DK963198
Clone id TST39A01NGRL0015_O06
Library
Length 684
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_O06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CGGGCATCATCATGAACCCCTCTCTACAAAAGGGCAGCCTTTCCATCATCTCTTTCTCCG
AGGCTCGAGCTAGCTGTTTTTGCCGAAAAAGAACTTGCACAGACACCCACACCACGCGCC
TTACTTCCCCAGGTCCCCTCCCTCCTACCGCCCTCCCACCTCAACAGTCACAGACACTGT
CGCAACACGCGCATATATACATGATACATACACACATAAACCTCTTTTGTCCCCTTCAGT
CCTGCTTTACCATCATCATCTCCTCTCCCCTCTCAGTCTCCTCTTTCGCCCCTTTGTGTC
CCCCTCCTCCAATCCTAGCATTTAAGGGTCATTCTGATCGTCACCGCCTTGCAATATTAA
GCGTCTTTGCAGCCGAGTTCTAGATCCGCATCCGTCCTTCTGGAGCTCGCCATAAAAACT
CCAGCTTTTGATTTGTAATCCTCCTTTTAGGGCCGTGGTTCATGCGCAACAGTAGACCGT
CTTAGTGATGTTGGTGCTCTGTGAATCTTTACCATCTTGCACACGCTGTGCTAAAAAGTT
GCTGCACATACGCTGCAAGGATCCACTCTGAAGGCTCTCTAAATTATGGTGTAGAATTGC
TCGGCAGTTAGGGACTTGGAGGGCACAGAGATGGTGTGACTCGAAGGATCAAGGTGTAGG
GAGAGCGAAAGCATGGTCTAGGCT
■■Homology search results ■■ -
sp_hit_id A4IYB1
Definition sp|A4IYB1|MIAA_FRATW tRNA delta(2)-isopentenylpyrophosphate transferase OS=Francisella tularensis subsp. tularensis (strain WY96-3418)
Align length 100
Score (bit) 32.0
E-value 3.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK963198|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_O06, 5'
(684 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A4IYB1|MIAA_FRATW tRNA delta(2)-isopentenylpyrophosphate tran... 32 3.2
sp|Q5NH42|MIAA_FRATT tRNA delta(2)-isopentenylpyrophosphate tran... 32 3.2
sp|Q0BM87|MIAA_FRATO tRNA delta(2)-isopentenylpyrophosphate tran... 32 3.2
sp|A0Q6S4|MIAA_FRATN tRNA delta(2)-isopentenylpyrophosphate tran... 32 3.2
sp|Q2A3T6|MIAA_FRATH tRNA delta(2)-isopentenylpyrophosphate tran... 32 3.2
sp|A7NBS1|MIAA_FRATF tRNA delta(2)-isopentenylpyrophosphate tran... 32 3.2
sp|Q14IJ4|MIAA_FRAT1 tRNA delta(2)-isopentenylpyrophosphate tran... 32 3.2
sp|Q4PBF2|NOP58_USTMA Nucleolar protein NOP58 OS=Ustilago maydis... 31 7.1
sp|Q7TM95|TIGD3_MOUSE Tigger transposable element-derived protei... 30 9.1

>sp|A4IYB1|MIAA_FRATW tRNA delta(2)-isopentenylpyrophosphate
transferase OS=Francisella tularensis subsp. tularensis
(strain WY96-3418) GN=miaA PE=3 SV=1
Length = 308

Score = 32.0 bits (71), Expect = 3.2
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Frame = -1

Query: 642 ESHHLCALQVPNCRAILHHNLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA 463
E LCAL VPN R+ILH N+ES Q + G + N+ K
Sbjct: 189 EDLKLCAL-VPNDRSILHKNIESR------------FRQMLDQGFLDEVQNLHKNPMLTK 235

Query: 462 *TTALKGGLQIKSWSF------YGELQKDGCGSRTRLQRR 361
TTA++ ++W + Y E K G + +L +R
Sbjct: 236 ETTAIRSVGYRQAWEYLDGDISYDEFVKKGIVATRQLAKR 275


>sp|Q5NH42|MIAA_FRATT tRNA delta(2)-isopentenylpyrophosphate
transferase OS=Francisella tularensis subsp. tularensis
GN=miaA PE=3 SV=1
Length = 308

Score = 32.0 bits (71), Expect = 3.2
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Frame = -1

Query: 642 ESHHLCALQVPNCRAILHHNLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA 463
E LCAL VPN R+ILH N+ES Q + G + N+ K
Sbjct: 189 EDLKLCAL-VPNDRSILHKNIESR------------FRQMLDQGFLDEVQNLHKNPMLTK 235

Query: 462 *TTALKGGLQIKSWSF------YGELQKDGCGSRTRLQRR 361
TTA++ ++W + Y E K G + +L +R
Sbjct: 236 ETTAIRSVGYRQAWEYLDGDISYDEFVKKGIVATRQLAKR 275


>sp|Q0BM87|MIAA_FRATO tRNA delta(2)-isopentenylpyrophosphate
transferase OS=Francisella tularensis subsp. holarctica
(strain OSU18) GN=miaA PE=3 SV=1
Length = 308

Score = 32.0 bits (71), Expect = 3.2
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Frame = -1

Query: 642 ESHHLCALQVPNCRAILHHNLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA 463
E LCAL VPN R+ILH N+ES Q + G + N+ K
Sbjct: 189 EDLKLCAL-VPNDRSILHKNIESR------------FRQMLDQGFLDEVQNLHKNPMLTK 235

Query: 462 *TTALKGGLQIKSWSF------YGELQKDGCGSRTRLQRR 361
TTA++ ++W + Y E K G + +L +R
Sbjct: 236 ETTAIRSVGYRQAWEYLDGDISYDEFVKKGIVATRQLAKR 275


>sp|A0Q6S4|MIAA_FRATN tRNA delta(2)-isopentenylpyrophosphate
transferase OS=Francisella tularensis subsp. novicida
(strain U112) GN=miaA PE=3 SV=1
Length = 308

Score = 32.0 bits (71), Expect = 3.2
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Frame = -1

Query: 642 ESHHLCALQVPNCRAILHHNLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA 463
E LCAL VPN R+ILH N+ES Q + G + N+ K
Sbjct: 189 EELKLCAL-VPNDRSILHKNIESR------------FRQMLDQGFLDEVQNLRKNRMLTK 235

Query: 462 *TTALKGGLQIKSWSF------YGELQKDGCGSRTRLQRR 361
TTA++ ++W + Y E K G + +L +R
Sbjct: 236 ETTAIRSVGYRQAWEYLDGDISYDEFVKKGIVATRQLAKR 275


>sp|Q2A3T6|MIAA_FRATH tRNA delta(2)-isopentenylpyrophosphate
transferase OS=Francisella tularensis subsp. holarctica
(strain LVS) GN=miaA PE=3 SV=1
Length = 308

Score = 32.0 bits (71), Expect = 3.2
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Frame = -1

Query: 642 ESHHLCALQVPNCRAILHHNLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA 463
E LCAL VPN R+ILH N+ES Q + G + N+ K
Sbjct: 189 EDLKLCAL-VPNDRSILHKNIESR------------FRQMLDQGFLDEVQNLHKNPMLTK 235

Query: 462 *TTALKGGLQIKSWSF------YGELQKDGCGSRTRLQRR 361
TTA++ ++W + Y E K G + +L +R
Sbjct: 236 ETTAIRSVGYRQAWEYLDGDISYDEFVKKGIVATRQLAKR 275


>sp|A7NBS1|MIAA_FRATF tRNA delta(2)-isopentenylpyrophosphate
transferase OS=Francisella tularensis subsp. holarctica
(strain FTA) GN=miaA PE=3 SV=1
Length = 308

Score = 32.0 bits (71), Expect = 3.2
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Frame = -1

Query: 642 ESHHLCALQVPNCRAILHHNLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA 463
E LCAL VPN R+ILH N+ES Q + G + N+ K
Sbjct: 189 EDLKLCAL-VPNDRSILHKNIESR------------FRQMLDQGFLDEVQNLHKNPMLTK 235

Query: 462 *TTALKGGLQIKSWSF------YGELQKDGCGSRTRLQRR 361
TTA++ ++W + Y E K G + +L +R
Sbjct: 236 ETTAIRSVGYRQAWEYLDGDISYDEFVKKGIVATRQLAKR 275


>sp|Q14IJ4|MIAA_FRAT1 tRNA delta(2)-isopentenylpyrophosphate
transferase OS=Francisella tularensis subsp. tularensis
(strain FSC 198) GN=miaA PE=3 SV=1
Length = 308

Score = 32.0 bits (71), Expect = 3.2
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Frame = -1

Query: 642 ESHHLCALQVPNCRAILHHNLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA 463
E LCAL VPN R+ILH N+ES Q + G + N+ K
Sbjct: 189 EDLKLCAL-VPNDRSILHKNIESR------------FRQMLDQGFLDEVQNLHKNPMLTK 235

Query: 462 *TTALKGGLQIKSWSF------YGELQKDGCGSRTRLQRR 361
TTA++ ++W + Y E K G + +L +R
Sbjct: 236 ETTAIRSVGYRQAWEYLDGDISYDEFVKKGIVATRQLAKR 275


>sp|Q4PBF2|NOP58_USTMA Nucleolar protein NOP58 OS=Ustilago maydis
GN=NOP58 PE=3 SV=1
Length = 582

Score = 30.8 bits (68), Expect = 7.1
Identities = 21/87 (24%), Positives = 36/87 (41%)
Frame = -1

Query: 585 NLESLQSGSLQRMCSNFLAQRVQDGKDSQSTNITKTVYCCA*TTALKGGLQIKSWSFYGE 406
++ ++ G + + FL + +GK + N+ A A K G+Q+ ++ E
Sbjct: 60 DISAINEGKMSKSLKKFLTDEIVEGKGKEKENLIVAESKLASNIAKKLGIQV---TYDSE 116

Query: 405 LQKDGCGSRTRLQRRLILQGGDDQNDP 325
L G R L L GD+ DP
Sbjct: 117 LLDLYRGIRENLATLLSSSSGDESLDP 143


>sp|Q7TM95|TIGD3_MOUSE Tigger transposable element-derived protein 3
OS=Mus musculus GN=Tigd3 PE=2 SV=1
Length = 470

Score = 30.4 bits (67), Expect = 9.1
Identities = 21/36 (58%), Positives = 21/36 (58%)
Frame = +3

Query: 267 PLSVSSFAPLCPPPPILAFKGHSDRHRLAILSVFAA 374
PLS SS P P ILAFK H RHRL LS AA
Sbjct: 286 PLSASSTTPSLPGSVILAFKAHY-RHRL--LSKLAA 318


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK963198|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_O06, 5'
(684 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******