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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963222
Clone id TST39A01NGRL0015_P07
Library
Length 644
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_P07. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
TAATCATGTCATCATCATGAGCGCCTGCACAAAGAGATGCAGTCAATGCTGCTCGGGAGG
GGAAATGACCGGCCCATACATGGGCGCAGCAGTACCCTCTTCCTCAATGCTGGCCATAAT
TAGATACGTCCTCTTCTTTGCATGTGCAGACACACAATTCTTTATTTTTTGTTTTAAAGC
GTGATTCTCACATTTCATCATCAGAAAGTGCTACTTTGAATGTGCTAATTTCTGATCTGC
TCCATTTGCTACTTTCTGATTTGCTCTTGGATTTTCTGATTCGTTCTTTCTTTGAAATTT
TAGGTGGTAGCAGGACAATTTGAGGAATTGCGTTTGAGGCAATGCGAGGAAGCATGCTTA
ATTGGGCTGCATGGGATAGGTGGATTAGGAAAGACGACCGTGTGCAAAATCATGACGAAC
TTTTACAGTGCAGAGTATCCTGGGCGATGCCACCACCTCGAGTTTCCGACCGATGGTAAC
GACATGCCGCAGATCGTGCAAGGGTGCAAGAAGGCTCTCAAGGAACTCACCCATTTGAGC
GATGAACTCCTTTTAAATAAAGTAGACAAATTTGACCAGGTCATTCAACTGATGAAGGAA
CATTTCAGCCAGCTTGATGTGTTTCTCGCTATTGACAATGTGTG
■■Homology search results ■■ -
sp_hit_id P81919
Definition sp|P81919|OR46A_DROME Odorant receptor 46a, isoform A OS=Drosophila melanogaster
Align length 44
Score (bit) 32.0
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963222|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_P07, 5'
         (644 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P81919|OR46A_DROME Odorant receptor 46a, isoform A OS=Drosoph...    32   2.8  
sp|Q5MJ68|SPDYC_HUMAN Speedy protein C OS=Homo sapiens GN=SPDYC ...    30   8.2  
sp|P31373|CYS3_YEAST Cystathionine gamma-lyase OS=Saccharomyces ...    30   8.2  

>sp|P81919|OR46A_DROME Odorant receptor 46a, isoform A OS=Drosophila
           melanogaster GN=Or46a PE=2 SV=4
          Length = 381

 Score = 32.0 bits (71), Expect = 2.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 50  CSGGEMTGPYMGAAVPSSSMLAIIRYVLFFACADTQFFIFCFKA 181
           CS   +T  +   AV S   L + +YV + AC   Q FI C+ A
Sbjct: 262 CSVLVLTANFYAIAVLSDERLELFKYVTYQACMLIQIFILCYYA 305


>sp|Q5MJ68|SPDYC_HUMAN Speedy protein C OS=Homo sapiens GN=SPDYC
           PE=1 SV=1
          Length = 293

 Score = 30.4 bits (67), Expect = 8.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 374 PCSPIKHASSHCLKRNSSNCPATT 303
           PC   +H SSH LK  SS CP+ T
Sbjct: 218 PCGLPQHCSSHLLKPVSSKCPSLT 241


>sp|P31373|CYS3_YEAST Cystathionine gamma-lyase OS=Saccharomyces
           cerevisiae GN=CYS3 PE=1 SV=2
          Length = 394

 Score = 30.4 bits (67), Expect = 8.2
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +1

Query: 478 NDMPQIVQGCKKALKELTHLSDELLLNKVDKFDQVIQLMKEHFSQLDVFLAIDN 639
           ND+PQ+++   K +   T  +  L   KV    +V  L+K+H +  DV L +DN
Sbjct: 130 NDLPQLIKENTKLVWIETPTNPTL---KVTDIQKVADLIKKHAAGQDVILVVDN 180
tr_hit_id A9RG57
Definition tr|A9RG57|A9RG57_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 84
Score (bit) 46.6
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963222|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_P07, 5'
         (644 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RG57|A9RG57_PHYPA Predicted protein OS=Physcomitrella paten...    47   0.001
tr|A9SQC0|A9SQC0_PHYPA Predicted protein OS=Physcomitrella paten...    35   3.9  
tr|A7RL36|A7RL36_NEMVE Predicted protein OS=Nematostella vectens...    35   5.1  
tr|B6MUA9|B6MUA9_BRAFL Putative uncharacterized protein OS=Branc...    34   6.7  
tr|Q6T1H0|Q6T1H0_LATME RAG1 (Fragment) OS=Latimeria menadoensis ...    34   8.8  
tr|Q7S2K9|Q7S2K9_NEUCR Predicted protein OS=Neurospora crassa GN...    34   8.8  

>tr|A9RG57|A9RG57_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_65683 PE=4 SV=1
          Length = 983

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 29/84 (34%), Positives = 42/84 (50%)
 Frame = +1

Query: 391 KTTVCKIMTNFYSAEYPGRCHHLEFPTDGNDMPQIVQGCKKALKELTHLSDELLLNKVDK 570
           KTT+CK M N++   + GR  HLE  +    +       K+ LK L  L D+ +L  V  
Sbjct: 264 KTTICKGMCNYFHGHFFGRVFHLELVSGRKQLDL----QKQMLKTLFRLGDD-ILQTVAS 318

Query: 571 FDQVIQLMKEHFSQLDVFLAIDNV 642
            D+V+  + +H     V L IDNV
Sbjct: 319 SDEVVTCLNKHAGTHPVLLIIDNV 342


>tr|A9SQC0|A9SQC0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166149 PE=4 SV=1
          Length = 1269

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 24/84 (28%), Positives = 36/84 (42%)
 Frame = +1

Query: 391 KTTVCKIMTNFYSAEYPGRCHHLEFPTDGNDMPQIVQGCKKALKELTHLSDELLLNKVDK 570
           ++ +CK + N +  +Y GR  H E      +     +  K+ L+ LT    ELL      
Sbjct: 290 RSRLCKALCNEFFKKYRGRVSHAELERGSEE-----ELLKEVLRRLTDTKPELL--DAMN 342

Query: 571 FDQVIQLMKEHFSQLDVFLAIDNV 642
            D+    +      L VFL IDNV
Sbjct: 343 VDEYRHRLNRDMRNLGVFLTIDNV 366


>tr|A7RL36|A7RL36_NEMVE Predicted protein OS=Nematostella vectensis
            GN=v1g198679 PE=4 SV=1
          Length = 2279

 Score = 34.7 bits (78), Expect = 5.1
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = -1

Query: 419  FVMILHTVVFPNPPIPCSPIKHASSHCLKRNSSNCPATT*NFKERTNQKIQEQIRK*QME 240
            FVM +H     NPP P   +  AS  C++  +  CP+     ++ ++  +  ++      
Sbjct: 1655 FVMKMHVQSKVNPPPPRECVLPASPRCIQEETGACPSIASTDRQESDALVTTEVNVQPSS 1714

Query: 239  QIRN*HIQSST 207
             ++N  I SST
Sbjct: 1715 AVKNKGIASST 1725


>tr|B6MUA9|B6MUA9_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_86808 PE=4 SV=1
          Length = 1333

 Score = 34.3 bits (77), Expect = 6.7
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
 Frame = -3

Query: 201 MMKCENHALKQ-----KIKNCVSAHAKKRTYLIMASIEEEGTAAPMYGPVISPPEQH 46
           M  CE+  +K+      + +C + +A K +  + A +EEEGT+ P    ++SP +QH
Sbjct: 45  MYICEDEEMKECCVDVGVMSCPAQNASKLSETLQAEVEEEGTSLPK-AALLSPDKQH 100


>tr|Q6T1H0|Q6T1H0_LATME RAG1 (Fragment) OS=Latimeria menadoensis
           GN=Rag1 PE=4 SV=1
          Length = 912

 Score = 33.9 bits (76), Expect = 8.8
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = -3

Query: 342 LPQTQFLKL-SCYHLKFQRKNESENPRANQKVANGADQKLAHSK*HFLMMKCENHALKQK 166
           LP + F K+    +   +RKN+ +NP+  +++  G  ++L + K   +  K + +AL +K
Sbjct: 125 LPHSLFCKICDTGNRAVKRKNQQQNPQFAKRLKIGNSKRLRNKK-QTVQSKSKKNALIKK 183

Query: 165 IKNCVSAH 142
           I NC   H
Sbjct: 184 IANCKKIH 191


>tr|Q7S2K9|Q7S2K9_NEUCR Predicted protein OS=Neurospora crassa
           GN=NCU09140 PE=4 SV=1
          Length = 631

 Score = 33.9 bits (76), Expect = 8.8
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -1

Query: 389 PNPPIPCSPIKHASSHCLKRNSSNCPATT*NFKERTNQKIQEQIRK 252
           P PP+PC+P+ H   H L   S     TT   K+ +N+K++ Q R+
Sbjct: 374 PPPPVPCTPMAHNPHHMLPNLSGMTLPTT--AKKLSNRKLKAQQRE 417