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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963202
Clone id TST39A01NGRL0015_O10
Library
Length 597
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_O10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
AGCCCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCGC
CTCTGCTATTAGGGTTTTCAAGATTTTTCTGGCTTTCGCTTTCGATTTCCTGTTTCTAGA
GCTCCAGGGATCTGCAGGGCGCCCACGTTTCCTCTGTGTGCTTCCCCCTGCGTGCGAGCT
TTTTTTTCTCTGTTGCCTTAGACACTCACGATCCTTTCAGAAAGGCATCTTTGCTTGCAA
TCTGGAAGCCGATTCCGAGGGTTTTCTGCTCGTTTTTCCGCAGTAAATTCTAAGCTTTGC
TTGGCCTTCCTCAAAGATGGCACGGCGTTGTTCCCATTGTGGTCACAATGGGCATAATTC
AAGGACATGCTTGGACAATCAAGTAGGATTTAAGCTCTTTGGTGTTCGCCTCTCGACAGA
GTGTTGTATGGTATCCTCACCGGCGGGCACAGCCTCATAGTGTTCGTCTTCATCATTAAC
TGCTATGAGGAAGAGTGTGAGTATGGGAAATCTGTGCAATTATGGAGGTGCAGAGGGTGA
GGCGTCTCCCTTGTCTCCATCCCAGTTTGAGCAGCATGATGCAGGTGAACCTGTGGA
■■Homology search results ■■ -
sp_hit_id Q9Z7T1
Definition sp|Q9Z7T1|Y623_CHLPN Uncharacterized protein CPn_0623/CP_0124/CPj0623/CpB0649 OS=Chlamydia pneumoniae
Align length 55
Score (bit) 32.0
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963202|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_O10, 5'
         (597 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Z7T1|Y623_CHLPN Uncharacterized protein CPn_0623/CP_0124/CP...    32   2.4  
sp|Q9VGX3|FAU_DROME Protein anoxia up-regulated OS=Drosophila me...    32   2.4  
sp|Q5UQW2|DIPP_MIMIV Putative diphosphoinositol polyphosphate ph...    31   4.1  
sp|Q5HZA3|ZCH12_RAT Zinc finger CCHC domain-containing protein 1...    30   7.1  
sp|Q9CZA5|ZCH12_MOUSE Zinc finger CCHC domain-containing protein...    30   7.1  
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania maj...    30   7.1  
sp|Q6PEW1|ZCH12_HUMAN Zinc finger CCHC domain-containing protein...    30   9.2  
sp|Q08DL1|ZCH12_BOVIN Zinc finger CCHC domain-containing protein...    30   9.2  

>sp|Q9Z7T1|Y623_CHLPN Uncharacterized protein
           CPn_0623/CP_0124/CPj0623/CpB0649 OS=Chlamydia pneumoniae
           GN=CPn_0623 PE=3 SV=1
          Length = 277

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = -3

Query: 238 ASKDAFLKGS*VSKATEKKKLARRGKH---TEETWAPCRSLEL*KQEIESESQKN 83
           A KD+F KG    K  EKKKL+RR  H    E T A    L+  K+E+  ESQ+N
Sbjct: 134 ARKDSF-KGE---KWKEKKKLSRRRNHKEIAEVTGASQEILDTVKEELWEESQEN 184


>sp|Q9VGX3|FAU_DROME Protein anoxia up-regulated OS=Drosophila
           melanogaster GN=fau PE=1 SV=3
          Length = 619

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 12/163 (7%)
 Frame = -2

Query: 584 LHHAAQTGMETRETPHPLHLHNCTDFP---YSHSSS*QLMMKTNTMRLCPPVRIPYNTLS 414
           + + AQ+ +    TP      +CT FP   Y++  + QL +     R+  PVR     + 
Sbjct: 207 IRNRAQSLIRDLHTPVVRRARSCTPFPVTGYTYEPASQLALDAYVARVTNPVRHIAKEVH 266

Query: 413 RGEHQRA*ILLDCPSMSLNYAHCDHNGNNAVPSLRKAKQSLEFTAEKRAENPRNRLPDCK 234
              H         P  ++ Y   + + N         + S +F+A +  E+P +     K
Sbjct: 267 NISHY--------PRPAVKYVDAELDPN---------RPSRKFSAPRPLEDPLDVEAKEK 309

Query: 233 QRCLSERIVSV*GNRE---------KKARTQGEAHRGNVGALQ 132
           QR   ER+++V  N E         K+A+   EA R    AL+
Sbjct: 310 QRLRQERLLTV--NEEALDEVDLEKKRAQKADEAKRREERALK 350


>sp|Q5UQW2|DIPP_MIMIV Putative diphosphoinositol polyphosphate
           phosphohydrolase OS=Acanthamoeba polyphaga mimivirus
           GN=MIMI_L375 PE=3 SV=1
          Length = 360

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 329 CSHCGHNGHNSRTCLDNQVGFKLFGVRLSTE 421
           CS+CG +GH  R C++    + +  V +S E
Sbjct: 13  CSNCGRSGHEFRNCIEPITSYGIINVCISDE 43


>sp|Q5HZA3|ZCH12_RAT Zinc finger CCHC domain-containing protein 12
           OS=Rattus norvegicus GN=Zcchc12 PE=2 SV=1
          Length = 401

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 329 CSHCGHNGHNSRTCLDNQ 382
           CSHCG  GH+  TC DN+
Sbjct: 347 CSHCGEEGHSKETC-DNE 363


>sp|Q9CZA5|ZCH12_MOUSE Zinc finger CCHC domain-containing protein 12
           OS=Mus musculus GN=Zcchc12 PE=1 SV=1
          Length = 402

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 329 CSHCGHNGHNSRTCLDNQ 382
           CSHCG  GH+  TC DN+
Sbjct: 348 CSHCGEEGHSKETC-DNE 364


>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major
           GN=HEXBP PE=4 SV=1
          Length = 271

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 323 RRCSHCGHNGHNSRTCLDNQVGFKLFGVRLSTEC 424
           R C  CG  GH SR C + Q G+   G R   +C
Sbjct: 140 RTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKC 173



 Score = 30.0 bits (66), Expect = 9.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 323 RRCSHCGHNGHNSRTCLDNQVGFKLFGVRLSTEC 424
           R C  CG  GH SR C + Q G+   G R   +C
Sbjct: 168 RTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKC 201


>sp|Q6PEW1|ZCH12_HUMAN Zinc finger CCHC domain-containing protein 12
           OS=Homo sapiens GN=ZCCHC12 PE=2 SV=2
          Length = 402

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 326 RCSHCGHNGHNSRTCLDNQ 382
           RCS+CG  GH+  TC DN+
Sbjct: 346 RCSYCGEEGHSKETC-DNE 363


>sp|Q08DL1|ZCH12_BOVIN Zinc finger CCHC domain-containing protein 12
           OS=Bos taurus GN=ZCCHC12 PE=2 SV=1
          Length = 402

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 326 RCSHCGHNGHNSRTCLDNQ 382
           RCS+CG  GH+  TC DN+
Sbjct: 347 RCSYCGEEGHSKETC-DNE 364
tr_hit_id A9T9G5
Definition tr|A9T9G5|A9T9G5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 83
Score (bit) 69.3
E-value 2.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963202|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_O10, 5'
         (597 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T9G5|A9T9G5_PHYPA Predicted protein OS=Physcomitrella paten...    69   2e-10
tr|A9SEH9|A9SEH9_PHYPA Predicted protein OS=Physcomitrella paten...    69   2e-10
tr|Q9LVS0|Q9LVS0_ARATH Myb-related transcription activator-like ...    67   8e-10
tr|A9SL32|A9SL32_PHYPA Predicted protein OS=Physcomitrella paten...    67   1e-09
tr|A9SL31|A9SL31_PHYPA Predicted protein (Fragment) OS=Physcomit...    66   2e-09
tr|Q2A9N2|Q2A9N2_BRAOL Myb family transcription factor OS=Brassi...    65   4e-09
tr|B0ZRF3|B0ZRF3_PINEL MYB domain containing transcription facto...    65   4e-09
tr|B0ZRF2|B0ZRF2_PINSY MYB domain containing transcription facto...    65   4e-09
tr|B0ZRF0|B0ZRF0_PINRA MYB domain containing transcription facto...    65   4e-09
tr|B0ZRD6|B0ZRD6_PINTA MYB domain containing transcription facto...    65   4e-09
tr|B0ZRB8|B0ZRB8_PINTA MYB domain containing transcription facto...    65   4e-09
tr|Q0PJJ7|Q0PJJ7_SOYBN MYB transcription factor MYB180 OS=Glycin...    64   5e-09
tr|Q0PJJ8|Q0PJJ8_SOYBN MYB transcription factor MYB93 OS=Glycine...    64   7e-09
tr|Q2A9C4|Q2A9C4_BRAOL Myb family transcription factor OS=Brassi...    63   1e-08
tr|A9SCQ4|A9SCQ4_PHYPA Predicted protein OS=Physcomitrella paten...    63   1e-08
tr|A9SCQ6|A9SCQ6_PHYPA Predicted protein OS=Physcomitrella paten...    63   1e-08
tr|B8LRD4|B8LRD4_PICSI Putative uncharacterized protein OS=Picea...    62   2e-08
tr|Q9FKF9|Q9FKF9_ARATH Similarity to Myb-related transcription a...    62   3e-08
tr|Q2A9X4|Q2A9X4_BRAOL Myb transcription factor, putative OS=Bra...    61   4e-08
tr|A9NV60|A9NV60_PICSI Putative uncharacterized protein OS=Picea...    60   7e-08
tr|A7R361|A7R361_VITVI Chromosome undetermined scaffold_485, who...    60   9e-08
tr|A7R1J4|A7R1J4_VITVI Chromosome undetermined scaffold_359, who...    60   9e-08
tr|Q14SM5|Q14SM5_HORVU Transcription factor MybS3 (Mybst1 protei...    60   1e-07
tr|Q84U87|Q84U87_MAIZE ZmMybst1 OS=Zea mays PE=2 SV=1                  59   2e-07
tr|B6TCK0|B6TCK0_MAIZE ZmMybst1 OS=Zea mays PE=2 SV=1                  59   2e-07
tr|B4FU55|B4FU55_MAIZE Putative uncharacterized protein OS=Zea m...    59   2e-07
tr|A7PBQ1|A7PBQ1_VITVI Chromosome chr16 scaffold_10, whole genom...    59   2e-07
tr|Q9AUT3|Q9AUT3_ORYSA Putative Myb-related protein OS=Oryza sat...    59   3e-07
tr|Q8H1D0|Q8H1D0_ORYSJ Transcription factor MYBS3 OS=Oryza sativ...    59   3e-07
tr|Q7XC57|Q7XC57_ORYSJ Myb transcription factor OS=Oryza sativa ...    59   3e-07

>tr|A9T9G5|A9T9G5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_168779 PE=4 SV=1
          Length = 318

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 41/83 (49%), Positives = 45/83 (54%)
 Frame = +2

Query: 317 MARRCSHCGHNGHNSRTCLDNQVGFKLFGVRLSTECCMVXXXXXXXXXXXXXXLTAMRKS 496
           MAR CSHCGHNGHNSRTC D   G +LFGVRL+                       MRKS
Sbjct: 1   MARGCSHCGHNGHNSRTCPDR--GVRLFGVRLTD--------------------GVMRKS 38

Query: 497 VSMGNLCNYGGAEGEASPLSPSQ 565
           VSMGNL +Y G     SP S S+
Sbjct: 39  VSMGNLSHYIGPNNPPSPPSHSE 61


>tr|A9SEH9|A9SEH9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_78294 PE=4 SV=1
          Length = 317

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 40/83 (48%), Positives = 45/83 (54%)
 Frame = +2

Query: 317 MARRCSHCGHNGHNSRTCLDNQVGFKLFGVRLSTECCMVXXXXXXXXXXXXXXLTAMRKS 496
           MAR CSHCGHNGHNSRTC D   G +LFGVRL+                       MRKS
Sbjct: 1   MARGCSHCGHNGHNSRTCPDR--GVRLFGVRLTD--------------------GVMRKS 38

Query: 497 VSMGNLCNYGGAEGEASPLSPSQ 565
           VSMGNL +Y      +SP S S+
Sbjct: 39  VSMGNLSHYASPNNPSSPPSHSE 61


>tr|Q9LVS0|Q9LVS0_ARATH Myb-related transcription activator-like
           (MYB transcription factor) OS=Arabidopsis thaliana
           GN=At5g47390 PE=2 SV=1
          Length = 365

 Score = 67.0 bits (162), Expect = 8e-10
 Identities = 41/97 (42%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
 Frame = +2

Query: 317 MARRCSHCGHNGHNSRTCLDNQVGFKLFGVRLSTECCMVXXXXXXXXXXXXXXLTAMRKS 496
           M RRCSHC HNGHNSRTC +   G KLFGVRL+                      ++RKS
Sbjct: 1   MTRRCSHCNHNGHNSRTCPNR--GVKLFGVRLTE--------------------GSIRKS 38

Query: 497 VSMGNLCNYGGA------EGEASPLSPSQFEQHDAGE 589
            SMGNL +Y G+       G  +P SP     H AG+
Sbjct: 39  ASMGNLSHYTGSGSGGHGTGSNTPGSPGDVPDHVAGD 75


>tr|A9SL32|A9SL32_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_131614 PE=4 SV=1
          Length = 187

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 40/85 (47%), Positives = 46/85 (54%)
 Frame = +2

Query: 317 MARRCSHCGHNGHNSRTCLDNQVGFKLFGVRLSTECCMVXXXXXXXXXXXXXXLTAMRKS 496
           M+RRCSHCG NGHNSRTC +   G +LFGVRL+                     T MRKS
Sbjct: 1   MSRRCSHCGLNGHNSRTCPER--GVRLFGVRLTDSVSS----------------TNMRKS 42

Query: 497 VSMGNLCNYGGAEGEASPLSPSQFE 571
           VSM NL +Y      ASP  P Q+E
Sbjct: 43  VSMNNLSHYSNVHNPASP--PEQWE 65


>tr|A9SL31|A9SL31_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_17324 PE=4 SV=1
          Length = 156

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 40/85 (47%), Positives = 46/85 (54%)
 Frame = +2

Query: 317 MARRCSHCGHNGHNSRTCLDNQVGFKLFGVRLSTECCMVXXXXXXXXXXXXXXLTAMRKS 496
           M+RRCSHCG NGHNSRTC +   G +LFGVRL+                     T MRKS
Sbjct: 1   MSRRCSHCGLNGHNSRTCPER--GVRLFGVRLT----------------DGVSSTNMRKS 42

Query: 497 VSMGNLCNYGGAEGEASPLSPSQFE 571
           VSM NL +Y      ASP  P Q+E
Sbjct: 43  VSMNNLSHYSNVHNPASP--PEQWE 65


>tr|Q2A9N2|Q2A9N2_BRAOL Myb family transcription factor OS=Brassica
           oleracea GN=26.t00038 PE=4 SV=1
          Length = 351

 Score = 64.7 bits (156), Expect = 4e-09
 Identities = 40/91 (43%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
 Frame = +2

Query: 317 MARRCSHCGHNGHNSRTCLDNQVGFKLFGVRLSTECCMVXXXXXXXXXXXXXXLTAMRKS 496
           M RRCSHC HNGHNSRTC +   G KLFGVRL+                      ++RKS
Sbjct: 1   MTRRCSHCNHNGHNSRTCPNR--GVKLFGVRLTE--------------------GSIRKS 38

Query: 497 VSMGNLCNY-GGAEGEASPLSPSQFEQHDAG 586
            SMGNL +Y G   G     SP     H AG
Sbjct: 39  ASMGNLSHYTGSGSGGHGSGSPGDVPDHVAG 69


>tr|B0ZRF3|B0ZRF3_PINEL MYB domain containing transcription factor
           (Fragment) OS=Pinus elliottii GN=myb2 PE=4 SV=1
          Length = 50

 Score = 64.7 bits (156), Expect = 4e-09
 Identities = 36/66 (54%), Positives = 39/66 (59%)
 Frame = +2

Query: 317 MARRCSHCGHNGHNSRTCLDNQVGFKLFGVRLSTECCMVXXXXXXXXXXXXXXLTAMRKS 496
           M RRCSHCGHNGHNSRTC D   G KLFGVRL+T+                     MRKS
Sbjct: 1   MNRRCSHCGHNGHNSRTCPDR--GVKLFGVRLTTD-------------------EPMRKS 39

Query: 497 VSMGNL 514
           +SMGNL
Sbjct: 40  LSMGNL 45


>tr|B0ZRF2|B0ZRF2_PINSY MYB domain containing transcription factor
           (Fragment) OS=Pinus sylvestris GN=myb2 PE=4 SV=1
          Length = 50

 Score = 64.7 bits (156), Expect = 4e-09
 Identities = 36/66 (54%), Positives = 39/66 (59%)
 Frame = +2

Query: 317 MARRCSHCGHNGHNSRTCLDNQVGFKLFGVRLSTECCMVXXXXXXXXXXXXXXLTAMRKS 496
           M RRCSHCGHNGHNSRTC D   G KLFGVRL+T+                     MRKS
Sbjct: 1   MNRRCSHCGHNGHNSRTCPDR--GVKLFGVRLTTD-------------------EPMRKS 39

Query: 497 VSMGNL 514
           +SMGNL
Sbjct: 40  LSMGNL 45


>tr|B0ZRF0|B0ZRF0_PINRA MYB domain containing transcription factor
           (Fragment) OS=Pinus radiata GN=myb2 PE=4 SV=1
          Length = 50

 Score = 64.7 bits (156), Expect = 4e-09
 Identities = 36/66 (54%), Positives = 39/66 (59%)
 Frame = +2

Query: 317 MARRCSHCGHNGHNSRTCLDNQVGFKLFGVRLSTECCMVXXXXXXXXXXXXXXLTAMRKS 496
           M RRCSHCGHNGHNSRTC D   G KLFGVRL+T+                     MRKS
Sbjct: 1   MNRRCSHCGHNGHNSRTCPDR--GVKLFGVRLTTD-------------------EPMRKS 39

Query: 497 VSMGNL 514
           +SMGNL
Sbjct: 40  LSMGNL 45


>tr|B0ZRD6|B0ZRD6_PINTA MYB domain containing transcription factor
           (Fragment) OS=Pinus taeda GN=myb2 PE=4 SV=1
          Length = 50

 Score = 64.7 bits (156), Expect = 4e-09
 Identities = 36/66 (54%), Positives = 39/66 (59%)
 Frame = +2

Query: 317 MARRCSHCGHNGHNSRTCLDNQVGFKLFGVRLSTECCMVXXXXXXXXXXXXXXLTAMRKS 496
           M RRCSHCGHNGHNSRTC D   G KLFGVRL+T+                     MRKS
Sbjct: 1   MNRRCSHCGHNGHNSRTCPDR--GVKLFGVRLTTD-------------------EPMRKS 39

Query: 497 VSMGNL 514
           +SMGNL
Sbjct: 40  LSMGNL 45