequence from clone RP23-336F13 on chromosome X.    48  0.14  1

AC008209|AC008209.5 Drosophila melanogaster, chromosome 3R, region 96F-96F, BAC clone BACR06K17, complete sequence.    38  0.38  2

AC012323|AC012323.7 Homo sapiens chromosome 16 clone RP11-89O14, complete sequence.    36  0.41  4

 

2003. 7.22

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



AY484464_1(AY484464|pid:none) Dictyostelium discoideum kinesin f...   328   1e-89

AC174297_6(AC174297|pid:none) Medicago truncatula clone mth2-73p...   204   2e-51

AP004853_16(AP004853|pid:none) Oryza sativa Japonica Group genom...   204   2e-51

AC006841_13(AC006841|pid:none) Arabidopsis thaliana chromosome 2...   203   4e-51

AC068924_30(AC068924|pid:none) Oryza sativa chromosome 10 BAC OS...   202   9e-51

AB062739_1(AB062739|pid:none) Arabidopsis thaliana MKRP2 mRNA fo...   201   1e-50

AY091060_1(AY091060|pid:none) Arabidopsis thaliana putative kine...   201   1e-50

CR855188_3(CR855188|pid:none) Oryza sativa genomic DNA, chromoso...   199   4e-50

AL606626_16(AL606626|pid:none) Oryza sativa genomic DNA, chromos...   199   4e-50

AP002040_15(AP002040|pid:none) Arabidopsis thaliana genomic DNA,...   195   1e-48

 

2009. 3.25

 

 


 psg: 0.75  gvh: 0.60  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00

 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00

 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00

 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00

 m3a: 0.00  m3b: 0.00  m_ : 1.00 



	 52.0 %: cytoplasmic

	 32.0 %: nuclear

	  8.0 %: mitochondrial

	  4.0 %: cytoskeletal

	  4.0 %: Golgi



>> prediction for AFA111 is cyt

 

-

 

 

-

 

-

 

AFA111Z

 

 

>AFA111Z.Seq

----------AAATACACGAACATCCAGTCACAGGTGTTTACGTCGCCGGTTTAAAAGAA

GAGATCGTTTTATCGGTTGAACATGTACTCTCATTAATATCAGCAGGTGAAGCACATAGA

CATGTCGGTAGTACATCATACAATTTACAATCATCACGTAGTCATACCATTTTCAAAATG

ATCATTGAAAGTAAAGAGGTTTTACCAGAGGGGAGTGGTAGTGGTGGTCTAGAATCACCC

GTTAGATATAGTACATTGAATTTAATAGATTTAGCAGGTTCAGAGAAAGCATCAGAGTCA

ACAATTAGCGCAATTAGAAATAAAGAAGGTTCATATATTAATAAATCATTATTGACACTT

GGTACTGTGATTTCAAAGTTATCAGAGAAAGATACTGGTTATATACCGTATCGTGATTCT

AAATTAACTAGAGTCTTGCAAAATTCATTAAGTGGTAATTCTAGAGTTGCAATCATATGT

ACGATCACATTAGCATCAAACAATTTCGAAGAGTCTCACAATACATTAAAATTTGCAAGT

AGAGCTAAAAAGATATCAAACAATGCCAAGGTTAATGAAATTNCTTGATGATAAAGCATT

ATTAAAGACAATATAGAAATGAAATTGCTGAATTAAAACAANATTTACAGATGCA

 

645

 

-

 

 

-

 

-

 

-

 

 

-

 

-

 

AF
(Link to library)

AFA112
(Link to dictyBase)

 - - -

-

AFA112P
(Link to Original site)

AFA112F

548

AFA112Z

551

AFA112P

1099

-

-
Show
AFA112

AF
(Link to library)

 

AFA112
(Link to dictyBase)

 

-  

-  

-  

-

 

http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFA1-A/AFA112Q.Seq.d/

 

AFA112P
(Link to Original site)

 

 

>AFA112 (AFA112Q) /CSM/AF/AFA1-A/AFA112Q.Seq.d/

ACTGTTGGCCTACTGGNAATTTCTCCAATCATCATATTTATAATTATATCTTTTTTGTTT

AATAAAAAAGAAAGAATACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTG

TTTTCAATTTTGCATTATCAACAGTTCATTTCAAAGTATACCTTTGATAACGATTGGGAA

TCAAGATGGGTTGTTAGTGATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCAT

ACTGCAGGTAAATGGTTTGGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCT

CGTTTCTACGCTGTATCAGCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTT

CTCCAATACACTGTAAAGAATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTA

TTACCATCCAAATTAGATCAATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTT

GGTCCAGATGTTTGTGGTGCCTCAAAGAGAGTTCACGTCATTCTCAACTACAAAGGAAAG

AACCATTTXXXXXXXXXXTTAAACCAGCCGGTCATGNCGATATCCCAGCTTCAATCGNTG

ATCCAGAAGCTGTCAAACCAGAGGATTGGAATGAAGAAGACGACGGTGAATGGGAAGCCC

CAACCATCGCCAATCCAGAATACAAAGGTGAATGGAAAGCAAAGAAAATCCCAAATCCAG

AATACAAAGGTGAATGGGNACACCCATTAATTGATAACCCAGAATACGCTGAAGACAATG

AACTCTACCTCTTTAATGATCTCGGTGCTATCGGTTTCGAATTATGGCAAGTTAAATCTG

GTTCCATCTTTAACAATATGATCGTCNCCGACTCTGTCGAAGAAGCTAAAGATTTCTCTG

AAAAGACCTTTGTTGCCAACCAAGAAGCCGAAAAGAAAATGTTTGACGACCTCGAAGCCG

CCAAAGCTGAAGAGAGAAAGAAAGCTGACGAAAAATTAGCNGCCGAAAAAGCTGCTGAAA

AAGAAGCCGAAGAAGCTGATGAAGAAGAAGAAGAAGTCGCTGAAGAAGATTTAGTTAAAA

CTGATGACAAAAAGAAGAAGGCAAAAAAT

 

2001. 6. 1

 

 

tvgllxispiiifiiisflfnkkeript*dfycv*fs*FLFSILHYQQFISKYTFDNDWE

SRWVVSDWHKEDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLV

LQYTVKNEQKVDCGGSYIKLLPSKLDQSAFDGESEYSIMFGPDVCGASKRVHVILNYKGK

NH---



---KPAGHXDIPASIXDPEAVKPEDWNEEDDGEWEAPTIANPEYKGEWKAKKIPNPEYKG

EWXHPLIDNPEYAEDNELYLFNDLGAIGFELWQVKSGSIFNNMIVXDSVEEAKDFSEKTF

VANQEAEKKMFDDLEAAKAEERKKADEKLAAEKAAEKEAEEADEEEEEVAEEDLVKTDDK

KKKAKN

 

 

Frame A:

tvgllxispiiifiiisflfnkkeript*dfycv*fs*FLFSILHYQQFISKYTFDNDWE

SRWVVSDWHKEDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLV

LQYTVKNEQKVDCGGSYIKLLPSKLDQSAFDGESEYSIMFGPDVCGASKRVHVILNYKGK

NH---



---lnqpvmxisqlqsxiqklsnqrigmkkttvngkpqpspiqntkvngkqrksqiqntk

vngxth*litqntlktmnstslmisvlsvsnygklnlvpslti*ssptlskklkislkrp

llptkkpkrkclttskppklkrerkltkn*xpkkllkkkpkklmkkkkkslkki*lklmt

krrrqk



Frame B:

llaywxflqssyl*lylfclikkkeyqhetfivfnflsfcfqfciinssfqsiplitign

qdgllvigikkmvnqvn*filqvnglvmkikkvfklvkmlvstlyqlnsqvsvtkvki*f

sntl*rmnkklivvvhtssyyhpn*inqhsmvnlniplclvqmfvvpqreftsfsttker

ti---



---*tsrsxrypsfnr*srscqtrgle*rrrr*mgspnhrqsriqr*meskenpksriqr

*mgtpin**prir*rq*tlpl**srcyrfrimas*iwfhl*qydrxrlcrrs*rfl*kdl

ccqprsrkenv*rprsrqs*rekes*rkisxrksc*krsrrs**rrrrsr*rrfs*n**q

keegkk



Frame C:

cwptgnfsnhhiynyiffv**krkntnmrlllcliflvfvfnfalstvhfkvyl**rlgi

kmgc**la*rrw*ir*issycr*mvw**kskrysn**rcsflrcis*ipkfq*qr*rfss

pihcke*tks*lwwfihqvitiqirsisirw*i*ifhyvwsrclwclkessrhsqlqrke

pf---



---KPAGHXDIPASIXDPEAVKPEDWNEEDDGEWEAPTIANPEYKGEWKAKKIPNPEYKG

EWXHPLIDNPEYAEDNELYLFNDLGAIGFELWQVKSGSIFNNMIVXDSVEEAKDFSEKTF

VANQEAEKKMFDDLEAAKAEERKKADEKLAAEKAAEKEAEEADEEEEEVAEEDLVKTDDK

KKKAKN

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



AFA112 (AFA112Q) /CSM/AF/AFA1-A/AFA112Q.Seq.d/                       1816   0.0

AFH646 (AFH646Q) /CSM/AF/AFH6-B/AFH646Q.Seq.d/                       1065   0.0

VFL283 (VFL283Q) /CSM/VF/VFL2-D/VFL283Q.Seq.d/                       1055   0.0

VFL214 (VFL214Q) /CSM/VF/VFL2-A/VFL214Q.Seq.d/                       1055   0.0

AFI321 (AFI321Q) /CSM/AF/AFI3-A/AFI321Q.Seq.d/                       1055   0.0

AFK274 (AFK274Q) /CSM/AF/AFK2-D/AFK274Q.Seq.d/                       1041   0.0

AFK242 (AFK242Q) /CSM/AF/AFK2-B/AFK242Q.Seq.d/                       1041   0.0

SFH596 (SFH596Q) /CSM/SF/SFH5-D/SFH596Q.Seq.d/                       1039   0.0

VFN642 (VFN642Q) /CSM/VF/VFN6-B/VFN642Q.Seq.d/                       1037   0.0

VFM435 (VFM435Q) /CSM/VF/VFM4-B/VFM435Q.Seq.d/                       1037   0.0

 

2004.12.25

 

 


                                                               Score     E

Sequences producing significant alignments:                    (bits)  Value  N



U36937|U36937.1 Dictyostelium discoideum calreticulin mRNA, complete cds.   775  0.0  5

BD248385|BD248385.1 Gene participating in tolerance against environmental stress.    92  1e-20  2

BH160872|BH160872.1 ENTRI18TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    74  5e-16  3

BI921109|BI921109.1 EST541012 tomato callus Lycopersicon esculentum cDNA clone cLEC72A21 5' end, mRNA sequence.    74  6e-11  2

AZ543757|AZ543757.1 ENTGD24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    74  3e-10  2

AW649196|AW649196.1 EST327650 tomato germinating seedlings, TAMU Lycopersicon esculentum cDNA clone cLEI7M10 5', mRNA sequence.    74  4e-09  1

AW626316|AW626316.1 EST320223 tomato radicle, 5 d post-imbibition, Cornell University Lycopersicon esculentum cDNA clone cLEZ19K24 5', mRNA sequence.    74  4e-09  1

BE459798|BE459798.1 EST415090 tomato developing/immature green fruit Lycopersicon esculentum cDNA clone cLEM8G13, mRNA sequence.    74  4e-09  1

AI771812|AI771812.1 EST252912 tomato ovary, TAMU Lycopersicon esculentum cDNA clone cLED38E1, mRNA sequence.    74  4e-09  1

BE435540|BE435540.1 EST406618 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG27F24, mRNA sequence.    74  4e-09  1

 

2003. 7.22

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



U36937_1(U36937|pid:none) Dictyostelium discoideum calreticulin ...   276   7e-73

AC133339_28(AC133339|pid:none) Oryza sativa chromosome 3 BAC OSJ...   182   1e-44

EF085019_1(EF085019|pid:none) Picea sitchensis clone WS0297_I16 ...   182   2e-44

AF283816_1(AF283816|pid:none) Pinus taeda calreticulin mRNA, com...   180   7e-44

U66344_1(U66344|pid:none) Arabidopsis thaliana calreticulin (Crt...   180   9e-44

U27698_1(U27698|pid:none) Arabidopsis thaliana calreticulin (AtC...   180   9e-44

EU984501_1(EU984501|pid:none) Nicotiana tabacum calreticulin mRN...   179   1e-43

EF084103_1(EF084103|pid:none) Picea sitchensis clone WS0274_F04 ...   179   1e-43

(Q40401) RecName: Full=Calreticulin; Flags: Precursor;  &T16968(...   179   2e-43

AY836753_1(AY836753|pid:none) Triticum aestivum calreticulin-lik...   177   6e-43

 

2009. 3.25

 

 


 psg: 0.89  gvh: 0.35  alm: 0.47  top: 0.40  tms: 0.00  mit: 0.29  mip: 0.10

 nuc: 0.10  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00

 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00

 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00

 m3a: 0.00  m3b: 0.00  m_ : 1.00 



	 48.0 %: nuclear

	 36.0 %: cytoplasmic

	  8.0 %: mitochondrial

	  4.0 %: vacuolar

	  4.0 %: peroxisomal



>> prediction for AFA112 is nuc

 

AFA112F

 

 

>AFA112F.Seq

ACTGTTGGCCTACTGGNAATTTCTCCAATCATCATATTTATAATTATATCTTTTTTGTTT

AATAAAAAAGAAAGAATACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTG

TTTTCAATTTTGCATTATCAACAGTTCATTTCAAAGTATACCTTTGATAACGATTGGGAA

TCAAGATGGGTTGTTAGTGATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCAT

ACTGCAGGTAAATGGTTTGGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCT

CGTTTCTACGCTGTATCAGCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTT

CTCCAATACACTGTAAAGAATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTA

TTACCATCCAAATTAGATCAATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTT

GGTCCAGATGTTTGTGGTGCCTCAAAGAGAGTTCACGTCATTCTCAACTACAAAGGAAAG

AACCATTT----------

 

548

 

AFA112Z

 

 

>AFA112Z.Seq

----------TTAAACCAGCCGGTCATGNCGATATCCCAGCTTCAATCGNTGATCCAGAA

GCTGTCAAACCAGAGGATTGGAATGAAGAAGACGACGGTGAATGGGAAGCCCCAACCATC

GCCAATCCAGAATACAAAGGTGAATGGAAAGCAAAGAAAATCCCAAATCCAGAATACAAA

GGTGAATGGGNACACCCATTAATTGATAACCCAGAATACGCTGAAGACAATGAACTCTAC

CTCTTTAATGATCTCGGTGCTATCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCCATC

TTTAACAATATGATCGTCNCCGACTCTGTCGAAGAAGCTAAAGATTTCTCTGAAAAGACC

TTTGTTGCCAACCAAGAAGCCGAAAAGAAAATGTTTGACGACCTCGAAGCCGCCAAAGCT

GAAGAGAGAAAGAAAGCTGACGAAAAATTAGCNGCCGAAAAAGCTGCTGAAAAAGAAGCC

GAAGAAGCTGATGAAGAAGAAGAAGAAGTCGCTGAAGAAGATTTAGTTAAAACTGATGAC

AAAAAGAAGAAGGCAAAAAAT

 

551

 

AFA112P

 

 

>AFA112P.Seq

ACTGTTGGCCTACTGGNAATTTCTCCAATCATCATATTTATAATTATATCTTTTTTGTTT

AATAAAAAAGAAAGAATACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTG

TTTTCAATTTTGCATTATCAACAGTTCATTTCAAAGTATACCTTTGATAACGATTGGGAA

TCAAGATGGGTTGTTAGTGATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCAT

ACTGCAGGTAAATGGTTTGGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCT

CGTTTCTACGCTGTATCAGCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTT

CTCCAATACACTGTAAAGAATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTA

TTACCATCCAAATTAGATCAATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTT

GGTCCAGATGTTTGTGGTGCCTCAAAGAGAGTTCACGTCATTCTCAACTACAAAGGAAAG

AACCATTT----------TTAAACCAGCCGGTCATGNCGATATCCCAGCTTCAATCGNTG

ATCCAGAAGCTGTCAAACCAGAGGATTGGAATGAAGAAGACGACGGTGAATGGGAAGCCC

CAACCATCGCCAATCCAGAATACAAAGGTGAATGGAAAGCAAAGAAAATCCCAAATCCAG

AATACAAAGGTGAATGGGNACACCCATTAATTGATAACCCAGAATACGCTGAAGACAATG

AACTCTACCTCTTTAATGATCTCGGTGCTATCGGTTTCGAATTATGGCAAGTTAAATCTG

GTTCCATCTTTAACAATATGATCGTCNCCGACTCTGTCGAAGAAGCTAAAGATTTCTCTG

AAAAGACCTTTGTTGCCAACCAAGAAGCCGAAAAGAAAATGTTTGACGACCTCGAAGCCG

CCAAAGCTGAAGAGAGAAAGAAAGCTGACGAAAAATTAGCNGCCGAAAAAGCTGCTGAAA

AAGAAGCCGAAGAAGCTGATGAAGAAGAAGAAGAAGTCGCTGAAGAAGATTTAGTTAAAA

CTGATGACAAAAAGAAGAAGGCAAAAAAT

 

1099

 

-

 

 

-

 

-

 

AF
(Link to library)

AFA115
(Link to dictyBase)

 - - -

Contig-U16353-1

AFA115Z
(Link to Original site)

-

-

AFA115Z

405

-

-

-

-
Show
AFA115

AF
(Link to library)

 

AFA115
(Link to dictyBase)

 

-  

-  

-  

Contig-U16353-1

 

http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFA1-A/AFA115Q.Seq.d/

 

AFA115Z
(Link to Original site)

 

 

>AFA115 (AFA115Q) /CSM/AF/AFA1-A/AFA115Q.Seq.d/

XXXXXXXXXXGAAAATCGACGCATGTTATACCGGCACTCAAAAATGCTTGAGTGGTCCAC

CAGGCATTTCACCACTTACATTCAGTAATGCAGCTTGTCACAAGATTTGCCACTAGAAAA

ACACCCGTTGCCAACTGGTATTTGGATTGCAATTTATTGGGTGGTTATTGGTGTCCAGAA

TTCAATTTAGCAGATGGCACAATCGCCAAAGAGGAGAAATCAACAATACCCAAAAGATAC

CATCACACAACTCCTGCAAATTTATTGTACTCGTTGAGAGAGGCATTGGTTTTATTGGTG

GAGGAGGGTCTTGACAATGTATGGAAACGTCATCAAGACGCTGCCATATTGTTGTATGCC

GGTTTGGAAAGCTTAGGTTTGAAACCATTTGTTCCACAATTAAATGAAGCACCAG

 

2001. 6. 1

 

 

---ksthvipalkna*VVHQAFHHLHSVMQLVTRFATRKTPVANWYLDCNLLGGYWCPEF

NLADGTIAKEEKSTIPKRYHHTTPANLLYSLREALVLLVEEGLDNVWKRHQDAAILLYAG

LESLGLKPFVPQLNEAP

 

 

Frame A:

---kidacytgtqkclsgppgispltfsnaachkich*kntrcqlvfglqfigwllvsri

qfsrwhnrqrgeinntqkipshnsckfivlvergigfiggggs*qcmetssrrchivvcr

fgklrfeticstik*st



Frame B:

---ksthvipalkna*VVHQAFHHLHSVMQLVTRFATRKTPVANWYLDCNLLGGYWCPEF

NLADGTIAKEEKSTIPKRYHHTTPANLLYSLREALVLLVEEGLDNVWKRHQDAAILLYAG

LESLGLKPFVPQLNEAP



Frame C:

---nrrmlyrhskmlewstrhfttyiq*cslsqdlplekhplptgiwiaiywvvigvqns

i*qmaqspkrrnqqypkdtitqllqiyctr*erhwfywwrrvltmygnviktlpyccmpv

wka*v*nhlfhn*mkhq

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



AFA115 (AFA115Q) /CSM/AF/AFA1-A/AFA115Q.Seq.d/                        803   0.0

VSG442 (VSG442Q) /CSM/VS/VSG4-B/VSG442Q.Seq.d/                        787   0.0

VFO737 (VFO737Q) /CSM/VF/VFO7-B/VFO737Q.Seq.d/                        787   0.0

SSK266 (SSK266Q) /CSM/SS/SSK2-C/SSK266Q.Seq.d/                        787   0.0

SSG734 (SSG734Q) /CSM/SS/SSG7-B/SSG734Q.Seq.d/                        787   0.0

CFI143 (CFI143Q) /CSM/CF/CFI1-B/CFI143Q.Seq.d/                        787   0.0

AFL319 (AFL319Q) /CSM/AF/AFL3-A/AFL319Q.Seq.d/                        787   0.0

VFF323 (VFF323Q) /CSM/VF/VFF3-A/VFF323Q.Seq.d/                        783   0.0

AFO677 (AFO677Q) /CSM/AF/AFO6-D/AFO677Q.Seq.d/                        783   0.0

CFE108 (CFE108Q) /CSM/CF/CFE1-A/CFE108Q.Seq.d/                        781   0.0

 

2004.12.25

 

 


                                                               Score     E

Sequences producing significant alignments:                    (bits)  Value  N



AC132316|AC132316.2 Mus musculus chromosome UNK clone RP24-236C17, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  1.3  1

BU879886|BU879886.1 UM38TG06 Populus flower cDNA library Populus balsamifera subsp. trichocarpa cDNA 5 prime, mRNA sequence.    42  5.2  1

BZ023300|BZ023300.1 oeh63g07.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    42  5.2  1

BE571784|BE571784.1 601333769F1 NCI_CGAP_Mam6 Mus musculus cDNA clone IMAGE:3711088 5', mRNA sequence.    42  5.2  1

AC127587|AC127587.4 Mus musculus chromosome 7 clone RP24-143O1, complete sequence.    44     22  2

AE017038|AE017038.1 Bacillus anthracis str. Ames section 15 of 18 of the complete genome.    42    252  3

 

2003. 7.22

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



(Q54GT6) RecName: Full=Serine--pyruvate aminotransferase;       ...   216   6e-71

CP000469_358(CP000469|pid:none) Shewanella sp. ANA-3, complete g...    94   2e-24

CP000446_364(CP000446|pid:none) Shewanella sp. MR-4, complete ge...    93   3e-24

AE014299_4224(AE014299|pid:none) Shewanella oneidensis MR-1, com...    90   5e-24

CP000606_293(CP000606|pid:none) Shewanella loihica PV-4, complet...    87   4e-23

CP000806_2867(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    96   5e-23

CP001287_3638(CP001287|pid:none) Cyanothece sp. PCC 8801, comple...    96   2e-22

CP000891_4102(CP000891|pid:none) Shewanella baltica OS195, compl...    83   3e-22

CP000507_3267(CP000507|pid:none) Shewanella amazonensis SB2B, co...    86   3e-22

CP000503_3702(CP000503|pid:none) Shewanella sp. W3-18-1, complet...    84   3e-22

 

2009. 3.25

 

 


 psg: 0.83  gvh: 0.45  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.05

 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00

 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00

 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00

 m3a: 0.00  m3b: 0.00  m_ : 1.00 



	 44.0 %: mitochondrial

	 40.0 %: nuclear

	 12.0 %: cytoplasmic

	  4.0 %: cytoskeletal



>> prediction for AFA115 is mit

 

-

 

 

-

 

-

 

AFA115Z

 

 

>AFA115Z.Seq

----------GAAAATCGACGCATGTTATACCGGCACTCAAAAATGCTTGAGTGGTCCAC

CAGGCATTTCACCACTTACATTCAGTAATGCAGCTTGTCACAAGATTTGCCACTAGAAAA

ACACCCGTTGCCAACTGGTATTTGGATTGCAATTTATTGGGTGGTTATTGGTGTCCAGAA

TTCAATTTAGCAGATGGCACAATCGCCAAAGAGGAGAAATCAACAATACCCAAAAGATAC

CATCACACAACTCCTGCAAATTTATTGTACTCGTTGAGAGAGGCATTGGTTTTATTGGTG

GAGGAGGGTCTTGACAATGTATGGAAACGTCATCAAGACGCTGCCATATTGTTGTATGCC

GGTTTGGAAAGCTTAGGTTTGAAACCATTTGTTCCACAATTAAATGAAGCACCAG

 

405

 

-

 

 

-

 

-

 

-

 

 

-

 

-

 

AF
(Link to library)

AFA116
(Link to dictyBase)

 -

G21506

DDB0220138

Contig-U08610-1

AFA116P
(Link to Original site)

AFA116F

385

AFA116Z

465

AFA116P

850

-

-
Show
AFA116

AF
(Link to library)

 

AFA116
(Link to dictyBase)

 

-  

G21506

 

DDB0220138

 

Contig-U08610-1

 

http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFA1-A/AFA116Q.Seq.d/

 

AFA116P
(Link to Original site)

 

 

>AFA116 (AFA116Q) /CSM/AF/AFA1-A/AFA116Q.Seq.d/

ACTGTTGGCCTACTGGCTTGAACAATTGATTATGTTTAATAATAATTTAAGTGATGTTCC

ATCATCAATTGAATTTTTAAAACATTTAACCATTTTAGATTTATCACATAATAATTTACA

TGAAATTTGTAGAGAATTAGGTAATCTAAGTTTTTTACGTGAATTATATTTATCAAATAA

TTCTTTAAAAAAGTTTCCAACAACTGGTAATCTTTATAATCTTAAAAAATTAATTTTAGA

TAATAATCAAATTACAACTATACCAATTGAATGTGTTGAACCATTAATACAATTACAAAC

TTTAGATTTATCATTTAATAAAATTGGTACAATTATATCAACAACAACAACAACAACAAC

AACAACAACCACCACCAATGGTAAAXXXXXXXXXXAATTAAAATTGCTGATTTTGGTTTA

GCTTCTTTTGCAAAGAAAAGTTTAACAACAAATAATCAATAATAATAATAATACTAATAA

TACTGCTACTAGTTCCACTACTACTTCTTCCGCCAATGGCGCAAATAGTATTTCCAACAA

CAACAACAATGGTACAACTTCAGTCGATCAATCAAGATTAGCTTATGCTTTTTATGCTGC

ACCAGAAATTTTAAATTCAAAACATTTCTCTGAAAAATCAGATGTTTTCTCTTTTGGTAC

TATCTTATGGGAATTAGTTACAAATAAAATACCTTTTGATGGAATGGATCCATATGAAGT

TAAAGAATTATTAAAATCTGGCAAAAGATTGGAAATACCTGAAAATTGTAATGAAGTTTT

AAAAAATATAATTCAAGATTGTTGGAATCAACAATNCTGAAGATAGACCAACTTTTTAAG

TATTTATCATCGTTTGGAAA

 

2001. 6. 1

 

 

LLAYWLEQLIMFNNNLSDVPSSIEFLKHLTILDLSHNNLHEICRELGNLSFLRELYLSNN

SLKKFPTTGNLYNLKKLILDNNQITTIPIECVEPLIQLQTLDLSFNKIGTIISTTTTTTT

TTTTTNGK---



---IKIADFGLASFAKKSLTTNNQ****y**ycy*fhyyffrqwrk*yfqqqqqwynfsr

sikislcflcctrnfkfktfl*kircflfwyylmgisyk*ntf*wngsi*s*riikiwqk

ignt*kl**sfkkynsrllestxlkidqlfkylssfg

 

 

Frame A:

tvglla*tidyv***fk*csiin*ifktfnhfrfit**ft*nl*rir*skfft*iifik*

ffkkvsnnw*sl*s*kinfr**snynytn*mc*tintitnfrfii**nwynyinnnnnnn

nnnhhqw*---



---n*nc*fwfsffckekfnnk*siiiiiliilllvpllllppmaqivfpttttmvqlqs

inqd*lmlfmlhqkf*iqnislknqmfsllvlsygn*lqikyllmewihmklkny*nlak

dwkylkivmkf*ki*fkivginnxedrptf*vfiivwk



Frame B:

LLAYWLEQLIMFNNNLSDVPSSIEFLKHLTILDLSHNNLHEICRELGNLSFLRELYLSNN

SLKKFPTTGNLYNLKKLILDNNQITTIPIECVEPLIQLQTLDLSFNKIGTIISTTTTTTT

TTTTTNGK---



---IKIADFGLASFAKKSLTTNNQ****y**ycy*fhyyffrqwrk*yfqqqqqwynfsr

sikislcflcctrnfkfktfl*kircflfwyylmgisyk*ntf*wngsi*s*riikiwqk

ignt*kl**sfkkynsrllestxlkidqlfkylssfg



Frame C:

cwptglnn*lcliii*vmfhhqlnf*ni*pf*iyhiiiymkfven*vi*vfyvnyiyqii

l*ksfqqlvifiilkn*f*iiiklqlyqlnvlnh*ynykl*iyhliklvqlyqqqqqqqq

qqpppmv---



---lkllilv*lllqrkv*qqiinnnnntnntatsstttssangansisnnnnngttsvd

qsrlayafyaapeilnskhfseksdvfsfgtilwelvtnkipfdgmdpyevkellksgkr

leipencnevlkniiqdcwnqqx*r*tnflsiyhrle

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



AFA116 (AFA116Q) /CSM/AF/AFA1-A/AFA116Q.Seq.d/                        743   0.0

SSI275 (SSI275Q) /CSM/SS/SSI2-D/SSI275Q.Seq.d/                         46   9e-04

AFJ254 (AFJ254Q) /CSM/AF/AFJ2-C/AFJ254Q.Seq.d/                         46   9e-04

CHO393 (CHO393Q) /CSM/CH/CHO3-D/CHO393Q.Seq.d/                         44   0.004

VHL639 (VHL639Q) /CSM/VH/VHL6-B/VHL639Q.Seq.d/                         42   0.014

VHK326 (VHK326Q) /CSM/VH/VHK3-B/VHK326Q.Seq.d/                         42   0.014

CHP750 (CHP750Q) /CSM/CH/CHP7-C/CHP750Q.Seq.d/                         42   0.014

CHL590 (CHL590Q) /CSM/CH/CHL5-D/CHL590Q.Seq.d/                         42   0.014

CHL245 (CHL245Q) /CSM/CH/CHL2-B/CHL245Q.Seq.d/                         42   0.014

CHI232 (CHI232Q) /CSM/CH/CHI2-B/CHI232Q.Seq.d/                         42   0.014

 

2004.12.25

 

 


                                                               Score     E

Sequences producing significant alignments:                    (bits)  Value  N



AJ010592|AJ010592.2 Guillardia theta DNA for complete sequence of nucleomorph chromosome 2.    36  5e-05  13

AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          38  2e-04  12

AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.    32  4e-04  8

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    48  5e-04  4

AC116963|AC116963.1 Dictyostelium discoideum chromosome 2 map 4790445-4846595 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    32  0.001  9

AE014017|AE014017.1 Buchnera aphidicola str. Bp (Baizongia pistaciae), section 2 of 2 of the complete genome.    34  0.001  14

AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence.    38  0.002  13

AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    36  0.003  11

AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    40  0.003  11

AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence.    34  0.004  7

 

2003. 7.22

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



(Q54XZ5) RecName: Full=Probable serine/threonine-protein kinase ...   214   4e-54

AP004654_19(AP004654|pid:none) Oryza sativa Japonica Group genom...    80   1e-13

AE016823_805(AE016823|pid:none) Leptospira interrogans serovar C...    79   2e-13

CP000117_1490(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    77   5e-13

BT055249_1(BT055249|pid:none) Zea mays full-length cDNA clone ZM...    76   2e-12

AC124968_9(AC124968|pid:none) Medicago truncatula clone mth2-15e...    76   2e-12

AE016823_807(AE016823|pid:none) Leptospira interrogans serovar C...    75   2e-12

FB811767_1(FB811767|pid:none) Sequence 31040 from Patent WO20080...    75   3e-12

EU973342_1(EU973342|pid:none) Zea mays clone 397050 serine/threo...    75   3e-12

BT055763_1(BT055763|pid:none) Zea mays full-length cDNA clone ZM...    75   3e-12

 

2009. 3.25

 

 


 psg: 0.75  gvh: 0.42  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00

 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00

 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00

 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00

 m3a: 0.00  m3b: 0.00  m_ : 1.00 



	 48.0 %: cytoplasmic

	 28.0 %: nuclear

	  8.0 %: cytoskeletal

	  8.0 %: mitochondrial

	  4.0 %: vacuolar

	  4.0 %: endoplasmic reticulum



>> prediction for AFA116 is cyt

 

AFA116F

 

 

>AFA116F.Seq

ACTGTTGGCCTACTGGCTTGAACAATTGATTATGTTTAATAATAATTTAAGTGATGTTCC

ATCATCAATTGAATTTTTAAAACATTTAACCATTTTAGATTTATCACATAATAATTTACA

TGAAATTTGTAGAGAATTAGGTAATCTAAGTTTTTTACGTGAATTATATTTATCAAATAA

TTCTTTAAAAAAGTTTCCAACAACTGGTAATCTTTATAATCTTAAAAAATTAATTTTAGA

TAATAATCAAATTACAACTATACCAATTGAATGTGTTGAACCATTAATACAATTACAAAC

TTTAGATTTATCATTTAATAAAATTGGTACAATTATATCAACAACAACAACAACAACAAC

AACAACAACCACCACCAATGGTAAA----------

 

385

 

AFA116Z

 

 

>AFA116Z.Seq

----------AATTAAAATTGCTGATTTTGGTTTAGCTTCTTTTGCAAAGAAAAGTTTAA

CAACAAATAATCAATAATAATAATAATACTAATAATACTGCTACTAGTTCCACTACTACT

TCTTCCGCCAATGGCGCAAATAGTATTTCCAACAACAACAACAATGGTACAACTTCAGTC

GATCAATCAAGATTAGCTTATGCTTTTTATGCTGCACCAGAAATTTTAAATTCAAAACAT

TTCTCTGAAAAATCAGATGTTTTCTCTTTTGGTACTATCTTATGGGAATTAGTTACAAAT

AAAATACCTTTTGATGGAATGGATCCATATGAAGTTAAAGAATTATTAAAATCTGGCAAA

AGATTGGAAATACCTGAAAATTGTAATGAAGTTTTAAAAAATATAATTCAAGATTGTTGG

AATCAACAATNCTGAAGATAGACCAACTTTTTAAGTATTTATCATCGTTTGGAAA

 

465

 

AFA116P

 

 

>AFA116P.Seq

ACTGTTGGCCTACTGGCTTGAACAATTGATTATGTTTAATAATAATTTAAGTGATGTTCC

ATCATCAATTGAATTTTTAAAACATTTAACCATTTTAGATTTATCACATAATAATTTACA

TGAAATTTGTAGAGAATTAGGTAATCTAAGTTTTTTACGTGAATTATATTTATCAAATAA

TTCTTTAAAAAAGTTTCCAACAACTGGTAATCTTTATAATCTTAAAAAATTAATTTTAGA

TAATAATCAAATTACAACTATACCAATTGAATGTGTTGAACCATTAATACAATTACAAAC

TTTAGATTTATCATTTAATAAAATTGGTACAATTATATCAACAACAACAACAACAACAAC

AACAACAACCACCACCAATGGTAAA----------AATTAAAATTGCTGATTTTGGTTTA

GCTTCTTTTGCAAAGAAAAGTTTAACAACAAATAATCAATAATAATAATAATACTAATAA

TACTGCTACTAGTTCCACTACTACTTCTTCCGCCAATGGCGCAAATAGTATTTCCAACAA

CAACAACAATGGTACAACTTCAGTCGATCAATCAAGATTAGCTTATGCTTTTTATGCTGC

ACCAGAAATTTTAAATTCAAAACATTTCTCTGAAAAATCAGATGTTTTCTCTTTTGGTAC

TATCTTATGGGAATTAGTTACAAATAAAATACCTTTTGATGGAATGGATCCATATGAAGT

TAAAGAATTATTAAAATCTGGCAAAAGATTGGAAATACCTGAAAATTGTAATGAAGTTTT

AAAAAATATAATTCAAGATTGTTGGAATCAACAATNCTGAAGATAGACCAACTTTTTAAG

TATTTATCATCGTTTGGAAA

 

850

 

-

 

 

-

 

-

 

AF
(Link to library)

AFA117
(Link to dictyBase)

 - - -

Contig-U16178-1

AFA117P
(Link to Original site)

AFA117F

163

AFA117Z

420

AFA117P

583

-

-
Show
AFA117

AF
(Link to library)

 

AFA117
(Link to dictyBase)

 

-  

-  

-  

Contig-U16178-1

 

http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFA1-A/AFA117Q.Seq.d/

 

AFA117P
(Link to Original site)

 

 

>AFA117 (AFA117Q) /CSM/AF/AFA1-A/AFA117Q.Seq.d/

ACTGTTGGCCTACTGGCCAAATTATAAACTATATAAGATTTGTGTGTTTGTTTTTTTTTT

ACTTAATCAATAAAAAATTAAAACAAATCAATTATAGNGTAAACCCTTGTAAAAATTAAA

TAAAAAACATTGTATTATATTCCACCTCATATTTTTTTTTTCCXXXXXXXXXXCTTTGCC

GTTGCAAACTTTTCAACCAATCCACCAACCATCGAAAAACTCAGAGTTCGTAATTTACCA

TTACGTGATCTCCTTTACATCACTGAAAACTCTATCGCCGGTGTTGGTTACGATTGTGCT

CCACTTTTAATCACTAATCAAAACGGTTGGAAATATTCTGGTGAAATGGATAAGGCCTCT

GAAGGTGGTGCTGCCGCTGGCTCTGAAACCTCTGCTCGTAAACTCTTCCAAAATAAAGTA

GACCTTGGTGAATCAAAATCTGCCGATAAAAAGTTAACAACCGTTCATCAAAATTGTATT

ACTTCAATCGTTCCATTCAAGAGTGTAGGTGGTGTCGTCTCTGATTTCAGTACCNCTGGT

TTAGATGGTAACATTGTCGTATGGCATGTAAAAGCNCTTGAAGCTAAAAATAA

 

2001. 6. 1

 

 

llaywpnyklykicvfvffllnq*kiktnql*xkpl*KLNKKHCIIFHLIFFFS---



---FAVANFSTNPPTIEKLRVRNLPLRDLLYITENSIAGVGYDCAPLLITNQNGWKYSGE

MDKASEGGAAAGSETSARKLFQNKVDLGESKSADKKLTTVHQNCITSIVPFKSVGGVVSD

FSTXGLDGNIVVWHVKALEAKN

 

 

Frame A:

tvgllakl*ti*dlcvcffft*sikn*nksiix*tlvkik*ktlyyipphifff---



---lcrcklfnqstnhrktqss*ftit*splhh*klyrrcwlrlcstfnh*skrleifw*

ng*gl*rwccrwl*nlcs*tlpk*srpw*ikicr*kvnnrssklyyfnrsiqecrwcrl*

fqyxwfrw*hcrmacksx*s*k*



Frame B:

llaywpnyklykicvfvffllnq*kiktnql*xkpl*KLNKKHCIIFHLIFFFS---



---FAVANFSTNPPTIEKLRVRNLPLRDLLYITENSIAGVGYDCAPLLITNQNGWKYSGE

MDKASEGGAAAGSETSARKLFQNKVDLGESKSADKKLTTVHQNCITSIVPFKSVGGVVSD

FSTXGLDGNIVVWHVKALEAKN



Frame C:

cwptgqiinyirfvclfffylinkklkqinyxvnpckn*iknivlystsyfff---



---lplqtfqpihqpsknsefviyhyvisftslktlspvlvtivlhf*sliktvgnilvk

wirplkvvlplalkpllvnsskik*tlvnqnlpiks*qpfikivllqsfhsrv*vvssli

svplv*mvtlsygm*kxlklki

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



VFI561 (VFI561Q) /CSM/VF/VFI5-C/VFI561Q.Seq.d/                        821   0.0

VFE696 (VFE696Q) /CSM/VF/VFE6-D/VFE696Q.Seq.d/                        821   0.0

VFE381 (VFE381Q) /CSM/VF/VFE3-D/VFE381Q.Seq.d/                        821   0.0

SLH610 (SLH610Q) /CSM/SL/SLH6-A/SLH610Q.Seq.d/                        821   0.0

SLC343 (SLC343Q) /CSM/SL/SLC3-B/SLC343Q.Seq.d/                        821   0.0

SFI444 (SFI444Q) /CSM/SF/SFI4-B/SFI444Q.Seq.d/                        821   0.0

FC-AL11 (FC-AL11Q) /CSM/FC/FC-AL/FC-AL11Q.Seq.d/                      821   0.0

FC-208 (FC-208Q) /CSM/CG/CG-FC/FC-208Q.Seq.d/                         821   0.0

AFM781 (AFM781Q) /CSM/AF/AFM7-D/AFM781Q.Seq.d/                        821   0.0

AFD360 (AFD360Q) /CSM/AF/AFD3-C/AFD360Q.Seq.d/                        821   0.0

 

2009. 4. 3

 

 


                                                               Score     E

Sequences producing significant alignments:                    (bits)  Value  N



AF095930|AF095930.1 Dictyostelium discoideum p41-Arc (arpD) mRNA, complete cds.   821  0.0  2

AC094767|AC094767.3 Rattus norvegicus clone CH230-5L7, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces.    50  0.21  2

AC124921|AC124921.3 Rattus norvegicus clone CH230-214L24, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    50  0.44  2

BD099247|BD099247.1 Novel genes cloned in humanneuroblastoma and fragments thereof.    34  1.5  2

BD019309|BD019309.1 Novel gene and novel gene fragment cloned in human neuroblastoma.    34  1.5  2

BD099265|BD099265.1 Novel genes cloned in humanneuroblastoma and fragments thereof.    44  1.9  1

BD019327|BD019327.1 Novel gene and novel gene fragment cloned in human neuroblastoma.    44  1.9  1

Z82216|Z82216.1 Human DNA sequence from PAC 75N13 on chromosome Xq21.1. Contains ZNF6 like gene, ESTs, STSs and CpG islands.    38  6.5  3

AK109422|AK109422.1 Oryza sativa (japonica cultivar-group) cDNA clone:006-305-E11, full insert sequence.    42  7.6  1

CB140336|CB140336.1 K-EST0193753 L15CKK1 Homo sapiens cDNA clone L15CKK1-7-D10 5', mRNA sequence.    42  7.6  1

 

2003. 7.22

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



AK073919_1(AK073919|pid:none) Oryza sativa Japonica Group cDNA c...    77   4e-13

AP007155_21(AP007155|pid:none) Aspergillus oryzae RIB40 genomic ...    75   1e-12

EU961854_1(EU961854|pid:none) Zea mays clone 238674 actin-relate...    73   6e-12

CU633438_777(CU633438|pid:none) Podospora anserina genomic DNA c...    69   9e-11

AJ720885_1(AJ720885|pid:none) Gallus gallus mRNA for hypothetica...    68   2e-10

(P78774) RecName: Full=Actin-related protein 2/3 complex subunit...    66   6e-10

EF678447_1(EF678447|pid:none) Picea sitchensis clone WS02921_O12...    64   3e-09

EF676961_1(EF676961|pid:none) Picea sitchensis clone WS02759_A13...    63   5e-09

BC073411_1(BC073411|pid:none) Xenopus laevis MGC80877 protein, m...    63   7e-09

A84719(A84719) probable ARP2/3 protein complex subunit p41 [impo...    62   1e-08

 

2009. 3.25

 

 


 psg: 0.99  gvh: 0.66  alm: 0.43  top: 0.23  tms: 0.00  mit: 0.36  mip: 0.00

 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00

 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00

 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00

 m3a: 0.00  m3b: 0.00  m_ : 1.00 



	 48.0 %: extracellular, including cell wall

	 12.0 %: cytoplasmic

	 12.0 %: vacuolar

	  8.0 %: mitochondrial

	  8.0 %: nuclear

	  8.0 %: endoplasmic reticulum

	  4.0 %: Golgi



>> prediction for AFA117 is exc

 

AFA117F

 

 

>AFA117F.Seq

ACTGTTGGCCTACTGGCCAAATTATAAACTATATAAGATTTGTGTGTTTGTTTTTTTTTT

ACTTAATCAATAAAAAATTAAAACAAATCAATTATAGNGTAAACCCTTGTAAAAATTAAA

TAAAAAACATTGTATTATATTCCACCTCATATTTTTTTTTTCC----------

 

163

 

AFA117Z

 

 

>AFA117Z.Seq

----------CTTTGCCGTTGCAAACTTTTCAACCAATCCACCAACCATCGAAAAACTCA

GAGTTCGTAATTTACCATTACGTGATCTCCTTTACATCACTGAAAACTCTATCGCCGGTG

TTGGTTACGATTGTGCTCCACTTTTAATCACTAATCAAAACGGTTGGAAATATTCTGGTG

AAATGGATAAGGCCTCTGAAGGTGGTGCTGCCGCTGGCTCTGAAACCTCTGCTCGTAAAC

TCTTCCAAAATAAAGTAGACCTTGGTGAATCAAAATCTGCCGATAAAAAGTTAACAACCG

TTCATCAAAATTGTATTACTTCAATCGTTCCATTCAAGAGTGTAGGTGGTGTCGTCTCTG

ATTTCAGTACCNCTGGTTTAGATGGTAACATTGTCGTATGGCATGTAAAAGCNCTTGAAG

CTAAAAATAA

 

420

 

AFA117P

 

 

>AFA117P.Seq

ACTGTTGGCCTACTGGCCAAATTATAAACTATATAAGATTTGTGTGTTTGTTTTTTTTTT

ACTTAATCAATAAAAAATTAAAACAAATCAATTATAGNGTAAACCCTTGTAAAAATTAAA

TAAAAAACATTGTATTATATTCCACCTCATATTTTTTTTTTCC----------CTTTGCC

GTTGCAAACTTTTCAACCAATCCACCAACCATCGAAAAACTCAGAGTTCGTAATTTACCA

TTACGTGATCTCCTTTACATCACTGAAAACTCTATCGCCGGTGTTGGTTACGATTGTGCT

CCACTTTTAATCACTAATCAAAACGGTTGGAAATATTCTGGTGAAATGGATAAGGCCTCT

GAAGGTGGTGCTGCCGCTGGCTCTGAAACCTCTGCTCGTAAACTCTTCCAAAATAAAGTA

GACCTTGGTGAATCAAAATCTGCCGATAAAAAGTTAACAACCGTTCATCAAAATTGTATT

ACTTCAATCGTTCCATTCAAGAGTGTAGGTGGTGTCGTCTCTGATTTCAGTACCNCTGGT

TTAGATGGTAACATTGTCGTATGGCATGTAAAAGCNCTTGAAGCTAAAAATAA

 

583

 

-

 

 

-

 

-

 

AF
(Link to library)

AFA118
(Link to dictyBase)

 - - -

-

AFA118P
(Link to Original site)

AFA118F

387

AFA118Z

555

AFA118P

942

-

-
Show
AFA118

AF
(Link to library)

 

AFA118
(Link to dictyBase)

 

-  

-  

-  

-

 

http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFA1-A/AFA118Q.Seq.d/

 

AFA118P
(Link to Original site)

 

 

>AFA118 (AFA118Q) /CSM/AF/AFA1-A/AFA118Q.Seq.d/

CTGTTGGCCTACTGGCCAATCATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAA

GGAAAGGAATACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAA

TTTTGCATTATCAACAGTTCATTTCAAAGGATACCTTTGATAACGATTGGGAATCAAGAT

GGGTTGTTAGTGATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAG

GTAAATGGTTTGGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCT

ACGCTGTATCAGCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAAT

ACACTGTAAAGAATGAACAAAAAGTTGXXXXXXXXXXGGTCATGACGATATCCCAGCTTC

AATCGTTGATCCAGAAGCTGTCAAACCAGAGGATTGGAATGAAGAAGACGACGGTGAATG

GGAAGCCCCAACCATCGCCAATCCAGAATACAAAGGTGAATGGAAAGCAAAGAAAATCCC

AAATCCAGAATACAAAGGTGAATGGGTACACCCATTAATTGATAACCCAGAATACGCTGA

AGACAATGAACTCTACCTCTTTAATGATCTCGGTGCTATCGGTTTCGAATTATGGCAAGT

TAAATCTGGTTCCATCTTTAACAATATGATCGTCACCGACTCTGTCGAAGAAGCTAAAGA

TTTCTCTGAAAAGACCTTTGTTGCCAACCAAGAAGCCGAAAAGAAAATGTTTGACGACCT

CGAAGCCGCCAAAGCTGAAGAGAGAAAGAAAGCTGACGAAAAATTAGCTGCCGAAAAAGC

TGCTGAAAAAGAAGCCGAAGAAGCTGATGAAGAAGAAGAAGAAGTCGCTGAAGAAGATTT

AGTTAAAACTGATGACAAAAAAGAAGAAGTCAAAAAATCAACCAAAAAAGTT

 

2001. 6. 1

 

 

vgllanhhiynyiffv**krkgipt*dfycv*fs*FLFSILHYQQFISKDTFDNDWESRW

VVSDWHKEDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLVLQY

TVKNEQKV---



---GHDDIPASIVDPEAVKPEDWNEEDDGEWEAPTIANPEYKGEWKAKKIPNPEYKGEWV

HPLIDNPEYAEDNELYLFNDLGAIGFELWQVKSGSIFNNMIVTDSVEEAKDFSEKTFVAN

QEAEKKMFDDLEAAKAEERKKADEKLAAEKAAEKEAEEADEEEEEVAEEDLVKTDDKKEE

VKKSTKKV

 

 

Frame A:

llaywpiiifiiisflfnkkgkeyqhetfivfnflsfcfqfciinssfqriplitignqd

gllvigikkmvnqvn*filqvnglvmkikkvfklvkmlvstlyqlnsqvsvtkvki*fsn

tl*rmnkkl---



---GHDDIPASIVDPEAVKPEDWNEEDDGEWEAPTIANPEYKGEWKAKKIPNPEYKGEWV

HPLIDNPEYAEDNELYLFNDLGAIGFELWQVKSGSIFNNMIVTDSVEEAKDFSEKTFVAN

QEAEKKMFDDLEAAKAEERKKADEKLAAEKAAEKEAEEADEEEEEVAEEDLVKTDDKKEE

VKKSTKKV



Frame B:

cwptgqssyl*lylfclikkerntnmrlllcliflvfvfnfalstvhfkgyl**rlgikm

gc**la*rrw*ir*issycr*mvw**kskrysn**rcsflrcis*ipkfq*qr*rfsspi

hcke*tks---



---vmtisqlqsliqklsnqrigmkkttvngkpqpspiqntkvngkqrksqiqntkvngy

th*litqntlktmnstslmisvlsvsnygklnlvpslti*ssptlskklkislkrpllpt

kkpkrkclttskppklkrerkltkn*lpkkllkkkpkklmkkkkkslkki*lklmtkkkk

sknqpkk



Frame C:

vgllanhhiynyiffv**krkgipt*dfycv*fs*FLFSILHYQQFISKDTFDNDWESRW

VVSDWHKEDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLVLQY

TVKNEQKV---



---s*rypsfnr*srscqtrgle*rrrr*mgspnhrqsriqr*meskenpksriqr*mgt

pin**prir*rq*tlpl**srcyrfrimas*iwfhl*qydrhrlcrrs*rfl*kdlccqp

rsrkenv*rprsrqs*rekes*rkiscrksc*krsrrs**rrrrsr*rrfs*n**qkrrs

qkinqks

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



VFM129 (VFM129Q) /CSM/VF/VFM1-B/VFM129Q.Seq.d/                        799   0.0

VFL130 (VFL130Q) /CSM/VF/VFL1-B/VFL130Q.Seq.d/                        799   0.0

VFK631 (VFK631Q) /CSM/VF/VFK6-B/VFK631Q.Seq.d/                        799   0.0

VFK516 (VFK516Q) /CSM/VF/VFK5-A/VFK516Q.Seq.d/                        799   0.0

VFI619 (VFI619Q) /CSM/VF/VFI6-A/VFI619Q.Seq.d/                        799   0.0

VFG242 (VFG242Q) /CSM/VF/VFG2-B/VFG242Q.Seq.d/                        799   0.0

VFE671 (VFE671Q) /CSM/VF/VFE6-C/VFE671Q.Seq.d/                        799   0.0

VFE283 (VFE283Q) /CSM/VF/VFE2-D/VFE283Q.Seq.d/                        799   0.0

VFE122 (VFE122Q) /CSM/VF/VFE1-A/VFE122Q.Seq.d/                        799   0.0

VFD449 (VFD449Q) /CSM/VF/VFD4-C/VFD449Q.Seq.d/                        799   0.0

 

2004.12.25

 

 


                                                               Score     E

Sequences producing significant alignments:                    (bits)  Value  N



U36937|U36937.1 Dictyostelium discoideum calreticulin mRNA, complete cds.   799  0.0  5

BH160872|BH160872.1 ENTRI18TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    80  1e-11  2

BI921109|BI921109.1 EST541012 tomato callus Lycopersicon esculentum cDNA clone cLEC72A21 5' end, mRNA sequence.    74  4e-11  2

AZ543757|AZ543757.1 ENTGD24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    80  6e-11  1

BE459798|BE459798.1 EST415090 tomato developing/immature green fruit Lycopersicon esculentum cDNA clone cLEM8G13, mRNA sequence.    74  3e-09  1

AI771812|AI771812.1 EST252912 tomato ovary, TAMU Lycopersicon esculentum cDNA clone cLED38E1, mRNA sequence.    74  3e-09  1

BE435540|BE435540.1 EST406618 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG27F24, mRNA sequence.    74  3e-09  1

AW932476|AW932476.1 EST358319 tomato fruit mature green, TAMU Lycopersicon esculentum cDNA clone cLEF48O8 5', mRNA sequence.    74  3e-09  1

AW033447|AW033447.1 EST277018 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC28B21 similar to calreticulin, putative, mRNA sequence.    74  3e-09  1

AI489195|AI489195.1 EST247534 tomato ovary, TAMU Lycopersicon esculentum cDNA clone cLED17D1, mRNA sequence.    74  3e-09  1

 

2003. 7.22

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



U36937_1(U36937|pid:none) Dictyostelium discoideum calreticulin ...   234   4e-60

AF052978_1(AF052978|pid:none) Dirofilaria immitis calreticulin p...   149   1e-34

(Q9STD3) RecName: Full=Calreticulin; Flags: Precursor;  &AJ00076...   147   5e-34

JH0795(JH0795;B31409;F60977) calreticulin precursor - California...   147   6e-34

AF283816_1(AF283816|pid:none) Pinus taeda calreticulin mRNA, com...   145   1e-33

(Q9XF98) RecName: Full=Calreticulin; Flags: Precursor;  &AF13473...   145   2e-33

AY510702_1(AY510702|pid:none) Haemonchus contortus calreticulin-...   145   2e-33

AM445600_2(AM445600|pid:none) Vitis vinifera contig VV78X277184....   144   4e-33

A32507(A32507;A28813)41K larval antigen - nematode (Onchocerca v...   144   5e-33

AC133339_28(AC133339|pid:none) Oryza sativa chromosome 3 BAC OSJ...   144   5e-33

 

2009. 3.25

 

 


 psg: 0.89  gvh: 0.35  alm: 0.47  top: 0.33  tms: 0.00  mit: 0.20  mip: 0.10

 nuc: 0.06  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00

 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00

 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00

 m3a: 0.00  m3b: 0.00  m_ : 1.00 



	 40.0 %: cytoplasmic

	 36.0 %: nuclear

	 12.0 %: vacuolar

	  4.0 %: cytoskeletal

	  4.0 %: mitochondrial

	  4.0 %: peroxisomal



>> prediction for AFA118 is cyt

 

AFA118F

 

 

>AFA118F.Seq

CTGTTGGCCTACTGGCCAATCATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAA

GGAAAGGAATACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAA

TTTTGCATTATCAACAGTTCATTTCAAAGGATACCTTTGATAACGATTGGGAATCAAGAT

GGGTTGTTAGTGATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAG

GTAAATGGTTTGGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCT

ACGCTGTATCAGCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAAT

ACACTGTAAAGAATGAACAAAAAGTTG----------

 

387

 

AFA118Z

 

 

>AFA118Z.Seq

----------GGTCATGACGATATCCCAGCTTCAATCGTTGATCCAGAAGCTGTCAAACC

AGAGGATTGGAATGAAGAAGACGACGGTGAATGGGAAGCCCCAACCATCGCCAATCCAGA

ATACAAAGGTGAATGGAAAGCAAAGAAAATCCCAAATCCAGAATACAAAGGTGAATGGGT

ACACCCATTAATTGATAACCCAGAATACGCTGAAGACAATGAACTCTACCTCTTTAATGA

TCTCGGTGCTATCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCCATCTTTAACAATAT

GATCGTCACCGACTCTGTCGAAGAAGCTAAAGATTTCTCTGAAAAGACCTTTGTTGCCAA

CCAAGAAGCCGAAAAGAAAATGTTTGACGACCTCGAAGCCGCCAAAGCTGAAGAGAGAAA

GAAAGCTGACGAAAAATTAGCTGCCGAAAAAGCTGCTGAAAAAGAAGCCGAAGAAGCTGA

TGAAGAAGAAGAAGAAGTCGCTGAAGAAGATTTAGTTAAAACTGATGACAAAAAAGAAGA

AGTCAAAAAATCAACCAAAAAAGTT

 

555

 

AFA118P

 

 

>AFA118P.Seq

CTGTTGGCCTACTGGCCAATCATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAA

GGAAAGGAATACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAA

TTTTGCATTATCAACAGTTCATTTCAAAGGATACCTTTGATAACGATTGGGAATCAAGAT

GGGTTGTTAGTGATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAG

GTAAATGGTTTGGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCT

ACGCTGTATCAGCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAAT

ACACTGTAAAGAATGAACAAAAAGTTG----------GGTCATGACGATATCCCAGCTTC

AATCGTTGATCCAGAAGCTGTCAAACCAGAGGATTGGAATGAAGAAGACGACGGTGAATG

GGAAGCCCCAACCATCGCCAATCCAGAATACAAAGGTGAATGGAAAGCAAAGAAAATCCC

AAATCCAGAATACAAAGGTGAATGGGTACACCCATTAATTGATAACCCAGAATACGCTGA

AGACAATGAACTCTACCTCTTTAATGATCTCGGTGCTATCGGTTTCGAATTATGGCAAGT

TAAATCTGGTTCCATCTTTAACAATATGATCGTCACCGACTCTGTCGAAGAAGCTAAAGA

TTTCTCTGAAAAGACCTTTGTTGCCAACCAAGAAGCCGAAAAGAAAATGTTTGACGACCT

CGAAGCCGCCAAAGCTGAAGAGAGAAAGAAAGCTGACGAAAAATTAGCTGCCGAAAAAGC

TGCTGAAAAAGAAGCCGAAGAAGCTGATGAAGAAGAAGAAGAAGTCGCTGAAGAAGATTT

AGTTAAAACTGATGACAAAAAAGAAGAAGTCAAAAAATCAACCAAAAAAGTT

 

942

 

-

 

 

-

 

-

 

AF
(Link to library)

AFA121
(Link to dictyBase)

 - - -

Contig-U16381-1

AFA121Z
(Link to Original site)

-

-

AFA121Z

557

-

-

-

-
Show
AFA121

AF
(Link to library)

 

AFA121
(Link to dictyBase)

 

-  

-  

-  

Contig-U16381-1

 

http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFA1-A/AFA121Q.Seq.d/

 

AFA121Z
(Link to Original site)

 

 

>AFA121 (AFA121Q) /CSM/AF/AFA1-A/AFA121Q.Seq.d/

XXXXXXXXXXTGAAAAATGTGTTGCCACCAAAGACAGAATCATTTGTGTAAAACCAACTT

GTNATAATACTCGTTGTCCTCCAAATTACCATTGCATATGTGGTGATAAAATTGATGGTG

TAAAATGTGTTCCAGATTGTAAGAAAGCAAGATGTGATGATGTCGAATGTCCAGATTTCC

ATAGATGTGTTGAAAGACGTGGTGGTATCTTAAGTTGTGAATTTGATCCACCAAGACAAC

CAAGATCCCTTGATTGGGCTGAAAATGAAAATGATGATCGTGACTATGATGATCGTGACT

ATGATGATGATGAATATGATGGTGATTATGATGGCCGTGACGGTGACTATGATGGTGATT

ATGATGGTGACCTATGATGATGACANCCTATTATGGTGATGCATGACTATGATAATGATT

GGGNCAATGATAATGATTGGGGTAATGCATTGGGATAATGATTGGGACAATGAAGATGGT

GATNATTGGCAATGATGATGACTNCCAAGCATGCAAAATGATGNAATGGGTACTATTAAG

CCATNATTTTTTAAAAAAAACATAATA

 

2001. 6. 1

 

 

---EKCVATKDRIICVKPTCXNTRCPPNYHCICGDKIDGVKCVPDCKKARCDDVECPDFH

RCVERRGGILSCEFDPPRQPRSLDWAENENDDRDYDDRDYDDDEYDGDYDGRDGDYDGDY

DGDL***xpimvmhdydndwxndndwgnalg**lgq*rw*xlammmtxkhak*xngyy*a

xif*kkhn

 

 

Frame A:

---EKCVATKDRIICVKPTCXNTRCPPNYHCICGDKIDGVKCVPDCKKARCDDVECPDFH

RCVERRGGILSCEFDPPRQPRSLDWAENENDDRDYDDRDYDDDEYDGDYDGRDGDYDGDY

DGDL***xpimvmhdydndwxndndwgnalg**lgq*rw*xlammmtxkhak*xngyy*a

xif*kkhn



Frame B:

---knvlppktesfv*nqlviilvvlqitiayvviklmv*nvfqivrkqdvmmsnvqisi

dvlkdvvvs*vvnlihqdnqdpliglkmkmmivtmmivtmmmmnmmvimmavtvtmmvim

mvtydddxllw*cmtmimigxmimigvmhwdndwdnedgdxwq***lpsmqndxmgtikp

xffkknii



Frame C:

---kmcchqrqnhlcktnlx*yslssklplhmw**n*wckmcsrl*eskm**crmsrfp*

mc*ktwwylkl*i*stkttkip*lg*k*k**s*l**s*l****i*w*l*wp*r*l*w*l*

w*pmmmtxyygda*l***lgq***lg*cigimigtmkmvxigndddxqackmmxwvllsh

xflkkt*

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



SLH820 (SLH820Q) /CSM/SL/SLH8-A/SLH820Q.Seq.d/                        486   e-136

SLH722 (SLH722Q) /CSM/SL/SLH7-A/SLH722Q.Seq.d/                        486   e-136

SLH522 (SLH522Q) /CSM/SL/SLH5-A/SLH522Q.Seq.d/                        486   e-136

SLH221 (SLH221Q) /CSM/SL/SLH2-A/SLH221Q.Seq.d/                        486   e-136

SLG753 (SLG753Q) /CSM/SL/SLG7-C/SLG753Q.Seq.d/                        486   e-136

SLG628 (SLG628Q) /CSM/SL/SLG6-B/SLG628Q.Seq.d/                        486   e-136

SLE585 (SLE585Q) /CSM/SL/SLE5-D/SLE585Q.Seq.d/                        486   e-136

SLE255 (SLE255Q) /CSM/SL/SLE2-C/SLE255Q.Seq.d/                        486   e-136

SLE191 (SLE191Q) /CSM/SL/SLE1-D/SLE191Q.Seq.d/                        486   e-136

SLC840 (SLC840Q) /CSM/SL/SLC8-B/SLC840Q.Seq.d/                        486   e-136

 

2004.12.25

 

 


                                                               Score     E

Sequences producing significant alignments:                    (bits)  Value  N



M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.   486  e-171  6

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.   486  e-170  6

AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence.   486  e-164  6

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.   486  e-160  6

AC130077|AC130077.2 Rattus norvegicus clone CH230-165L20, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44  1.8  1

AC103250|AC103250.5 Rattus norvegicus clone CH230-151F22, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44  1.8  1

AC128916|AC128916.3 Rattus norvegicus clone CH230-336D7, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44  3.9  2

AC129440|AC129440.3 Rattus norvegicus clone CH230-112K14, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    42  7.2  1

AC107339|AC107339.5 Rattus norvegicus clone CH230-138F16, WORKING DRAFT SEQUENCE, 2 unordered pieces.    42  7.2  1

AQ656767|AQ656767.1 Sheared DNA-21D17.TF Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-21D17, genomic survey sequence.    42  7.2  1

 

2003. 7.22

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...   200   2e-50

S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region...    75   1e-12

(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...    74   2e-12

AK126919_1(AK126919|pid:none) Homo sapiens cDNA FLJ44971 fis, cl...    41   0.018

AK091762_1(AK091762|pid:none) Homo sapiens cDNA FLJ34443 fis, cl...    41   0.018

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    39   0.12

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    38   0.20

U25680_1(U25680|pid:none) Rattus norvegicus preadipocyte factor ...    37   0.45

(P80370) RecName: Full=Protein delta homolog 1;          Short=D...    37   0.45

Z12172_1(Z12172|pid:none) H.sapiens dlk mRNA for putative homeot...    37   0.45

 

2009. 3.25

 

 


 psg: 0.81  gvh: 0.45  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00

 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00

 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00

 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00

 m3a: 0.00  m3b: 0.00  m_ : 1.00 



	 44.0 %: nuclear

	 36.0 %: cytoplasmic

	  8.0 %: cytoskeletal

	  4.0 %: mitochondrial

	  4.0 %: vacuolar

	  4.0 %: endoplasmic reticulum



>> prediction for AFA121 is nuc

 

-

 

 

-

 

-

 

AFA121Z

 

 

>AFA121Z.Seq

----------TGAAAAATGTGTTGCCACCAAAGACAGAATCATTTGTGTAAAACCAACTT

GTNATAATACTCGTTGTCCTCCAAATTACCATTGCATATGTGGTGATAAAATTGATGGTG

TAAAATGTGTTCCAGATTGTAAGAAAGCAAGATGTGATGATGTCGAATGTCCAGATTTCC

ATAGATGTGTTGAAAGACGTGGTGGTATCTTAAGTTGTGAATTTGATCCACCAAGACAAC

CAAGATCCCTTGATTGGGCTGAAAATGAAAATGATGATCGTGACTATGATGATCGTGACT

ATGATGATGATGAATATGATGGTGATTATGATGGCCGTGACGGTGACTATGATGGTGATT

ATGATGGTGACCTATGATGATGACANCCTATTATGGTGATGCATGACTATGATAATGATT

GGGNCAATGATAATGATTGGGGTAATGCATTGGGATAATGATTGGGACAATGAAGATGGT

GATNATTGGCAATGATGATGACTNCCAAGCATGCAAAATGATGNAATGGGTACTATTAAG

CCATNATTTTTTAAAAAAAACATAATA

 

557

 

-

 

 

-

 

-

 

-

 

 

-

 

-

 

AF
(Link to library)

AFA124
(Link to dictyBase)

 - - -

-

AFA124P
(Link to Original site)

AFA124F

486

AFA124Z

552

AFA124P

1038

-

-
Show
AFA124

AF
(Link to library)

 

AFA124
(Link to dictyBase)

 

-  

-  

-  

-

 

http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFA1-A/AFA124Q.Seq.d/

 

AFA124P
(Link to Original site)

 

 

>AFA124 (AFA124Q) /CSM/AF/AFA1-A/AFA124Q.Seq.d/

ACTGTTGGCCTACTGGAATTTCTCCAATCATCATATTTATAATTATATCTTTTTTGTTTA

ATAAAAAAGAAAGAATACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGT

TTTCAATTTTGCATTATCAACAGTTCATTTCAAAGGATACCTTTGATAACGATTGGGAAT

CAAGATGGGTTGTTAGTGATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATA

CTGCAGGTAAATGGTTTGGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTC

GTTTCTACGCTGTATCAGCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTC

TCCAATACACTGTAAAGAATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTAT

TACCATCCAAATTAGATCAATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTTG

GTCCAGXXXXXXXXXXAGCTTCAATCGTTGATCCAGAAGCTGTCAAACCAGAGGATTGGA

ATGAAGAAGACGACGGTGAATGGGAAGCCCCAACCATCGCCAATCCAGAATACAAAGGTG

AATGGAAAGCAAAGAAAATCCCAAATCCAGAATACAAAGGTGAATGGGTACACCCATTAA

TTGATAACCCAGAATACGCTGAAGACAATGAACTCTACCTCTTTAATGATCTCGGTGCTA

TCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCCATCTTTAACAATATGATCGTCACCG

ACTCTGTCGAAGAAGCTAAAGATTTCTCTGAAAAGACCTTTGTTGCCAACCAAGAAGCCG

AAAAGAAAATGTTTGACGACCTCGAAGCCGCCAAAGCTGAAGAGAGAAAGAAAGCTGACG

AAAAATTAGCTGCCGAAAAAGCTGCTGAAAAAGAAGCCGAAGAAGCTGATGAAGAAGAAG

AAGAAGTCGCTGAAGAAGATTTAGTTAAAACTGATGACAAAAAAGAAGAAGTCAAAAAAT

CAACCAAAAAAGTTGNTNCATGNACGAA

 

2001. 6. 1

 

 

cwptgispiiifiiisflfnkkeript*dfycv*fs*FLFSILHYQQFISKDTFDNDWES

RWVVSDWHKEDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLVL

QYTVKNEQKVDCGGSYIKLLPSKLDQSAFDGESEYSIMFGP---



---ASIVDPEAVKPEDWNEEDDGEWEAPTIANPEYKGEWKAKKIPNPEYKGEWVHPLIDN

PEYAEDNELYLFNDLGAIGFELWQVKSGSIFNNMIVTDSVEEAKDFSEKTFVANQEAEKK

MFDDLEAAKAEERKKADEKLAAEKAAEKEAEEADEEEEEVAEEDLVKTDDKKEEVKKSTK

KVXXXT

 

 

Frame A:

tvglleflqssyl*lylfclikkkeyqhetfivfnflsfcfqfciinssfqriplitign

qdgllvigikkmvnqvn*filqvnglvmkikkvfklvkmlvstlyqlnsqvsvtkvki*f

sntl*rmnkklivvvhtssyyhpn*inqhsmvnlniplclvq---



---sfnr*srscqtrgle*rrrr*mgspnhrqsriqr*meskenpksriqr*mgtpin**

prir*rq*tlpl**srcyrfrimas*iwfhl*qydrhrlcrrs*rfl*kdlccqprsrke

nv*rprsrqs*rekes*rkiscrksc*krsrrs**rrrrsr*rrfs*n**qkrrsqkinq

ksxxmxe



Frame B:

llaywnfsnhhiynyiffv**krkntnmrlllcliflvfvfnfalstvhfkgyl**rlgi

kmgc**la*rrw*ir*issycr*mvw**kskrysn**rcsflrcis*ipkfq*qr*rfss

pihcke*tks*lwwfihqvitiqirsisirw*i*ifhyvws---



---ASIVDPEAVKPEDWNEEDDGEWEAPTIANPEYKGEWKAKKIPNPEYKGEWVHPLIDN

PEYAEDNELYLFNDLGAIGFELWQVKSGSIFNNMIVTDSVEEAKDFSEKTFVANQEAEKK

MFDDLEAAKAEERKKADEKLAAEKAAEKEAEEADEEEEEVAEEDLVKTDDKKEEVKKSTK

KVXXXT



Frame C:

cwptgispiiifiiisflfnkkeript*dfycv*fs*FLFSILHYQQFISKDTFDNDWES

RWVVSDWHKEDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLVL

QYTVKNEQKVDCGGSYIKLLPSKLDQSAFDGESEYSIMFGP---



---lqsliqklsnqrigmkkttvngkpqpspiqntkvngkqrksqiqntkvngyth*lit

qntlktmnstslmisvlsvsnygklnlvpslti*ssptlskklkislkrpllptkkpkrk

clttskppklkrerkltkn*lpkkllkkkpkklmkkkkkslkki*lklmtkkkksknqpk

klxhxr

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



AFA124 (AFA124Q) /CSM/AF/AFA1-A/AFA124Q.Seq.d/                       1719   0.0

VFL283 (VFL283Q) /CSM/VF/VFL2-D/VFL283Q.Seq.d/                        948   0.0

VFL214 (VFL214Q) /CSM/VF/VFL2-A/VFL214Q.Seq.d/                        948   0.0

AFI321 (AFI321Q) /CSM/AF/AFI3-A/AFI321Q.Seq.d/                        948   0.0

AFA296 (AFA296Q) /CSM/AF/AFA2-D/AFA296Q.Seq.d/                        946   0.0

SFH596 (SFH596Q) /CSM/SF/SFH5-D/SFH596Q.Seq.d/                        942   0.0

AFA112 (AFA112Q) /CSM/AF/AFA1-A/AFA112Q.Seq.d/                        942   0.0

AFK274 (AFK274Q) /CSM/AF/AFK2-D/AFK274Q.Seq.d/                        934   0.0

AFK242 (AFK242Q) /CSM/AF/AFK2-B/AFK242Q.Seq.d/                        934   0.0

AFH646 (AFH646Q) /CSM/AF/AFH6-B/AFH646Q.Seq.d/                        934   0.0

 

2004.12.25

 

 


                                                               Score     E

Sequences producing significant alignments:                    (bits)  Value  N



U36937|U36937.1 Dictyostelium discoideum calreticulin mRNA, complete cds.   795  0.0  4

BD248385|BD248385.1 Gene participating in tolerance against environmental stress.    92  1e-19  2

BH160872|BH160872.1 ENTRI18TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    80  2e-14  3

BI921109|BI921109.1 EST541012 tomato callus Lycopersicon esculentum cDNA clone cLEC72A21 5' end, mRNA sequence.    74  5e-11  2

AZ543757|AZ543757.1 ENTGD24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    80  6e-11  1

AI771812|AI771812.1 EST252912 tomato ovary, TAMU Lycopersicon esculentum cDNA clone cLED38E1, mRNA sequence.    74  4e-09  1

BE435540|BE435540.1 EST406618 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG27F24, mRNA sequence.    74  4e-09  1

AW932476|AW932476.1 EST358319 tomato fruit mature green, TAMU Lycopersicon esculentum cDNA clone cLEF48O8 5', mRNA sequence.    74  4e-09  1

AW033447|AW033447.1 EST277018 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC28B21 similar to calreticulin, putative, mRNA sequence.    74  4e-09  1

AI489195|AI489195.1 EST247534 tomato ovary, TAMU Lycopersicon esculentum cDNA clone cLED17D1, mRNA sequence.    74  4e-09  1

 

2003. 7.22

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



U36937_1(U36937|pid:none) Dictyostelium discoideum calreticulin ...   239   1e-61

AB196794_1(AB196794|pid:none) Glycine max Gm crt-1 mRNA for calr...   194   5e-48

EF085019_1(EF085019|pid:none) Picea sitchensis clone WS0297_I16 ...   193   9e-48

EF146676_1(EF146676|pid:none) Populus trichocarpa clone WS01211_...   192   2e-47

AB021259_1(AB021259|pid:none) Oryza sativa mRNA for calcium-bind...   191   4e-47

AK104328_1(AK104328|pid:none) Oryza sativa Japonica Group cDNA c...   190   8e-47

(Q9SLY8) RecName: Full=Calreticulin; Flags: Precursor;  &AK06534...   190   8e-47

(Q9XF98) RecName: Full=Calreticulin; Flags: Precursor;  &AF13473...   189   1e-46

AC133339_28(AC133339|pid:none) Oryza sativa chromosome 3 BAC OSJ...   157   4e-37

EF084103_1(EF084103|pid:none) Picea sitchensis clone WS0274_F04 ...   157   5e-37

 

2009. 3.25

 

 


 psg: 0.89  gvh: 0.35  alm: 0.47  top: 0.33  tms: 0.00  mit: 0.20  mip: 0.10

 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00

 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00

 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00

 m3a: 0.00  m3b: 0.00  m_ : 1.00 



	 52.0 %: cytoplasmic

	 36.0 %: nuclear

	  4.0 %: mitochondrial

	  4.0 %: vesicles of secretory system

	  4.0 %: endoplasmic reticulum



>> prediction for AFA124 is cyt

 

AFA124F

 

 

>AFA124F.Seq

ACTGTTGGCCTACTGGAATTTCTCCAATCATCATATTTATAATTATATCTTTTTTGTTTA

ATAAAAAAGAAAGAATACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGT

TTTCAATTTTGCATTATCAACAGTTCATTTCAAAGGATACCTTTGATAACGATTGGGAAT

CAAGATGGGTTGTTAGTGATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATA

CTGCAGGTAAATGGTTTGGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTC

GTTTCTACGCTGTATCAGCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTC

TCCAATACACTGTAAAGAATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTAT

TACCATCCAAATTAGATCAATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTTG

GTCCAG----------

 

486

 

AFA124Z

 

 

>AFA124Z.Seq

----------AGCTTCAATCGTTGATCCAGAAGCTGTCAAACCAGAGGATTGGAATGAAG

AAGACGACGGTGAATGGGAAGCCCCAACCATCGCCAATCCAGAATACAAAGGTGAATGGA

AAGCAAAGAAAATCCCAAATCCAGAATACAAAGGTGAATGGGTACACCCATTAATTGATA

ACCCAGAATACGCTGAAGACAATGAACTCTACCTCTTTAATGATCTCGGTGCTATCGGTT

TCGAATTATGGCAAGTTAAATCTGGTTCCATCTTTAACAATATGATCGTCACCGACTCTG

TCGAAGAAGCTAAAGATTTCTCTGAAAAGACCTTTGTTGCCAACCAAGAAGCCGAAAAGA

AAATGTTTGACGACCTCGAAGCCGCCAAAGCTGAAGAGAGAAAGAAAGCTGACGAAAAAT

TAGCTGCCGAAAAAGCTGCTGAAAAAGAAGCCGAAGAAGCTGATGAAGAAGAAGAAGAAG

TCGCTGAAGAAGATTTAGTTAAAACTGATGACAAAAAAGAAGAAGTCAAAAAATCAACCA

AAAAAGTTGNTNCATGNACGAA

 

552

 

AFA124P

 

 

>AFA124P.Seq

ACTGTTGGCCTACTGGAATTTCTCCAATCATCATATTTATAATTATATCTTTTTTGTTTA

ATAAAAAAGAAAGAATACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGT

TTTCAATTTTGCATTATCAACAGTTCATTTCAAAGGATACCTTTGATAACGATTGGGAAT

CAAGATGGGTTGTTAGTGATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATA

CTGCAGGTAAATGGTTTGGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTC

GTTTCTACGCTGTATCAGCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTC

TCCAATACACTGTAAAGAATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTAT

TACCATCCAAATTAGATCAATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTTG

GTCCAG----------AGCTTCAATCGTTGATCCAGAAGCTGTCAAACCAGAGGATTGGA

ATGAAGAAGACGACGGTGAATGGGAAGCCCCAACCATCGCCAATCCAGAATACAAAGGTG

AATGGAAAGCAAAGAAAATCCCAAATCCAGAATACAAAGGTGAATGGGTACACCCATTAA

TTGATAACCCAGAATACGCTGAAGACAATGAACTCTACCTCTTTAATGATCTCGGTGCTA

TCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCCATCTTTAACAATATGATCGTCACCG

ACTCTGTCGAAGAAGCTAAAGATTTCTCTGAAAAGACCTTTGTTGCCAACCAAGAAGCCG

AAAAGAAAATGTTTGACGACCTCGAAGCCGCCAAAGCTGAAGAGAGAAAGAAAGCTGACG

AAAAATTAGCTGCCGAAAAAGCTGCTGAAAAAGAAGCCGAAGAAGCTGATGAAGAAGAAG

AAGAAGTCGCTGAAGAAGATTTAGTTAAAACTGATGACAAAAAAGAAGAAGTCAAAAAAT

CAACCAAAAAAGTTGNTNCATGNACGAA

 

1038

 

-

 

 

-

 

-

 

AF
(Link to library)

AFA125
(Link to dictyBase)

 - - -

-

AFA125F
(Link to Original site)

AFA125F

474

-

-

-

-

-

-
Show
AFA125

AF
(Link to library)

 

AFA125
(Link to dictyBase)

 

-  

-  

-  

-

 

http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFA1-B/AFA125Q.Seq.d/

 

AFA125F
(Link to Original site)

 

 

>AFA125 (AFA125Q) /CSM/AF/AFA1-B/AFA125Q.Seq.d/

ACTGTTGGCCTACTGGNATAAAAGAATATTAAATAATTAAATATTAAAAAATGTCATCAA

TTGGTATTGATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTG

AAATTATTGCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTACTGATA

CAGAACGTTTAATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACCAATACAG

TATTTGATGCTAAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATA

TGAAACATTGGCCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTG

AATTCAAAGGTGAAACTAAAGTTTTCTCACCAGAAGAAATCTCTTCAATGGTACTCTTAA

AAATGAAAGAAACCGCTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAAXXXXXX

XXXX

 

2001. 6. 1

 

 

cwptgikey*iiky*KMSSIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDT

ERLIGDAAKNQVAMNPTNTVFDAKRLIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVE

FKGETKVFSPEEISSMVLLKMKETAEAYLGKTINNAV---

 

 

Frame A:

tvgllx*knik*lnikkchqlvli*vqhihvlvfgkmivlkllqmikvieplhlmlhlli

qnv*lvmlqriklq*iqpiqylmlnv*lvvnlvtkkfkvi*nighsklfqrmvishifkl

nskvklkfshqkkslqwys*k*kkplklilvkpliml---



Frame B:

llaywxkrilnn*ilknvinwy*frynifmcwclak*sc*nyck*sr**nhsilcciy*y

rtfnw*cckesscnesnqysi*c*tfnws*i**qrssk*yetlaiqsyskgw**atyss*

iqr*n*sfltrrnlfngtlknernr*slsw*nh**cc---



Frame C:

cwptgikey*iiky*KMSSIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDT

ERLIGDAAKNQVAMNPTNTVFDAKRLIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVE

FKGETKVFSPEEISSMVLLKMKETAEAYLGKTINNAV---

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



AFA125 (AFA125Q) /CSM/AF/AFA1-B/AFA125Q.Seq.d/                        934   0.0

AFO609 (AFO609Q) /CSM/AF/AFO6-A/AFO609Q.Seq.d/                        918   0.0

SFH267 (SFH267Q) /CSM/SF/SFH2-C/SFH267Q.Seq.d/                        906   0.0

SFG487 (SFG487Q) /CSM/SF/SFG4-D/SFG487Q.Seq.d/                        906   0.0

SFE519 (SFE519Q) /CSM/SF/SFE5-A/SFE519Q.Seq.d/                        906   0.0

AFH163 (AFH163Q) /CSM/AF/AFH1-C/AFH163Q.Seq.d/                        906   0.0

CHG388 (CHG388Q) /CSM/CH/CHG3-D/CHG388Q.Seq.d/                        898   0.0

CFD584 (CFD584Q) /CSM/CF/CFD5-D/CFD584Q.Seq.d/                        898   0.0

VHQ260 (VHQ260Q) /CSM/VH/VHQ2-C/VHQ260Q.Seq.d/                        892   0.0

VHQ240 (VHQ240Q) /CSM/VH/VHQ2-B/VHQ240Q.Seq.d/                        892   0.0

 

2002.10.28

 

 


                                                               Score     E

Sequences producing significant alignments:                    (bits)  Value  N



X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70).   906  0.0  1

L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,.   656  0.0  1

AF025951|AF025951.1 Dictyostelium discoideum heat-shock cognate protein 70 (hsc70) mRNA, complete cds.   252  e-110  2

AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.   252  e-106  4

AZ534967|AZ534967.1 ENTCP87TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.   182  5e-56  5

BH157764|BH157764.1 ENTRX32TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.   182  5e-56  5

BH160786|BH160786.1 ENTQX06TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.   182  6e-56  5

AZ550378|AZ550378.1 ENTEY63TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.   182  6e-56  5

AZ543781|AZ543781.1 ENTFH69TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.   182  6e-56  5

BH166802|BH166802.1 ENTSR02TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.   182  7e-56  5

 

2003. 7.22

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   286   2e-76

S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...   286   2e-76

(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2;     ...   266   2e-70

AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc...   266   2e-70

(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3;           248   5e-65

AY495382_1(AY495382|pid:none) Trypanosoma rangeli isolate Tre he...   247   1e-64

U71151_1(U71151|pid:none) Pneumocystis carinii heat shock protei...   246   2e-64

U80967_1(U80967|pid:none) Pneumocystis carinii f. sp. carinii he...   246   2e-64

FJ168549_2(FJ168549|pid:none) Bodo saltans clone fosmid 16K02, c...   245   4e-64

A25398(A25398)dnaK-type molecular chaperone - Trypanosoma brucei      244   5e-64

 

2009. 3.25

 

 


 psg: 0.87  gvh: 0.35  alm: 0.46  top: 0.27  tms: 0.00  mit: 0.19  mip: 0.00

 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00

 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00

 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00

 m3a: 0.00  m3b: 0.00  m_ : 1.00 



	 52.0 %: cytoplasmic

	 32.0 %: nuclear

	  8.0 %: vacuolar

	  4.0 %: vesicles of secretory system

	  4.0 %: endoplasmic reticulum



>> prediction for AFA125 is cyt

 

AFA125F

 

 

>AFA125F.Seq

ACTGTTGGCCTACTGGNATAAAAGAATATTAAATAATTAAATATTAAAAAATGTCATCAA

TTGGTATTGATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTG

AAATTATTGCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTACTGATA

CAGAACGTTTAATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACCAATACAG

TATTTGATGCTAAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATA

TGAAACATTGGCCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTG

AATTCAAAGGTGAAACTAAAGTTTTCTCACCAGAAGAAATCTCTTCAATGGTACTCTTAA

AAATGAAAGAAACCGCTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAA------

----

 

474

 

-

 

 

-

 

-

 

-

 

 

-

 

-

 

-

 

 

-

 

-

 

AF
(Link to library)

AFA126
(Link to dictyBase)

 - - -

Contig-U12019-1

AFA126Z
(Link to Original site)

-

-

AFA126Z

549

-

-

-

-
Show
AFA126

AF
(Link to library)

 

AFA126
(Link to dictyBase)

 

-  

-  

-  

Contig-U12019-1

 

http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFA1-B/AFA126Q.Seq.d/

 

AFA126Z
(Link to Original site)

 

 

>AFA126 (AFA126Q) /CSM/AF/AFA1-B/AFA126Q.Seq.d/

XXXXXXXXXXTAAACAATCAACATTTAGATGTATTGAATGTGGTTTCGATTTCATTGAAA

TTCATTGTGCTCATGGTTATTTATTAAACCAATTTCTATCACCAACTTCAAATAAAAGAA

CTGATGAGTATGGTGGTTCTTTTGAAAATAGAATTAGAATAGTATTAGAAATTATTGAAG

CTGTTCGTTCAGTTTGGTCAAGAGATAAAGCTTTAGGTGTTCGTTTATCATGCGTTGAAT

GGACTGATGATGGTTGGGGAATGGAAGATACTATTAAATTTACAAAAGTTTTAAAAGATT

TAGGTACAATTGATTTAATTGATTGTTCAAGTGGTGGTAATAATCATTTACAAAAAATTA

AAGTTTGTCCAATGTATCAAGTTCCATTTGCAGATTCTGTAAAGAAAACATTAAATGAAA

ATAGTGGTGGTGGTGTTGGTGATGAAAATAAAATTAAAGTTGCGACTGTTGGTTTAATTA

ATCATGGTGATGAAATTGAATCAATTTTACAAGAAAATCGTGCTGATATCGTTATGTGTG

CTAGAAGTTTTTTACGTAA

 

2001. 6. 1

 

 

---KQSTFRCIECGFDFIEIHCAHGYLLNQFLSPTSNKRTDEYGGSFENRIRIVLEIIEA

VRSVWSRDKALGVRLSCVEWTDDGWGMEDTIKFTKVLKDLGTIDLIDCSSGGNNHLQKIK

VCPMYQVPFADSVKKTLNENSGGGVGDENKIKVATVGLINHGDEIESILQENRADIVMCA

RSFLR

 

 

Frame A:

---KQSTFRCIECGFDFIEIHCAHGYLLNQFLSPTSNKRTDEYGGSFENRIRIVLEIIEA

VRSVWSRDKALGVRLSCVEWTDDGWGMEDTIKFTKVLKDLGTIDLIDCSSGGNNHLQKIK

VCPMYQVPFADSVKKTLNENSGGGVGDENKIKVATVGLINHGDEIESILQENRADIVMCA

RSFLR



Frame B:

---nnqhldvlnvvsislkfivlmviy*tnfyhqlqikelmsmvvllkiele*y*kllkl

fvqfgqeikl*vfvyhalnglmmvgewkillnlqkf*ki*vqli*livqvvviiiykklk

fvqcikfhlqil*rkh*mkivvvvlvmkiklklrllv*limvmklnqfykkivlislcvl

evfyv



Frame C:

---tini*my*mwfrfh*nslcswlfikpisitnfk*kn**vwwff*k*n*nsirny*sc

sfslvkr*sfrcsfimr*md**wlgngryy*iyksfkrfryn*fn*lfkww**sftkn*s

lsnvsssicrfckenik*k*wwwcw**k*n*scdcwfn*sw**n*inftrksc*yryvc*

kfft*

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



AFA126 (AFA126Q) /CSM/AF/AFA1-B/AFA126Q.Seq.d/                       1088   0.0

CFG462 (CFG462Q) /CSM/CF/CFG4-C/CFG462Q.Seq.d/                       1080   0.0

CFC138 (CFC138Q) /CSM/CF/CFC1-B/CFC138Q.Seq.d/                       1080   0.0

AFO707 (AFO707Q) /CSM/AF/AFO7-A/AFO707Q.Seq.d/                       1080   0.0

AFO370 (AFO370Q) /CSM/AF/AFO3-C/AFO370Q.Seq.d/                       1080   0.0

AFE844 (AFE844Q) /CSM/AF/AFE8-B/AFE844Q.Seq.d/                       1080   0.0

AFJ159 (AFJ159Q) /CSM/AF/AFJ1-C/AFJ159Q.Seq.d/                       1078   0.0

CFC790 (CFC790Q) /CSM/CF/CFC7-D/CFC790Q.Seq.d/                       1068   0.0

AFB643 (AFB643Q) /CSM/AF/AFB6-B/AFB643Q.Seq.d/                       1066   0.0

AFO487 (AFO487Q) /CSM/AF/AFO4-D/AFO487Q.Seq.d/                       1065   0.0

 

2004.12.25

 

 


                                                               Score     E

Sequences producing significant alignments:                    (bits)  Value  N



AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    42  1e-11  9

AZ931849|AZ931849.1 474.dhz90h07.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz90h07.s1, DNA sequence.    56  5e-04  1

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36  5e-04  11

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    36  0.001  8

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34  0.004  11

AZ692750|AZ692750.1 ENTKN19TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52  0.007  1

AZ528469|AZ528469.1 ENTCE72TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52  0.007  1

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    34  0.013  10

AC122728|AC122728.16 Medicago truncatula clone mth2-22l4, WORKING DRAFT SEQUENCE, 6 unordered pieces.    46  0.027  5

CD477634|CD477634.1 eca01-27ms1-a05 Eca01 Eschscholzia californica cDNA clone eca01-27ms1-a05 5', mRNA sequence.    50  0.029  1

 

2003. 7.22

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



AC117072_14(AC117072|pid:none) Dictyostelium discoideum chromoso...   184   2e-45

CP000473_670(CP000473|pid:none) Solibacter usitatus Ellin6076, c...   169   3e-41

CP000075_1298(CP000075|pid:none) Pseudomonas syringae pv. syring...   168   1e-40

CP000058_1315(CP000058|pid:none) Pseudomonas syringae pv. phaseo...   167   2e-40

CP000926_1078(CP000926|pid:none) Pseudomonas putida GB-1, comple...   161   1e-38

CP000712_4190(CP000712|pid:none) Pseudomonas putida F1, complete...   160   3e-38

CP000949_4113(CP000949|pid:none) Pseudomonas putida W619, comple...   159   3e-38

CP000359_959(CP000359|pid:none) Deinococcus geothermalis DSM 113...   159   3e-38

CP000094_1035(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ...   159   3e-38

CP000304_2699(CP000304|pid:none) Pseudomonas stutzeri A1501, com...   159   3e-38

 

2009. 3.25

 

 


 psg: 0.75  gvh: 0.41  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.02

 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00

 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00

 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00

 m3a: 0.00  m3b: 0.00  m_ : 1.00 



	 36.0 %: cytoplasmic

	 28.0 %: nuclear

	 20.0 %: mitochondrial

	  8.0 %: cytoskeletal

	  4.0 %: endoplasmic reticulum

	  4.0 %: peroxisomal



>> prediction for AFA126 is cyt

 

-

 

 

-

 

-

 

AFA126Z

 

 

>AFA126Z.Seq

----------TAAACAATCAACATTTAGATGTATTGAATGTGGTTTCGATTTCATTGAAA

TTCATTGTGCTCATGGTTATTTATTAAACCAATTTCTATCACCAACTTCAAATAAAAGAA

CTGATGAGTATGGTGGTTCTTTTGAAAATAGAATTAGAATAGTATTAGAAATTATTGAAG

CTGTTCGTTCAGTTTGGTCAAGAGATAAAGCTTTAGGTGTTCGTTTATCATGCGTTGAAT

GGACTGATGATGGTTGGGGAATGGAAGATACTATTAAATTTACAAAAGTTTTAAAAGATT

TAGGTACAATTGATTTAATTGATTGTTCAAGTGGTGGTAATAATCATTTACAAAAAATTA

AAGTTTGTCCAATGTATCAAGTTCCATTTGCAGATTCTGTAAAGAAAACATTAAATGAAA

ATAGTGGTGGTGGTGTTGGTGATGAAAATAAAATTAAAGTTGCGACTGTTGGTTTAATTA

ATCATGGTGATGAAATTGAATCAATTTTACAAGAAAATCGTGCTGATATCGTTATGTGTG

CTAGAAGTTTTTTACGTAA

 

549

 

-

 

 

-

 

-

 

-

 

 

-

 

-

 

AF
(Link to library)

AFA127
(Link to dictyBase)

 - - -

Contig-U15664-1

AFA127Z
(Link to Original site)

-

-

AFA127Z

642

-

-

-

-
Show
AFA127

AF
(Link to library)

 

AFA127
(Link to dictyBase)

 

-  

-  

-  

Contig-U15664-1

 

http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFA1-B/AFA127Q.Seq.d/

 

AFA127Z
(Link to Original site)

 

 

>AFA127 (AFA127Q) /CSM/AF/AFA1-B/AFA127Q.Seq.d/

XXXXXXXXXXAGTTACCAAATCGTATTAATACTGATTCAACTGGTGGTATTTTAATGTCA

TATAAAGATAAACTTCATCTTTTGGAATTATCTCAAGTTAAACCAGAGAAATTAAAGATC

TTTAAAGATTTTAAACTTTGGAATACAAATAATATTTGGGTTAATTCGAAATCAGTTTCA

AATTTAATTAAAGAAGATAAATTAGATTTAGATTGGATTGTTAATTATCCACTTGAAAAT

CATAAAGCAATGGTACAATTAGAAACACCAGCAGGTATGGGTATTCAAAATTTTAAGAAT

TCAGTTGCAATTTTTGTACCACGTGATAGATATCGTCCAATTAAATCAACAAGTCAATTA

TTGGTTGCACAATCAAATATTTTCCAATTTGATCATGGTCAAGTTAAATTAAATTCAAAG

AGAGAAGGTCAAGATGTACCACTTGTTAAATTGGGTGAAGAATTTTCAACAGTTTCAGAT

TATGAAAAGAGATTTAAATCAATTCCAGATTTATTGGAATTGGATCATCTTACTGTTTCT

GGTGATGTTTACTTTGGTTCAAGAATTACTCTTAAAGGTACAGTCATTATTGTAGCTAAT

CATGGTGAACGTGTTGATATTNCCAGATGGTGTGGTTTTAGAAAATAAAGTA

 

2001. 6. 1

 

 

---LPNRINTDSTGGILMSYKDKLHLLELSQVKPEKLKIFKDFKLWNTNNIWVNSKSVSN

LIKEDKLDLDWIVNYPLENHKAMVQLETPAGMGIQNFKNSVAIFVPRDRYRPIKSTSQLL

VAQSNIFQFDHGQVKLNSKREGQDVPLVKLGEEFSTVSDYEKRFKSIPDLLELDHLTVSG

DVYFGSRITLKGTVIIVANHGERVDIXRWCGFRK*s

 

 

Frame A:

---vtksy*y*fnwwyfnvi*r*tssfgiiss*treikdl*rf*tleyk*ylg*feisfk

fn*rr*irfrldc*lst*ks*sngtirntsrygyskf*efscnfctt**issn*inksii

gctikyfpi*swss*ikfkerrsrcttc*ig*rifnsfrl*kei*insrfigigssycfw

*cllwfknys*ryshycs*sw*tc*yxqmvwf*kik



Frame B:

---LPNRINTDSTGGILMSYKDKLHLLELSQVKPEKLKIFKDFKLWNTNNIWVNSKSVSN

LIKEDKLDLDWIVNYPLENHKAMVQLETPAGMGIQNFKNSVAIFVPRDRYRPIKSTSQLL

VAQSNIFQFDHGQVKLNSKREGQDVPLVKLGEEFSTVSDYEKRFKSIPDLLELDHLTVSG

DVYFGSRITLKGTVIIVANHGERVDIXRWCGFRK*s



Frame C:

---yqivliliqlvvf*chikinfifwnylklnqrn*rslkilnfgiqiifglirnqfqi

*lkkin*i*iglliihlkiikqwyn*khqqvwvfkilriqlqflyhvidivqlnqqvnyw

lhnqifsnlimvkln*iqrekvkmyhllnwvknfqqfqimkrdlnqfqiywnwiillflv

mftlvqelllkvqsll*limvnvlixpdgvvlenkv

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



AFA127 (AFA127Q) /CSM/AF/AFA1-B/AFA127Q.Seq.d/                       1267   0.0

AFK586 (AFK586Q) /CSM/AF/AFK5-D/AFK586Q.Seq.d/                       1241   0.0

VFL461 (VFL461Q) /CSM/VF/VFL4-C/VFL461Q.Seq.d/                       1237   0.0

SSI236 (SSI236Q) /CSM/SS/SSI2-B/SSI236Q.Seq.d/                       1237   0.0

SFJ715 (SFJ715Q) /CSM/SF/SFJ7-A/SFJ715Q.Seq.d/                       1237   0.0

SFI711 (SFI711Q) /CSM/SF/SFI7-A/SFI711Q.Seq.d/                       1237   0.0

SFI662 (SFI662Q) /CSM/SF/SFI6-C/SFI662Q.Seq.d/                       1237   0.0

SFI489 (SFI489Q) /CSM/SF/SFI4-D/SFI489Q.Seq.d/                       1237   0.0

SFH824 (SFH824Q) /CSM/SF/SFH8-A/SFH824Q.Seq.d/                       1237   0.0

SFH134 (SFH134Q) /CSM/SF/SFH1-B/SFH134Q.Seq.d/                       1237   0.0

 

2001.11.24

 

 


                                                               Score     E

Sequences producing significant alignments:                    (bits)  Value  N



Y00145|Y00145.1 Dictyostelium discoideum UDP glucose pyrophosphorylase gene (UDPGP;  EC 2.7.7.9).   773  0.0  3

AF150929|AF150929.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase 2 (UDPGP2) mRNA, complete cds.    50  2e-05  3

BI322718|BI322718.1 kx15d03.y3 Parastrongyloides trichosuri IL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence.    36  0.023  2

AX348530|AX348530.1 Sequence 38 from Patent WO0202809.            50  0.034  1

AX251260|AX251260.1 Sequence 228 from Patent WO0168912.           30  0.036  5

AC021393|AC021393.10 Homo sapiens chromosome 8, clone RP11-27P7, complete sequence.    48  0.14  1

AC069520|AC069520.9 Homo sapiens chromosome 3 clone RP11-269A14, WORKING DRAFT SEQUENCE, 6 unordered pieces.    48  0.14  1

AL139078|AL139078.2 Campylobacter jejuni NCTC11168 complete genome; segment 5/6.    34  0.18  9

BI743473|BI743473.1 kx44f12.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence.    36  0.25  2

AC025856|AC025856.13 Homo sapiens chromosome 8, clone RP11-430K7, complete sequence.    48  0.36  4

 

2003. 7.22

 

 


                                                                 Score    E

Sequences producing significant alignments:                      (bits) Value



(P08800) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   400   e-111

(Q54YZ0) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   201   1e-50

S35692(S35692)UTP-glucose-1-phosphate uridylyltransferase (EC 2....   199   7e-50

S62599(S62599)UTP-glucose-1-phosphate uridylyltransferase (EC 2....   199   7e-50

AK300731_1(AK300731|pid:none) Homo sapiens cDNA FLJ56155 complet...   199   7e-50

BC084711_1(BC084711|pid:none) Rattus norvegicus UDP-glucose pyro...   199   7e-50

(Q07130) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   199   7e-50

BC026626_1(BC026626|pid:none) Mus musculus UDP-glucose pyrophosp...   198   9e-50

(Q91ZJ5) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   198   9e-50

AK153885_1(AK153885|pid:none) Mus musculus 2 days neonate thymus...   198   9e-50

 

2009. 3.25

 

 


 psg: 0.90  gvh: 0.37  alm: 0.40  top: 0.43  tms: 0.00  mit: 0.28  mip: 0.02

 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00

 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00

 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00

 m3a: 0.00  m3b: 0.00  m_ : 1.00 



	 36.0 %: nuclear

	 32.0 %: cytoplasmic

	 20.0 %: cytoskeletal

	  4.0 %: mitochondrial

	  4.0 %: vacuolar

	  4.0 %: peroxisomal



>> prediction for AFA127 is nuc

 

-

 

 

-

 

-

 

AFA127Z

 

 

>AFA127Z.Seq

----------AGTTACCAAATCGTATTAATACTGATTCAACTGGTGGTATTTTAATGTCA

TATAAAGATAAACTTCATCTTTTGGAATTATCTCAAGTTAAACCAGAGAAATTAAAGATC

TTTAAAGATTTTAAACTTTGGAATACAAATAATATTTGGGTTAATTCGAAATCAGTTTCA

AATTTAATTAAAGAAGATAAATTAGATTTAGATTGGATTGTTAATTATCCACTTGAAAAT

CATAAAGCAATGGTACAATTAGAAACACCAGCAGGTATGGGTATTCAAAATTTTAAGAAT

TCAGTTGCAATTTTTGTACCACGTGATAGATATCGTCCAATTAAATCAACAAGTCAATTA

TTGGTTGCACAATCAAATATTTTCCAATTTGATCATGGTCAAGTTAAATTAAATTCAAAG

AGAGAAGGTCAAGATGTACCACTTGTTAAATTGGGTGAAGAATTTTCAACAGTTTCAGAT

TATGAAAAGAGATTTAAATCAATTCCAGATTTATTGGAATTGGATCATCTTACTGTTTCT

GGTGATGTTTACTTTGGTTCAAGAATTACTCTTAAAGGTACAGTCATTATTGTAGCTAAT

CATGGTGAACGTGTTGATATTNCCAGATGGTGTGGTTTTAGAAAATAAAGTA

 

642

 

-

 

 

-

 

-

 

-

 

 

-

 

-

 
97337 Found
1 2 3 .. 6490