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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963182
Clone id TST39A01NGRL0015_N14
Library
Length 595
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_N14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
ATTCAAGTGATGGACAATCTAGCAATATAAACCATTCTTCTTCTTCCTCTTCTATTTCTT
CTTCTTCCTCCAAATCAATCAGCAGTCCCGAGTTGACTGAGGAAGAGGTTGTTGCCCAGG
CAACAGAATACAGTTTGAGGATTATTAAAGGTGTTGTTGCCCCAGTGAGAAGAGTCAAGC
GTACAAAGGTTACAACTTGTCAGCAGGCCAAACGTGTTCCTTTCCGAACATTTACTATGG
AGTCACCATCCGGCCAGTGCTTATTAGATTCTGAAAAGATCAAATTCACATGTGCCATAC
GACAGAGAAAGATAAAGTATAATCAAATTCTTGACATGAGCAAAGTGGGAAAGAATTCTG
TTACAATAATTTACAATGTACAAGCTAAAACTATTTTTTTCAAGACTGAAGAAGAAGTAG
ATGAGTTTTTTAATCTCGTTCAATCCTTGAGAGTTTCTATTTCCTCTCCTACGACCCCTG
CTTCTCCTGCTTCTCCTTCTCTTTCATCCTCCCGTTCCCAAACTCCCTCTATTGCTCCAC
TCAACTTGTCTTCTACCTCCTCATCTTCTCTACAAGAAGACCAATCAGATAGAGT
■■Homology search results ■■ -
sp_hit_id Q62774
Definition sp|Q62774|MYO1A_RAT Myosin-Ia (Fragment) OS=Rattus norvegicus
Align length 24
Score (bit) 31.2
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963182|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_N14, 5'
         (595 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q62774|MYO1A_RAT Myosin-Ia (Fragment) OS=Rattus norvegicus GN...    31   4.1  
sp|O88329|MYO1A_MOUSE Myosin-Ia OS=Mus musculus GN=Myo1a PE=2 SV=2     31   4.1  
sp|Q9UBC5|MYO1A_HUMAN Myosin-Ia OS=Homo sapiens GN=MYO1A PE=1 SV=1     31   4.1  
sp|P10568|MYO1A_BOVIN Myosin-Ia OS=Bos taurus GN=MYO1A PE=2 SV=1       31   4.1  
sp|A1RU37|RS5_PYRIL 30S ribosomal protein S5P OS=Pyrobaculum isl...    31   5.3  
sp|Q8PK29|ARGB_XANAC Acetylglutamate kinase OS=Xanthomonas axono...    30   7.0  
sp|P75079|Y035_MYCPN Uncharacterized protein MPN_035 OS=Mycoplas...    30   9.1  
sp|Q9JI55|PLEC1_CRIGR Plectin-1 (Fragment) OS=Cricetulus griseus...    30   9.1  
sp|Q05096|MYO1B_RAT Myosin-Ib OS=Rattus norvegicus GN=Myo1b PE=2...    30   9.1  
sp|P46735|MYO1B_MOUSE Myosin-Ib OS=Mus musculus GN=Myo1b PE=2 SV=2     30   9.1  
sp|O43795|MYO1B_HUMAN Myosin-Ib OS=Homo sapiens GN=MYO1B PE=1 SV=3     30   9.1  
sp|Q10265|HSP71_SCHPO Probable heat shock protein ssa1 OS=Schizo...    30   9.1  

>sp|Q62774|MYO1A_RAT Myosin-Ia (Fragment) OS=Rattus norvegicus
           GN=Myo1a PE=2 SV=1
          Length = 842

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 422 IYFFFSLEKNSFSLYIVNYCNRIL 351
           IY F  LE NSF  +++NYCN  L
Sbjct: 373 IYGFEILEDNSFEQFVINYCNEKL 396


>sp|O88329|MYO1A_MOUSE Myosin-Ia OS=Mus musculus GN=Myo1a PE=2 SV=2
          Length = 1043

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 422 IYFFFSLEKNSFSLYIVNYCNRIL 351
           IY F  LE NSF  +++NYCN  L
Sbjct: 381 IYGFEILEDNSFEQFVINYCNERL 404


>sp|Q9UBC5|MYO1A_HUMAN Myosin-Ia OS=Homo sapiens GN=MYO1A PE=1 SV=1
          Length = 1043

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 422 IYFFFSLEKNSFSLYIVNYCNRIL 351
           IY F  LE NSF  +++NYCN  L
Sbjct: 381 IYGFEILEDNSFEQFVINYCNEKL 404


>sp|P10568|MYO1A_BOVIN Myosin-Ia OS=Bos taurus GN=MYO1A PE=2 SV=1
          Length = 1043

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 422 IYFFFSLEKNSFSLYIVNYCNRIL 351
           IY F  LE NSF  +++NYCN  L
Sbjct: 381 IYGFEILEDNSFEQFVINYCNEKL 404


>sp|A1RU37|RS5_PYRIL 30S ribosomal protein S5P OS=Pyrobaculum
           islandicum (strain DSM 4184 / JCM 9189) GN=rps5p PE=3
           SV=1
          Length = 202

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 9/107 (8%)
 Frame = +3

Query: 111 VAQATEYSLRIIKGVVAPVRRVKRTKVTTCQQAKRVPF---------RTFTMESPSGQCL 263
           V QA E ++R  K  + PVRR   +   +C +   VPF             + +P G  L
Sbjct: 95  VRQAIEKAVREAKLNLTPVRRGCGSWKCSCDEPHSVPFVVRGKSGSVEVTLIPAPKGVGL 154

Query: 264 LDSEKIKFTCAIRQRKIKYNQILDMSKVGKNSVTIIYNVQAKTIFFK 404
           +  +  K    +   K  + Q    ++   N    +YN    T +FK
Sbjct: 155 VAGDVAKVVLRLAGIKDVWTQTRGDTRTTLNFAMAVYNALRNTYYFK 201


>sp|Q8PK29|ARGB_XANAC Acetylglutamate kinase OS=Xanthomonas
           axonopodis pv. citri GN=argB PE=3 SV=2
          Length = 426

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +3

Query: 126 EYSLRIIKGVVAPVRRVKRTKVTTCQQAKRVPFRTFTMESPSGQCL 263
           EY  R I G+V  V+ V    +    QA  +P  T   E+PSGQ L
Sbjct: 124 EYLDRDIYGLVGEVKAVNLAPIEASLQAGSIPVITSLGETPSGQIL 169


>sp|P75079|Y035_MYCPN Uncharacterized protein MPN_035 OS=Mycoplasma
           pneumoniae GN=MPN_035 PE=3 SV=1
          Length = 666

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 309 KIKYNQILDMSKVGKNSVTIIYNVQAKTIFFKTEEEVDEFFN 434
           ++++N +L + ++ +N V   +N+Q KT  F  +   DE FN
Sbjct: 208 QVQFNLVLQL-QINRNPVLFDFNLQLKTNNFANQTSFDELFN 248


>sp|Q9JI55|PLEC1_CRIGR Plectin-1 (Fragment) OS=Cricetulus griseus
           GN=PLEC1 PE=1 SV=1
          Length = 4473

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = +3

Query: 102 EEVVAQATEYSLRIIKGVVAPVRRVKRTKVTTCQQAKRVP 221
           E +VA  TEY+LR+  GV APV +V      T Q  +R P
Sbjct: 408 ERLVAIRTEYNLRLKAGVAAPVTQV------TVQSTQRRP 441


>sp|Q05096|MYO1B_RAT Myosin-Ib OS=Rattus norvegicus GN=Myo1b PE=2
           SV=1
          Length = 1136

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 422 IYFFFSLEKNSFSLYIVNYCNRIL 351
           IY F   E NSF  +I+NYCN  L
Sbjct: 388 IYGFEIFEDNSFEQFIINYCNEKL 411


>sp|P46735|MYO1B_MOUSE Myosin-Ib OS=Mus musculus GN=Myo1b PE=2 SV=2
          Length = 1107

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 422 IYFFFSLEKNSFSLYIVNYCNRIL 351
           IY F   E NSF  +I+NYCN  L
Sbjct: 388 IYGFEIFEDNSFEQFIINYCNEKL 411
tr_hit_id Q057R7
Definition tr|Q057R7|Q057R7_BUCCC TRNA-specific adenosine deaminase OS=Buchnera aphidicola subsp. Cinara cedri
Align length 42
Score (bit) 35.0
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963182|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_N14, 5'
         (595 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q057R7|Q057R7_BUCCC TRNA-specific adenosine deaminase OS=Buch...    35   3.2  
tr|A7NL22|A7NL22_ROSCS Peptidase S16 lon domain protein OS=Rosei...    35   3.2  
tr|A5UXL7|A5UXL7_ROSS1 ATP-dependent protease-like protein OS=Ro...    35   4.2  
tr|B8MUN6|B8MUN6_9EURO Putative uncharacterized protein OS=Talar...    35   4.3  
tr|B8MUN5|B8MUN5_9EURO Putative uncharacterized protein OS=Talar...    35   4.3  
tr|B0WDK8|B0WDK8_CULQU Unconventional myosin 95e OS=Culex quinqu...    34   5.5  
tr|A0DTB5|A0DTB5_PARTE Chromosome undetermined scaffold_62, whol...    33   9.4  

>tr|Q057R7|Q057R7_BUCCC TRNA-specific adenosine deaminase
           OS=Buchnera aphidicola subsp. Cinara cedri GN=tadA PE=4
           SV=1
          Length = 153

 Score = 35.0 bits (79), Expect = 3.2
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 434 IKKLIYFFFSLEKNSFSLYI-VNYCNRILSHFAHVKNLIILY 312
           I K++Y  +S +KN FS YI   Y N I  H   +K+ I+LY
Sbjct: 96  INKVVYGSYSFKKNCFSYYINFLYINNIKHHIKEIKSGILLY 137


>tr|A7NL22|A7NL22_ROSCS Peptidase S16 lon domain protein
           OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8)
           GN=Rcas_2107 PE=4 SV=1
          Length = 806

 Score = 35.0 bits (79), Expect = 3.2
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +3

Query: 219 PFRTFTMESPSGQCLLDSEKIKFTCAIRQRKIKYNQILDMSKVGKNSVTIIYNVQAKTIF 398
           PFR+   + PSG+  +D   I +   +  RK + N ++D S+     V + YN     +F
Sbjct: 278 PFRSGGQQQPSGEAQVDLASIPWLRELPFRKYQVNVLIDNSRQQGAPVVVEYNPTYPNLF 337

Query: 399 FKTEEE 416
            + E+E
Sbjct: 338 GRIEKE 343


>tr|A5UXL7|A5UXL7_ROSS1 ATP-dependent protease-like protein
           OS=Roseiflexus sp. (strain RS-1) GN=RoseRS_3006 PE=4
           SV=1
          Length = 815

 Score = 34.7 bits (78), Expect = 4.2
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +3

Query: 219 PFRTFTMESPSGQCLLDSEKIKFTCAIRQRKIKYNQILDMSKVGKNSVTIIYNVQAKTIF 398
           PFR+   + PSG+  +D   + +   +  RK + N ++D S+     V + YN     +F
Sbjct: 278 PFRSGGQQQPSGEAQVDLASVPWLKELPFRKYQVNVLIDNSRQQGAPVVVEYNPTYPNLF 337

Query: 399 FKTEEE 416
            + E+E
Sbjct: 338 GRIEKE 343


>tr|B8MUN6|B8MUN6_9EURO Putative uncharacterized protein
           OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_108850 PE=4
           SV=1
          Length = 686

 Score = 34.7 bits (78), Expect = 4.3
 Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 11/115 (9%)
 Frame = -1

Query: 433 LKNSSTSSSVLKKIVLACTL*I-----------IVTEFFPTLLMSRI*LYFIFLCRMAHV 287
           +   ST S+ L K+ LA +L             I  E  P LL        I L ++AH 
Sbjct: 498 IAQQSTGSATLLKLALAESLFAQYRRSEAEGICIEIEHLPKLLKMEKLRLSIILAKLAHT 557

Query: 286 NLIFSESNKHWPDGDSIVNVRKGTRLAC*QVVTFVRLTLLTGATTPLIILKLYSV 122
           +  + E+ +HW D  + ++                R  L  G  T +I+L +Y V
Sbjct: 558 SAKYDEALRHWTDAMTAIS----------------RYNLANGRATRIILLSMYDV 596


>tr|B8MUN5|B8MUN5_9EURO Putative uncharacterized protein
           OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_108850 PE=4
           SV=1
          Length = 778

 Score = 34.7 bits (78), Expect = 4.3
 Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 11/115 (9%)
 Frame = -1

Query: 433 LKNSSTSSSVLKKIVLACTL*I-----------IVTEFFPTLLMSRI*LYFIFLCRMAHV 287
           +   ST S+ L K+ LA +L             I  E  P LL        I L ++AH 
Sbjct: 590 IAQQSTGSATLLKLALAESLFAQYRRSEAEGICIEIEHLPKLLKMEKLRLSIILAKLAHT 649

Query: 286 NLIFSESNKHWPDGDSIVNVRKGTRLAC*QVVTFVRLTLLTGATTPLIILKLYSV 122
           +  + E+ +HW D  + ++                R  L  G  T +I+L +Y V
Sbjct: 650 SAKYDEALRHWTDAMTAIS----------------RYNLANGRATRIILLSMYDV 688


>tr|B0WDK8|B0WDK8_CULQU Unconventional myosin 95e OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ005350 PE=4 SV=1
          Length = 1157

 Score = 34.3 bits (77), Expect = 5.5
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
 Frame = -3

Query: 419 YFFFSLEKNSFSLYIVNYCN-RILSHFAHVKNLI----ILYLSLSYGTCEFDLF 273
           Y F  LEKNSF  + +NYCN R+  H+  VKN++     LYL+      + D F
Sbjct: 574 YGFEVLEKNSFEQFAINYCNERLQQHY--VKNVLKYQQDLYLAEGLDWIKIDYF 625


>tr|A0DTB5|A0DTB5_PARTE Chromosome undetermined scaffold_62, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00019975001 PE=4 SV=1
          Length = 532

 Score = 33.5 bits (75), Expect = 9.4
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
 Frame = +3

Query: 186 KVTTCQQAKRVPFRTFTMESPSGQCLLDSEKIKFTCAIRQRKIKYN------QILDMSKV 347
           K+  C   K +  R FT   P      D  K  F C + Q+ I+Y       QIL + ++
Sbjct: 257 KIFECTNNK-LQQRMFTKLKPH---FYDLSKNAFGCRVMQKLIEYTYNRNDLQILVLQQL 312

Query: 348 GKNSVTIIYNVQAKTIFFKTEEEVDEF 428
             N  +++Y++    + FK  E  D+F
Sbjct: 313 QSNMRSLVYDLNGNYVIFKMLETFDKF 339