DK963585
Clone id TST39A01NGRL0016_O22
Library
Length 667
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0016_O22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GAGAGAGAGAGAGAGACTCTGTGTTGTTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGA
GAGAGAGACTCTGTGTTGTTGTGTGTGTGTGTGTGAGAGAGAGGGCGTAGACCAACAAGA
CCCACCTGCTCGTTCTCCTTCGTACGAGCGTCACTCCCCTGCGCCCCTCACTCCCCCGCC
TGCATTGTAGTTCTCGTAAGCTGAGCTGAGCTGAGCTCTCCCATGGCCGCGCCTAGTAGG
CGCCGCAAACGCGCCCTCCCTTGCAACCCCTTCTTCCCCTTCCTCTTCCTCTTTCTGCTC
CAGCTCCTCCATAGCTCGCCTGCACTCTCCTCCTCCTCCTCTTCTTCTGCTAACGGCGGC
TTCGTCCTCCCCCTTCTCCACAAAACCTCTCTCCCTGCCCCTTACTCGCGCCATTCTTCC
CCTCTCGACTTTCTCGCTGAAGCGAAATCGCTCGACGAAGCTCGCCGCGCCGCCATCGCC
TCATCGCTGAGCAGGGGACGAAACTCTTCACCTACATTGTCTCGCTTTTCTGCTCCTTTC
GACGCCATTGCGGCAAGCAACGCGAGAGATGGCTTCAGAACAGGGGTGAGGTCCGGAGCC
TCGGAAGGGGCAGGGCAGTATTTTGTGCAGCTCGCCATTGGTACTCCGCCGCAGCAATTC
CTTCTTA
■■Homology search results ■■ -
sp_hit_id Q5XHH7
Definition sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin-B OS=Xenopus laevis
Align length 25
Score (bit) 30.8
E-value 6.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK963585|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_O22, 5'
(667 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin-B O... 31 6.8
sp|Q9DBC0|SELO_MOUSE Selenoprotein O OS=Mus musculus GN=Selo PE=... 30 8.8
sp|Q2NSZ8|RNFD_SODGM Electron transport complex protein rnfD OS=... 30 8.9

>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin-B
OS=Xenopus laevis GN=syvn1-B PE=2 SV=1
Length = 595

Score = 30.8 bits (68), Expect = 6.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1

Query: 106 RRPTRPTCSFSFVRASLPCAPHSPA 180
R+ T PTC +RASLP P +PA
Sbjct: 316 RQQTCPTCRMDVLRASLPTQPQTPA 340


>sp|Q9DBC0|SELO_MOUSE Selenoprotein O OS=Mus musculus GN=Selo PE=1
SV=3
Length = 667

Score = 30.4 bits (67), Expect = 8.8
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = -3

Query: 644 VPMASCTKYCPAPSEAPDLTPVLKPSLALLAAMASKGAE 528
VP A ++ PAP P L + +P+LALL AS+ AE
Sbjct: 78 VPGACFSRARPAPLRRPRLVALSEPALALLGLEASEEAE 116


>sp|Q2NSZ8|RNFD_SODGM Electron transport complex protein rnfD
OS=Sodalis glossinidius (strain morsitans) GN=rnfD PE=3
SV=1
Length = 346

Score = 30.4 bits (67), Expect = 8.9
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1

Query: 514 TLSRFSAPFDAIAASNARDGFRTGVRSGA 600
TL++ A D I + DGF+TG+R+GA
Sbjct: 172 TLTQLRATVDGITQATPLDGFKTGLRTGA 200


tr_hit_id A7P326
Definition tr|A7P326|A7P326_VITVI Chromosome chr1 scaffold_5, whole genome shotgun sequence OS=Vitis vinifera
Align length 39
Score (bit) 43.1
E-value 0.016
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK963585|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_O22, 5'
(667 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7P326|A7P326_VITVI Chromosome chr1 scaffold_5, whole genome ... 43 0.016
tr|A9RCN7|A9RCN7_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.045
tr|Q9LI73|Q9LI73_ARATH Chloroplast nucleoid DNA binding protein-... 41 0.059
tr|A9TM24|A9TM24_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.22
tr|Q5QM89|Q5QM89_ORYSJ Putative uncharacterized protein B1144G04... 39 0.29
tr|Q0JKE8|Q0JKE8_ORYSJ Os01g0679500 protein OS=Oryza sativa subs... 39 0.29
tr|A5AKV9|A5AKV9_VITVI Putative uncharacterized protein (Chromos... 39 0.29
tr|A2WTS5|A2WTS5_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.29
tr|A9S045|A9S045_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.38
tr|Q0DG23|Q0DG23_ORYSJ Os05g0557100 protein OS=Oryza sativa subs... 38 0.50
tr|A2Y7B7|A2Y7B7_ORYSI Putative uncharacterized protein OS=Oryza... 38 0.50
tr|A9RSN4|A9RSN4_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.85
tr|A7QNM3|A7QNM3_VITVI Chromosome undetermined scaffold_133, who... 37 0.85
tr|Q9LNJ3|Q9LNJ3_ARATH F6F3.10 protein (At1g01300) (Chloroplast ... 36 1.9
tr|Q8L9B9|Q8L9B9_ARATH Chloroplast nucleoid DNA binding protein,... 36 1.9
tr|B4FDJ8|B4FDJ8_MAIZE Putative uncharacterized protein OS=Zea m... 36 1.9
tr|A9RYP4|A9RYP4_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.9
tr|A9NV06|A9NV06_PICSI Putative uncharacterized protein OS=Picea... 36 1.9
tr|B4D8C8|B4D8C8_9BACT Putative uncharacterized protein OS=Chtho... 36 2.5
tr|Q9M356|Q9M356_ARATH Putative uncharacterized protein F15G16.2... 35 3.2
tr|Q94BT8|Q94BT8_ARATH AT3g61820/F15G16_210 OS=Arabidopsis thali... 35 3.2
tr|A9PCK2|A9PCK2_POPTR Putative uncharacterized protein OS=Popul... 35 3.2
tr|A7PGQ3|A7PGQ3_VITVI Chromosome chr17 scaffold_16, whole genom... 35 3.2
tr|Q4TEX8|Q4TEX8_TETNG Chromosome undetermined SCAF5014, whole g... 35 4.2
tr|Q9LS40|Q9LS40_ARATH CND41, chloroplast nucleoid DNA binding p... 35 4.2
tr|Q94D20|Q94D20_ORYSJ Nucleoid DNA-binding protein cnd41-like (... 35 4.2
tr|A7PJT8|A7PJT8_VITVI Chromosome chr12 scaffold_18, whole genom... 35 4.2
tr|A2ZV28|A2ZV28_ORYSJ Putative uncharacterized protein OS=Oryza... 35 4.2
tr|A2WS70|A2WS70_ORYSI Putative uncharacterized protein OS=Oryza... 35 4.2
tr|Q6L558|Q6L558_ORYSJ Unknow protein OS=Oryza sativa subsp. jap... 35 5.5

>tr|A7P326|A7P326_VITVI Chromosome chr1 scaffold_5, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00030279001
PE=4 SV=1
Length = 458

Score = 43.1 bits (100), Expect = 0.016
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +1

Query: 550 AASNARDGFRTGVRSGASEGAGQYFVQLAIGTPPQQFLL 666
+A + ++ V SGAS G+GQYFV L +GTPPQ+ LL
Sbjct: 66 SALHTPQSLKSPVVSGASTGSGQYFVDLRLGTPPQKLLL 104


>tr|A9RCN7|A9RCN7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_201465 PE=4 SV=1
Length = 418

Score = 41.6 bits (96), Expect = 0.045
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = +1

Query: 571 GFRTGVRSGASEGAGQYFVQLAIGTPPQQFLL 666
GF++ V SG++ G+GQYFV +GTPPQ+F L
Sbjct: 48 GFQSPVVSGSTLGSGQYFVDFFLGTPPQKFSL 79


>tr|Q9LI73|Q9LI73_ARATH Chloroplast nucleoid DNA binding
protein-like; nucellin-like protein (At3g25700)
OS=Arabidopsis thaliana GN=At3g25700 PE=2 SV=1
Length = 452

Score = 41.2 bits (95), Expect = 0.059
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Frame = +1

Query: 520 SRFSAPFDAIAASNARDGF-----------RTGVRSGASEGAGQYFVQLAIGTPPQQFLL 666
S F +P A+A R F ++ V SGA+ G+GQYFV L IG PPQ LL
Sbjct: 40 SPFPSPTQALALDTRRLHFLSLRRKPIPFVKSPVVSGAASGSGQYFVDLRIGQPPQSLLL 99


>tr|A9TM24|A9TM24_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_196312 PE=4 SV=1
Length = 419

Score = 39.3 bits (90), Expect = 0.22
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +1

Query: 574 FRTGVRSGASEGAGQYFVQLAIGTPPQQFLL 666
F++ V SG++ G+GQYFV +GTPPQ+F L
Sbjct: 50 FQSPVVSGSTLGSGQYFVDFFLGTPPQKFSL 80


>tr|Q5QM89|Q5QM89_ORYSJ Putative uncharacterized protein B1144G04.37
OS=Oryza sativa subsp. japonica GN=B1144G04.37 PE=4 SV=1
Length = 216

Score = 38.9 bits (89), Expect = 0.29
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1

Query: 553 ASNARDGFRTGVRSGASEGAGQYFVQLAIGTPPQQFLL 666
A+ F + SGA G GQYFV+ +GTP Q FLL
Sbjct: 65 AAETASAFAMPLSSGAYTGTGQYFVRFRVGTPAQPFLL 102


>tr|Q0JKE8|Q0JKE8_ORYSJ Os01g0679500 protein OS=Oryza sativa subsp.
japonica GN=Os01g0679500 PE=4 SV=1
Length = 484

Score = 38.9 bits (89), Expect = 0.29
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1

Query: 553 ASNARDGFRTGVRSGASEGAGQYFVQLAIGTPPQQFLL 666
A+ F + SGA G GQYFV+ +GTP Q FLL
Sbjct: 65 AAETASAFAMPLSSGAYTGTGQYFVRFRVGTPAQPFLL 102


>tr|A5AKV9|A5AKV9_VITVI Putative uncharacterized protein (Chromosome
undetermined scaffold_203, whole genome shotgun
sequence) OS=Vitis vinifera GN=GSVIVT00008623001 PE=4
SV=1
Length = 489

Score = 38.9 bits (89), Expect = 0.29
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +1

Query: 571 GFRTGVRSGASEGAGQYFVQLAIGTPPQ 654
GF + V SG ++G+G+YF +L +GTPP+
Sbjct: 131 GFSSSVTSGLAQGSGEYFTRLGVGTPPK 158


>tr|A2WTS5|A2WTS5_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_03267 PE=4 SV=1
Length = 484

Score = 38.9 bits (89), Expect = 0.29
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1

Query: 553 ASNARDGFRTGVRSGASEGAGQYFVQLAIGTPPQQFLL 666
A+ F + SGA G GQYFV+ +GTP Q FLL
Sbjct: 65 AAETASAFAMPLSSGAYTGTGQYFVRFRVGTPAQPFLL 102


>tr|A9S045|A9S045_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_121919 PE=4 SV=1
Length = 392

Score = 38.5 bits (88), Expect = 0.38
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +1

Query: 574 FRTGVRSGASEGAGQYFVQLAIGTPPQQFLL 666
FRT + SG + G+GQYFV ++GTP Q+F L
Sbjct: 19 FRTPLVSGTTLGSGQYFVDFSLGTPEQKFHL 49


>tr|Q0DG23|Q0DG23_ORYSJ Os05g0557100 protein OS=Oryza sativa subsp.
japonica GN=Os05g0557100 PE=4 SV=1
Length = 494

Score = 38.1 bits (87), Expect = 0.50
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +1

Query: 550 AASNARDGFRTGVRSGASEGAGQYFVQLAIGTPPQQFLL 666
A + A F + SGA G GQYFV+ +GTP Q F+L
Sbjct: 87 AGAVAASAFAMPLSSGAYTGTGQYFVRFRVGTPAQPFVL 125