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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963159
Clone id TST39A01NGRL0015_M14
Library
Length 558
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_M14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
ATTGAGGTTTCCGTGCTTTCCTCACGTAGCGGTTGCTTTTATGCATGCAAGACCAACTTT
AATGTGTGAATGCTGATCCCACCGGTATCTTCAGCTTCTCCACCTTCTTACACATTCCGT
CAAGAAGTCAGGTTTACACAGATTATTCGATGACAGCTAGTGCAAGGTTGGTTTTTGTAG
TTCTCCAGCTGAATTATGCACTGCCCATGGGGTTTTCGGGTACTACGGAGACTTTGAATT
GAGATAAAAAGGGCTTTGCCAACTTGTTCCACTTCAATTGTGGTCTTATGGAGACGGAAC
ACGTTTTTGTGGATGCGGATGACACAGATTTCTTGTCAATGTCGTATGAGCCAAGGATCC
TAGACCCTCTGCCTTCACCAAGAGAAACATCAGAGGGGTGGGTCGAACGCCATGGAGGTG
ATTGGGACACCTTACCACATGTTCACAGCAGTGCAAATTTTACAAGCCGGGATTATGCAA
ATGTTGTAGGGAAGGGCGATTCCTTGGCTGACCCTGAAACACTAGAAAAGGTTTGGAGTT
GGACAGCAAATGTGTGTA
■■Homology search results ■■ -
sp_hit_id Q6PCQ0
Definition sp|Q6PCQ0|IQCE_MOUSE IQ domain-containing protein E OS=Mus musculus
Align length 80
Score (bit) 33.9
E-value 0.56
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963159|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_M14, 5'
         (558 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6PCQ0|IQCE_MOUSE IQ domain-containing protein E OS=Mus muscu...    34   0.56 
sp|Q9HN97|SYI_HALSA Isoleucyl-tRNA synthetase OS=Halobacterium s...    33   0.94 
sp|Q6ZUJ8|BCAP_HUMAN Phosphoinositide 3-kinase adapter protein 1...    32   2.7  
sp|A4W5F0|LAMB_ENT38 Maltoporin OS=Enterobacter sp. (strain 638)...    30   8.0  
sp|Q5ZJL7|DDB2_CHICK DNA damage-binding protein 2 OS=Gallus gall...    30   8.0  
sp|Q7S6J4|HSE1_NEUCR Class E vacuolar protein-sorting machinery ...    30   8.1  

>sp|Q6PCQ0|IQCE_MOUSE IQ domain-containing protein E OS=Mus musculus
           GN=Iqce PE=2 SV=1
          Length = 778

 Score = 33.9 bits (76), Expect = 0.56
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
 Frame = -1

Query: 267 TSWQS-----PFYLNSKSP*YPKTPWAVHNSAGELQKPTLH*LSSNNL------CKPDFL 121
           TSW+S        L+S+    P+  W   +  G + +P    L+S +       C PD+L
Sbjct: 55  TSWRSLKTAGSMPLSSRMSLTPQKLWLGSSKQGSVAQPPSPTLTSEHAWTHPPSCTPDYL 114

Query: 120 TECVRRWRS*RYRWDQHSHI 61
           TE VR  R+   R   H H+
Sbjct: 115 TEAVRAKRADLRRSGSHGHV 134


>sp|Q9HN97|SYI_HALSA Isoleucyl-tRNA synthetase OS=Halobacterium
           salinarium GN=ileS PE=3 SV=1
          Length = 1070

 Score = 33.1 bits (74), Expect = 0.94
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +3

Query: 276 NCGLMETEHVFVDADDTDFLSMSYEPRILDPLPSPRETSEGWVERHGGDW---DTLPHVH 446
           + G      +  D   +D +  SY P + D +P+    ++G  E + GDW   D    VH
Sbjct: 270 SAGGYSDHEIVADHSGSDLIGWSYTPPLADAVPANPTDADGTHEVYHGDWVEADRTGLVH 329

Query: 447 SSANFTSRDY 476
           S+      D+
Sbjct: 330 SAPGHGEEDF 339


>sp|Q6ZUJ8|BCAP_HUMAN Phosphoinositide 3-kinase adapter protein 1
           OS=Homo sapiens GN=PIK3AP1 PE=1 SV=2
          Length = 805

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
 Frame = +3

Query: 156 ASARLVFVVLQLNYALPM---GFSGTTET------LN*DKKGFANLFHFNCGLMETEHVF 308
           A+  L   +LQ + + P+   GFS  T+       L  +  G  NL    C L + E V+
Sbjct: 454 ATEDLYVEMLQASTSNPIPGDGFSRATKDSMIRKFLEGNSMGMTNLERDQCHLGQEEDVY 513

Query: 309 VDADDTDFLSMSYEPRILDPLPSPRETSEG 398
              DD +  S+    R   P+P P  T+ G
Sbjct: 514 HTVDDDEAFSVDLASRPPVPVPRPETTAPG 543


>sp|A4W5F0|LAMB_ENT38 Maltoporin OS=Enterobacter sp. (strain 638)
           GN=lamB PE=2 SV=1
          Length = 444

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -3

Query: 412 WRSTHPSDVSLGEGRGSRILGSYDIDKKSVSSASTKTCSVSIRPQLKWNKLAKPFL 245
           WR      +SLG+      +G Y  D    S+  TK  +V +RP  KW  +    L
Sbjct: 293 WRVLDHGAISLGDSWDLMYVGMYQ-DINLDSNNGTKWWTVGVRPMFKWTPIMSTLL 347


>sp|Q5ZJL7|DDB2_CHICK DNA damage-binding protein 2 OS=Gallus gallus
           GN=DDB2 PE=2 SV=1
          Length = 507

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 412 WRSTHPSDVSLGEGRGSRILGSYDIDKKSVSSASTKTCSV 293
           W  THPS V++G   G  IL  Y++         TKTC +
Sbjct: 132 WHPTHPSTVAVGSKGGDIILWDYEV--------LTKTCFI 163


>sp|Q7S6J4|HSE1_NEUCR Class E vacuolar protein-sorting machinery
           protein hse-1 OS=Neurospora crassa GN=hse-1 PE=3 SV=1
          Length = 745

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
 Frame = -1

Query: 426 PNHLHGVRP--TPLMFLLVKAEGLGSLAHTTLTRNLCHPHPQKRV---------PSP*DH 280
           PN  H +RP  TP  + +  AEG G L H         P+PQ++          P     
Sbjct: 451 PNPNHFIRPAGTPAPYYMGGAEGPGQLQHQQQP-----PYPQQQPQPAYGAPSRPQDQQR 505

Query: 279 N*SGTSWQSPFYLNSKSP*YPKTPWAVHNSAG 184
           N SG S  +P  LN+ S   P   +  + + G
Sbjct: 506 NPSGPSPMAPAPLNTTSSPPPGNQYTPYQAPG 537
tr_hit_id A8IC67
Definition tr|A8IC67|A8IC67_CHLRE TafII-250 protein OS=Chlamydomonas reinhardtii
Align length 76
Score (bit) 36.2
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963159|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_M14, 5'
         (558 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8IC67|A8IC67_CHLRE TafII-250 protein OS=Chlamydomonas reinha...    36   1.2  
tr|B7F737|B7F737_ORYSJ cDNA clone:J023120H23, full insert sequen...    33   7.9  

>tr|A8IC67|A8IC67_CHLRE TafII-250 protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_165922 PE=4 SV=1
          Length = 625

 Score = 36.2 bits (82), Expect = 1.2
 Identities = 29/76 (38%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = -1

Query: 507 PRNRPSLQHLHNPGL*NLHCCEHVVRCPNHLHGVRPTPLMFLLVKA-EGLGSLAHTTLTR 331
           P N P    L  PGL  L    H+ + P   H  RP+   FLLV+A  G   L   T T 
Sbjct: 189 PENTPFYTPLP-PGLTVLCVDTHMFKAPAAPHDPRPSD--FLLVRAPHGFVQLRELTGTL 245

Query: 330 NLCHPHPQKRVPSP*D 283
            +   HP +RVP P D
Sbjct: 246 TVGQQHPHERVPDPWD 261


>tr|B7F737|B7F737_ORYSJ cDNA clone:J023120H23, full insert sequence
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 202

 Score = 33.5 bits (75), Expect = 7.9
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
 Frame = +2

Query: 59  LMCEC*SHRYLQLLHLLTHSVKKSGLHRLFDDS*CKVGFCSSPAELCTAH-GVFGYYGDF 235
           LM     H  L+LLH + H+++   LH L   +   +  C +   L   H  +  Y+GD 
Sbjct: 35  LMISIIHHAILKLLHHVFHAIELIKLHVLLQKN-LTLALCQALLLLSNLHINIVPYFGDM 93

Query: 236 ELR*KGLCQLVPLQLWSYGDGTRFCG 313
                 LC+   L+ W +GDG    G
Sbjct: 94  GALGIDLCRRSRLR-WPHGDGLHASG 118