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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963367
Clone id TST39A01NGRL0016_F15
Library
Length 702
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0016_F15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CATAAACATGGGGTCCCACTAGAGCCATGGACCGCGCTCAAGATGCGTACAAGAAATTCA
AGCTTCCAGATGATCAATATCTAAGCATGGCGTTTTGGCATGGAAAGTTTTTGAGCCCTT
GTGTATTCTTCTATATTGTCCATTTGAAGACACTTATCTCCACTTTATGCAGAAGGTCAT
GTGGCAAGTCTATCAAGTGGATTTCTGGTCTTGAAGGCATCTGTGGCCCTCCCTAAAGTT
GGTATGCATTTGAGTGCACCTTGTCTTAAGTACACATTAAAAGAATGCTGGGTTCCTACC
TCTTAGGACAGGATTCGAAGACCACTTCGATTTTGGAAAGCTCCCAATGCTGCAATGTAA
GAGCCTCATTGCTAGCCTTTCGACCTTTGCAGCTCTACCTTGTTTGTGTAAATGATATGA
GAGTTAACCACCTTTTCATCATGAAGATTATTAGCCACATCTGTGTCTCAGAATTTACAA
TCCCAGGGGAATTTTTCTGTAGATGAGCTTTTGCATGAGCATATGGTCTGCTCTAAGCAA
TTGTAATGAGCGGAGTCTTCGGGCGTAGTTCCAAACATGTAAATGGTCAAGTTGTAACCC
TGTGGTTGGGAAACATGATACTGGATGTGAAGGGATTTTTTATTAAATTCGGTCCAACTT
AAGTTGGCTCTTGTTTTTCTCAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q86SQ3
Definition sp|Q86SQ3|EMR4_HUMAN Putative EGF-like module-containing mucin-like hormone receptor-like 4 OS=Homo sapiens
Align length 109
Score (bit) 32.3
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963367|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_F15, 5'
         (681 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q86SQ3|EMR4_HUMAN Putative EGF-like module-containing mucin-l...    32   2.4  

>sp|Q86SQ3|EMR4_HUMAN Putative EGF-like module-containing mucin-like
           hormone receptor-like 4 OS=Homo sapiens GN=EMR4P PE=5
           SV=1
          Length = 457

 Score = 32.3 bits (72), Expect = 2.4
 Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
 Frame = +3

Query: 336 ESSQCCNVRASLLAFRPLQLYLVCVNDMRVNHLFIMKIISHICVSEFTIPGEFFCR*AFA 515
           E    C++ A LL F    LYL C   M +  L +   + ++ V+ +T  G F  R  + 
Sbjct: 248 EPEVLCSIIAGLLHF----LYLACFTWMLLEGLHLFLTVRNLKVANYTSTGRFKKRFMYP 303

Query: 516 *AYGLL*AIV-MSGVFGRSSKHVNGQVVTLWLGNMILDVKGFFIKF-GP 656
             YG+   I+ +S + G      N    T WL    LD KGF   F GP
Sbjct: 304 VGYGIPAVIIAVSAIVGPQ----NYGTFTCWLK---LD-KGFIWSFMGP 344
tr_hit_id A0EAT8
Definition tr|A0EAT8|A0EAT8_PARTE Chromosome undetermined scaffold_87, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 84
Score (bit) 37.4
E-value 0.89
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963367|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0016_F15, 5'
         (681 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0EAT8|A0EAT8_PARTE Chromosome undetermined scaffold_87, whol...    37   0.89 
tr|A7FYZ2|A7FYZ2_CLOB1 Alanine racemase OS=Clostridium botulinum...    34   7.5  
tr|A5I7C2|A5I7C2_CLOBH Alanine racemase OS=Clostridium botulinum...    34   7.5  

>tr|A0EAT8|A0EAT8_PARTE Chromosome undetermined scaffold_87, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00025139001 PE=4 SV=1
          Length = 2915

 Score = 37.4 bits (85), Expect = 0.89
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
 Frame = -2

Query: 653 TEFNKKSLHIQYHVSQPQGYNLTIYMFGTTPEDSAHYNCLEQTICSCKSSSTEKFPWDCK 474
           + F KKS  +Q  +   Q Y  T+  F    E+  +YNC+ +      S   E FP DC 
Sbjct: 25  SRFEKKSEVLQKPLGIYQAYIKTLLGFELEQEEDFNYNCILKNFKKDLSEDIEIFP-DCV 83

Query: 473 F----*DTDVANNLHDEKVVNSHI 414
           F     D    N  HD+ +VNS I
Sbjct: 84  FSLINPDYKYKNENHDQCMVNSSI 107


>tr|A7FYZ2|A7FYZ2_CLOB1 Alanine racemase OS=Clostridium botulinum
           (strain ATCC 19397 / Type A) GN=alr-3 PE=3 SV=1
          Length = 386

 Score = 34.3 bits (77), Expect = 7.5
 Identities = 24/93 (25%), Positives = 41/93 (44%)
 Frame = +2

Query: 107 VFEPLCILLYCPFEDTYLHFMQKVMWQVYQVDFWS*RHLWPSLKLVCI*VHLVLSTH*KN 286
           V EP+ IL Y P+    +     +   VY  +          LK   + +H+V+ T    
Sbjct: 77  VKEPIMILGYTPWALGDMLLDNDIEQSVYSYNDALELSKIAVLKRKILKIHIVVDTGMGR 136

Query: 287 AGFLPLRTGFEDHFDFGKLPMLQCKSLIASLST 385
            GFLP +   ED +   KLP ++ + + +  S+
Sbjct: 137 IGFLPTKESVEDVYKISKLPNIEIEGIFSHFSS 169


>tr|A5I7C2|A5I7C2_CLOBH Alanine racemase OS=Clostridium botulinum
           (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=alr
           PE=3 SV=1
          Length = 386

 Score = 34.3 bits (77), Expect = 7.5
 Identities = 24/93 (25%), Positives = 41/93 (44%)
 Frame = +2

Query: 107 VFEPLCILLYCPFEDTYLHFMQKVMWQVYQVDFWS*RHLWPSLKLVCI*VHLVLSTH*KN 286
           V EP+ IL Y P+    +     +   VY  +          LK   + +H+V+ T    
Sbjct: 77  VKEPIMILGYTPWALGDMLLDNDIEQSVYSYNDALELSKIAVLKRKILKIHIVVDTGMGR 136

Query: 287 AGFLPLRTGFEDHFDFGKLPMLQCKSLIASLST 385
            GFLP +   ED +   KLP ++ + + +  S+
Sbjct: 137 IGFLPTKESVEDVYKISKLPNIEIEGIFSHFSS 169