DK963218
Clone id TST39A01NGRL0015_P03
Library
Length 678
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_P03. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GGCGATCGCCATCTTTCTGTGTATACTTTTCTCTACCCCCGCCCCCTCCTCCTTGTACAG
CACAGATTATCGGCCCTCATCATGGCTCTGCTGCAAGCTGCCAACTCCATTTCCTGCACC
CACAAGCTCTCCCTTCCCGTACAACGCCCCGCCCACAGTAGGATTTGCTCTTCTCTCTCT
ACGCCCACCCTCAAGGGAGTGCCTCCTCCCTCTTTAAGGTTCGGATCCTCTTTTTTCAAT
GGCTCCAGCCTGCTGAAGGTGAAGAGAGAGATACAAGAGCTGAAGAGCGGCAGCAATTCG
AGTAAGGGGGGAGCTTGCACAGCAACCAGTTCTATCACTCTCTCGGGCGAGTTGCTGCGA
TGGATCTTTGCCGGCGCAGCGGCGGTGCTTATGTACCTCAAGAACACATCTATTAACAAG
AATATTCTGGTTCCATTGTTGGCATTGCAAGCTCCACGCGATGTTGTCACAGCGGTCCGG
GGTGAATATGGACTTTGGGCGGCGTTTCTAGCTCTATTGGTTAGGTTGTTTTACCAACTT
CCAGGGGAGCTCGAGCTACCGCTTGTGCTTGTGTTGCTATTGATCACCGCACCTCTTCAA
GTTTTGGACATCAGAAGGACAACGGCCGCGCTAGTGGTGAGTGCATGTGTGGCAGCATAC
CTAGTGTACCAACATGTG
■■Homology search results ■■ -
sp_hit_id Q6NYU2
Definition sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio
Align length 25
Score (bit) 29.6
E-value 3.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK963218|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_P03, 5'
(678 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain O... 30 3.8
sp|Q9QYX3|RNAS1_MUSPA Ribonuclease pancreatic OS=Mus pahari GN=R... 32 4.0
sp|Q8SQ05|RNAS1_LAGLA Ribonuclease pancreatic OS=Lagothrix lagot... 31 6.9
sp|Q9WUS3|RNAS1_LEOED Ribonuclease pancreatic OS=Leopoldamys edw... 30 9.0

>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain
OS=Danio rerio GN=helz PE=2 SV=1
Length = 1860

Score = 29.6 bits (65), Expect(2) = 3.8
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +3

Query: 75 PHHGSAASCQLHFLHPQALPSRTTP 149
PH SAAS Q H P LPS+ TP
Sbjct: 1767 PHPASAASLQHHGQFPPLLPSKQTP 1791



Score = 20.4 bits (41), Expect(2) = 3.8
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +2

Query: 149 PPTVGFALLSLRPPSRECLLP 211
PPT+ +A PP +LP
Sbjct: 1808 PPTMSYASALRAPPKPRPMLP 1828


>sp|Q9QYX3|RNAS1_MUSPA Ribonuclease pancreatic OS=Mus pahari
GN=Rnase1 PE=2 SV=1
Length = 149

Score = 31.6 bits (70), Expect = 4.0
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3

Query: 210 LFKVRILFFQWLQPAEGEERDTRAEERQQFE*GGSLHSNQFY 335
LF + +L W+QP+ G+E + ERQ + GS +++ Y
Sbjct: 9 LFPLFVLLLGWVQPSLGKESSAQKFERQHMDSSGSSNNSPTY 50


>sp|Q8SQ05|RNAS1_LAGLA Ribonuclease pancreatic OS=Lagothrix
lagotricha GN=RNASE1 PE=3 SV=1
Length = 156

Score = 30.8 bits (68), Expect = 6.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3

Query: 225 ILFFQWLQPAEGEERDTRAEERQQFE*GGSLHSNQFY 335
+L W+QP+ G+E + +RQ + GSL SN Y
Sbjct: 17 LLVLGWVQPSLGKESRAKKFQRQHMDSDGSLSSNPTY 53


>sp|Q9WUS3|RNAS1_LEOED Ribonuclease pancreatic OS=Leopoldamys
edwardsi GN=RNASE1 PE=2 SV=1
Length = 149

Score = 30.4 bits (67), Expect = 9.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3

Query: 210 LFKVRILFFQWLQPAEGEERDTRAEERQQFE*GGSLHSNQFY 335
LF + +L W+QP+ G+E + RQ + GS +S+ Y
Sbjct: 9 LFSLLVLVLGWVQPSLGKESSAQKFNRQHMDTEGSSNSSPTY 50


tr_hit_id B8LQ60
Definition tr|B8LQ60|B8LQ60_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 133
Score (bit) 117.0
E-value 9.0e-25
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK963218|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_P03, 5'
(678 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8LQ60|B8LQ60_PICSI Putative uncharacterized protein OS=Picea... 117 9e-25
tr|Q84LB5|Q84LB5_CRYJA Cold acclimation protein COR413-TM1 OS=Cr... 101 4e-20
tr|B6T8R2|B6T8R2_MAIZE Cold acclimation WCOR413-like protein gam... 100 1e-19
tr|Q688W8|Q688W8_ORYSJ Os05g0566800 protein OS=Oryza sativa subs... 93 2e-17
tr|Q84XU8|Q84XU8_ORYSJ Cold acclimation protein COR413-TM1 OS=Or... 92 2e-17
tr|B8AWS3|B8AWS3_ORYSI Putative uncharacterized protein OS=Oryza... 92 2e-17
tr|Q84XU9|Q84XU9_WHEAT Cold acclimation protein COR413-TM1 OS=Tr... 90 1e-16
tr|Q8W0V1|Q8W0V1_HORVD Cold acclimation WCOR413-like protein gam... 89 2e-16
tr|Q84LB3|Q84LB3_MAIZE Truncated cold acclimation protein COR413... 87 1e-15
tr|B7ZY82|B7ZY82_MAIZE Putative uncharacterized protein OS=Zea m... 87 1e-15
tr|A7QQJ9|A7QQJ9_VITVI Chromosome undetermined scaffold_143, who... 82 2e-14
tr|A3B6W4|A3B6W4_ORYSJ Putative uncharacterized protein OS=Oryza... 82 3e-14
tr|Q9C7R2|Q9C7R2_ARATH Putative uncharacterized protein F15D2.29... 80 2e-13
tr|Q8RXM0|Q8RXM0_ARATH Putative uncharacterized protein At1g2939... 80 2e-13
tr|Q8L813|Q8L813_ARATH Putative uncharacterized protein At1g2939... 78 5e-13
tr|Q94AL8|Q94AL8_ARATH Putative uncharacterized protein At1g2939... 77 8e-13
tr|A9RCW6|A9RCW6_PHYPA Predicted protein (Fragment) OS=Physcomit... 70 1e-10
tr|Q93WS4|Q93WS4_PHYPA Cold acclimation protein WCOR413-like pro... 59 3e-07
tr|A9S4D3|A9S4D3_PHYPA Predicted protein OS=Physcomitrella paten... 59 3e-07
tr|A9SZ92|A9SZ92_PHYPA Predicted protein OS=Physcomitrella paten... 56 2e-06
tr|A9S0S4|A9S0S4_PHYPA Predicted protein OS=Physcomitrella paten... 53 2e-05
tr|A9RWC5|A9RWC5_PHYPA Predicted protein OS=Physcomitrella paten... 52 3e-05
tr|B5TV68|B5TV68_CAMSI Cold acclimation protein WCOR413-like pro... 50 1e-04
tr|A9X4J8|A9X4J8_9MAGN Cold acclimation protein COR413-PM1 OS=Ch... 50 1e-04
tr|A9NT54|A9NT54_PICSI Putative uncharacterized protein OS=Picea... 50 2e-04
tr|P93613|P93613_WHEAT Cold acclimation protein WCOR413 OS=Triti... 48 7e-04
tr|Q6PQ36|Q6PQ36_9CARY Putative stress-responsive protein OS=Tam... 47 0.001
tr|A9PCB7|A9PCB7_POPTR Putative uncharacterized protein OS=Popul... 47 0.001
tr|Q9XIM7|Q9XIM7_ARATH Similar to cold acclimation protein WCOR4... 46 0.002
tr|Q9FUW4|Q9FUW4_ORYSJ Os03g0767800 protein OS=Oryza sativa subs... 46 0.002

>tr|B8LQ60|B8LQ60_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 245

Score = 117 bits (292), Expect = 9e-25
Identities = 62/133 (46%), Positives = 80/133 (60%)
Frame = +1

Query: 280 LKSGSNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPR 459
+ S + SS GGA + S+ LS E LRW+F AA VLM K+T+INK+ LVPLLAL+AP
Sbjct: 75 IHSIARSSYGGALSTECSVALSTEALRWLFGVAAVVLMLSKHTAINKSFLVPLLALEAPG 134

Query: 460 DVVTAVRGEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVV 639
DV + +RG+YGLW AFL LVRLFY ++R T A +V+
Sbjct: 135 DVFSWIRGDYGLWTAFLVFLVRLFYYIPGELELPFLFVLLVVIAPYQATNLRGTQAGMVI 194

Query: 640 SACVAAYLVYQHV 678
S +AYL+YQHV
Sbjct: 195 SMAASAYLIYQHV 207


>tr|Q84LB5|Q84LB5_CRYJA Cold acclimation protein COR413-TM1
OS=Cryptomeria japonica PE=2 SV=1
Length = 241

Score = 101 bits (252), Expect = 4e-20
Identities = 55/134 (41%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
Frame = +1

Query: 283 KSGSNSSKGGACT---ATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQA 453
K G +GG + A + S E LRW+FA ++ VLM+ K+T I K+ LVPLLALQA
Sbjct: 69 KLGGRGKRGGTSSIQCARVDLLYSTEALRWLFAVSSVVLMFSKHTVIRKSFLVPLLALQA 128

Query: 454 PRDVVTAVRGEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAAL 633
P DVV+ +RG+YGLW AF L+RLFY +R T A++
Sbjct: 129 PGDVVSWIRGDYGLWTAFSIFLIRLFYPIPGEMELPLLFVLLVIIAPSQASSMRGTQASM 188

Query: 634 VVSACVAAYLVYQH 675
V+S ++AYL +QH
Sbjct: 189 VISTAISAYLSFQH 202


>tr|B6T8R2|B6T8R2_MAIZE Cold acclimation WCOR413-like protein gamma
form OS=Zea mays PE=2 SV=1
Length = 226

Score = 100 bits (248), Expect = 1e-19
Identities = 52/125 (41%), Positives = 71/125 (56%)
Frame = +1

Query: 301 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 480
S+G A SS LS ++WI AGA+AVL+ K T+I+K+ LVP ALQAP +++ ++
Sbjct: 68 SRGAAAVCHSSAHLSARTIQWISAGASAVLLVAKGTAIHKSFLVPFFALQAPCSIISWIK 127

Query: 481 GEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVVSACVAAY 660
G+YG W AFLALLVRLF+ D+R T V+S +AAY
Sbjct: 128 GDYGQWTAFLALLVRLFFFIPGELELPLSTMLLVSVAPYQFMDLRGTQGGAVLSLAIAAY 187

Query: 661 LVYQH 675
L +QH
Sbjct: 188 LAFQH 192


>tr|Q688W8|Q688W8_ORYSJ Os05g0566800 protein OS=Oryza sativa subsp.
japonica GN=OJ1781_H11.9 PE=2 SV=1
Length = 222

Score = 92.8 bits (229), Expect = 2e-17
Identities = 48/128 (37%), Positives = 69/128 (53%)
Frame = +1

Query: 292 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVT 471
++ +GGA SS LS ++W+ AGA AVL+ K T+I+K+ LVPL AL AP V++
Sbjct: 61 ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPCSVIS 120

Query: 472 AVRGEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVVSACV 651
++ +YG W AFLALLVRLF+ ++R T +S +
Sbjct: 121 WIKSDYGQWTAFLALLVRLFFSIPGELELPLSTMLLVSVAPYQLMNLRGTQGGAALSLAL 180

Query: 652 AAYLVYQH 675
A YL +QH
Sbjct: 181 AGYLAFQH 188


>tr|Q84XU8|Q84XU8_ORYSJ Cold acclimation protein COR413-TM1 OS=Oryza
sativa subsp. japonica PE=2 SV=1
Length = 222

Score = 92.4 bits (228), Expect = 2e-17
Identities = 48/128 (37%), Positives = 69/128 (53%)
Frame = +1

Query: 292 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVT 471
++ +GGA SS LS ++W+ AGA AVL+ K T+I+K+ LVPL AL AP V++
Sbjct: 61 ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPSSVIS 120

Query: 472 AVRGEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVVSACV 651
++ +YG W AFLALLVRLF+ ++R T +S +
Sbjct: 121 WIKSDYGQWTAFLALLVRLFFCIPGELELPLSTMLLVSVAPYQLMNLRGTQGGAALSLAL 180

Query: 652 AAYLVYQH 675
A YL +QH
Sbjct: 181 AGYLAFQH 188


>tr|B8AWS3|B8AWS3_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_21013 PE=4 SV=1
Length = 222

Score = 92.4 bits (228), Expect = 2e-17
Identities = 48/128 (37%), Positives = 69/128 (53%)
Frame = +1

Query: 292 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVT 471
++ +GGA SS LS ++W+ AGA AVL+ K T+I+K+ LVPL AL AP V++
Sbjct: 61 ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPCSVIS 120

Query: 472 AVRGEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVVSACV 651
++ +YG W AFLALLVRLF+ ++R T +S +
Sbjct: 121 WIKSDYGHWTAFLALLVRLFFSIPGELELPLSTMLLVSVAPYQLMNLRGTQGGAALSLAL 180

Query: 652 AAYLVYQH 675
A YL +QH
Sbjct: 181 AGYLAFQH 188


>tr|Q84XU9|Q84XU9_WHEAT Cold acclimation protein COR413-TM1
OS=Triticum aestivum PE=2 SV=1
Length = 221

Score = 90.1 bits (222), Expect = 1e-16
Identities = 48/125 (38%), Positives = 65/125 (52%)
Frame = +1

Query: 301 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 480
S+G +S LS +W+ AAAVL+ K T I+K+ LVPL LQAP V++ ++
Sbjct: 63 SRGSGIVCNASAYLSPPTTQWVSVAAAAVLLLAKGTGIHKSFLVPLFVLQAPTAVISWIK 122

Query: 481 GEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVVSACVAAY 660
EYGLW AFLAL+VRLF ++R T +VS +AAY
Sbjct: 123 SEYGLWTAFLALVVRLFLPFPGELELPLSTMLAVSVAPYQVMNVRGTQGGAIVSLALAAY 182

Query: 661 LVYQH 675
L +QH
Sbjct: 183 LAFQH 187


>tr|Q8W0V1|Q8W0V1_HORVD Cold acclimation WCOR413-like protein gamma
form OS=Hordeum vulgare var. distichum PE=2 SV=1
Length = 215

Score = 89.4 bits (220), Expect = 2e-16
Identities = 48/125 (38%), Positives = 65/125 (52%)
Frame = +1

Query: 301 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 480
S+G ++S LS +W+ AAAVL+ K T I+K+ LVPL LQAP V++ ++
Sbjct: 57 SRGSGIVCSASAYLSPPTTQWVSVAAAAVLLLAKGTGIHKSFLVPLFVLQAPTAVISWIK 116

Query: 481 GEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVVSACVAAY 660
EYGLW AFLAL VRLF ++R T +VS +AAY
Sbjct: 117 SEYGLWTAFLALAVRLFLPFPGELELPLSTMLAVSVAPYQVMNVRGTQGGTIVSLVLAAY 176

Query: 661 LVYQH 675
L +QH
Sbjct: 177 LAFQH 181


>tr|Q84LB3|Q84LB3_MAIZE Truncated cold acclimation protein
COR413-TM1 OS=Zea mays PE=2 SV=1
Length = 177

Score = 87.0 bits (214), Expect = 1e-15
Identities = 41/78 (52%), Positives = 56/78 (71%)
Frame = +1

Query: 301 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 480
S+G A SS LS ++WI AGA+AVL+ K T+I+K+ LVP ALQAP +++ ++
Sbjct: 68 SRGAAAVCHSSAHLSARTIQWISAGASAVLLVAKGTAIHKSFLVPFFALQAPCSIISWIK 127

Query: 481 GEYGLWAAFLALLVRLFY 534
G+YG W AFLALLVRLF+
Sbjct: 128 GDYGQWTAFLALLVRLFF 145


>tr|B7ZY82|B7ZY82_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 177

Score = 87.0 bits (214), Expect = 1e-15
Identities = 41/78 (52%), Positives = 56/78 (71%)
Frame = +1

Query: 301 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 480
S+G A SS LS ++WI AGA+AVL+ K T+I+K+ LVP ALQAP +++ ++
Sbjct: 68 SRGAAAVCHSSAHLSARTIQWISAGASAVLLVAKGTAIHKSFLVPFFALQAPCSIISWIK 127

Query: 481 GEYGLWAAFLALLVRLFY 534
G+YG W AFLALLVRLF+
Sbjct: 128 GDYGQWTAFLALLVRLFF 145