DK963142 |
Clone id |
TST39A01NGRL0015_L20 |
Library |
TST39 |
Length |
577 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_L20. 5' end sequence. |
Accession |
DK963142 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GGTGAGTGAGTGATATTACAAAACACCCCACCGAGTTGCCTCTTTGTATGCAAAATGCTG TAATTTTTGTCCTACACTATCCATCCATTGCTGCTATCTTTACTTGTGGCCTTGATCCTC AATAATAAAAAATAGCAAATGCCTTTAGACAGCTCATCACCTATTACACAAGTCTCCAGA GATGACCAATCTGCCGTAACGAAACCAGAGAAAGAAAAGAAGAAAAATAAAAATGGATTT TTATCATCATTCTTTTGTTGCTTTGTTTCTTCTCCAGAAGAGTCTCCAAAAGCAAATAAT CCGTACCTCAAGGAAGTAGTCAAGTCTCCTGAAACTGTGCAATATCTTTTGCCCCCACAA AAGGGCAAAGAGATTGGTTTAAAGACTCTTGTTTTAGACTTGGATGAGACTCTTGTTCAC AGTTCATTTAAGCCAGTACCAAATGCTGATTTTATCATACCTGTGGAAATAGACAATCAA GTTCATCAAGTGTATGTTCTCAAGCGACCTGGGGTGGACCAATTTTTAAAGTCTATGGGT GAGAAGTTTGAAGTGGTTGTGTTTACTGCAAGTTTAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P58466 |
Definition |
sp|P58466|CTDS1_MOUSE Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS=Mus musculus |
Align length |
80 |
Score (bit) |
114.0 |
E-value |
5.0e-25 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q4SM89 |
Definition |
tr|Q4SM89|Q4SM89_TETNG Chromosome 3 SCAF14553, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis |
Align length |
104 |
Score (bit) |
121.0 |
E-value |
2.0e-26 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK963142|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0015_L20, 5' (577 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q4SM89|Q4SM89_TETNG Chromosome 3 SCAF14553, whole genome shot... 121 2e-26 tr|B6L7J3|B6L7J3_BRAFL Putative uncharacterized protein OS=Branc... 120 5e-26 tr|Q7T227|Q7T227_XENLA NIF OS=Xenopus laevis GN=ctdspl PE=2 SV=1 118 3e-25 tr|B6L7J8|B6L7J8_BRAFL Putative uncharacterized protein OS=Branc... 117 6e-25 tr|B4N728|B4N728_DROWI GK23622 OS=Drosophila willistoni GN=GK236... 117 6e-25 tr|B4LDZ8|B4LDZ8_DROVI GJ11778 OS=Drosophila virilis GN=GJ11778 ... 116 8e-25 tr|B4J3N7|B4J3N7_DROGR GH16757 OS=Drosophila grimshawi GN=GH1675... 116 8e-25 tr|Q17FD5|Q17FD5_AEDAE Nuclear lim interactor-interacting factor... 116 1e-24 tr|B4KYH7|B4KYH7_DROMO GI13418 OS=Drosophila mojavensis GN=GI134... 116 1e-24 tr|Q75FA0|Q75FA0_ASHGO AAL158Wp OS=Ashbya gossypii GN=AAL158W PE... 116 1e-24 tr|Q9VUX0|Q9VUX0_DROME CG5830 OS=Drosophila melanogaster GN=CG58... 115 1e-24 tr|Q7YU53|Q7YU53_DROME RE52350p OS=Drosophila melanogaster GN=CG... 115 1e-24 tr|B4QLS5|B4QLS5_DROSI GD12523 OS=Drosophila simulans GN=GD12523... 115 1e-24 tr|B4ITV4|B4ITV4_DROYA GE23126 OS=Drosophila yakuba GN=GE23126 P... 115 1e-24 tr|B4HIM4|B4HIM4_DROSE GM24453 OS=Drosophila sechellia GN=GM2445... 115 1e-24 tr|B3NDQ2|B3NDQ2_DROER GG13507 OS=Drosophila erecta GN=GG13507 P... 115 1e-24 tr|B3M9T8|B3M9T8_DROAN GF10364 OS=Drosophila ananassae GN=GF1036... 115 1e-24 tr|Q501U1|Q501U1_DANRE Zgc:113169 OS=Danio rerio GN=zgc:113169 P... 115 2e-24 tr|B0S5V5|B0S5V5_DANRE Novel protein similar to H.sapiens CTDSPL... 115 2e-24 tr|Q7Q305|Q7Q305_ANOGA AGAP011422-PA (Fragment) OS=Anopheles gam... 115 2e-24 tr|B0WLQ5|B0WLQ5_CULQU Nuclear lim interactor-interacting factor... 114 3e-24 tr|Q7Z5Q4|Q7Z5Q4_HUMAN Small CTD phosphatase 1 OS=Homo sapiens P... 114 4e-24 tr|Q5I0X8|Q5I0X8_MOUSE CTD (Carboxy-terminal domain, RNA polymer... 114 5e-24 tr|Q7Z5Q3|Q7Z5Q3_HUMAN Small CTD phosphatase 1 splice variant OS... 114 5e-24 tr|B1WC24|B1WC24_RAT Ctdsp1 protein (RCG23761) OS=Rattus norvegi... 113 7e-24 tr|Q29D94|Q29D94_DROPS GA19163 OS=Drosophila pseudoobscura pseud... 113 7e-24 tr|B4H7T2|B4H7T2_DROPE GL12819 OS=Drosophila persimilis GN=GL128... 113 7e-24 tr|Q4S532|Q4S532_TETNG Chromosome 6 SCAF14737, whole genome shot... 113 9e-24 tr|Q4SNU5|Q4SNU5_TETNG Chromosome 15 SCAF14542, whole genome sho... 112 1e-23 tr|Q52KL5|Q52KL5_MOUSE CTD (Carboxy-terminal domain, RNA polymer... 112 2e-23
>tr|Q4SM89|Q4SM89_TETNG Chromosome 3 SCAF14553, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00015889001 PE=4 SV=1 Length = 258
Score = 121 bits (304), Expect = 2e-26 Identities = 69/104 (66%), Positives = 75/104 (72%), Gaps = 3/104 (2%) Frame = +1
Query: 274 PEESPKANN-PYLKEVVKSPETVQY--LLPPQKGKEIGLKTLVLDLDETLVHSSFKPVPN 444 PE P NN P L E + VQ LLPP K K+ G +V+DLDETLVHSSFKPV N Sbjct: 53 PEPQPVNNNAPLLVEENGTVSKVQVKPLLPPVKSKDSGKICVVIDLDETLVHSSFKPVNN 112
Query: 445 ADFIIPVEIDNQVHQVYVLKRPGVDQFLKSMGEKFEVVVFTASL 576 ADFIIPVEID VHQVYVLKRP VD+FLK MGE FE V+FTASL Sbjct: 113 ADFIIPVEIDGTVHQVYVLKRPHVDEFLKRMGELFECVLFTASL 156
>tr|B6L7J3|B6L7J3_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_67070 PE=4 SV=1 Length = 258
Score = 120 bits (301), Expect = 5e-26 Identities = 73/155 (47%), Positives = 91/155 (58%), Gaps = 11/155 (7%) Frame = +1
Query: 145 LDSSSPITQVSRDDQSA-----------VTXXXXXXXXXXXGXXXXXXXXXXXXPEESPK 291 +DS+S ITQVSRD+++ VT G +P Sbjct: 1 MDSTSIITQVSRDEENLNPFPTPEKAAPVTTVAKKRHRSIFGSLLCCFRANSSHTPAAP- 59
Query: 292 ANNPYLKEVVKSPETVQYLLPPQKGKEIGLKTLVLDLDETLVHSSFKPVPNADFIIPVEI 471 P K P+ +YLLPP + +++ K +V+DLDETLVHSSFKPV NADFI+PVEI Sbjct: 60 -GQPEENGSAKVPQ--KYLLPPVRHQDMHKKCIVIDLDETLVHSSFKPVTNADFIVPVEI 116
Query: 472 DNQVHQVYVLKRPGVDQFLKSMGEKFEVVVFTASL 576 D VHQVYVLKRP VD+FL+ MGE FE V+FTASL Sbjct: 117 DGTVHQVYVLKRPYVDEFLQKMGEMFECVLFTASL 151
>tr|Q7T227|Q7T227_XENLA NIF OS=Xenopus laevis GN=ctdspl PE=2 SV=1 Length = 276
Score = 118 bits (295), Expect = 3e-25 Identities = 59/86 (68%), Positives = 69/86 (80%) Frame = +1
Query: 319 VKSPETVQYLLPPQKGKEIGLKTLVLDLDETLVHSSFKPVPNADFIIPVEIDNQVHQVYV 498 + SP T +YLLP K E G K +V+DLDETLVHSSFKP+ NADFI+PVEID +HQVYV Sbjct: 87 IPSPPT-KYLLPELKVSEYGKKCVVIDLDETLVHSSFKPINNADFIVPVEIDGTIHQVYV 145
Query: 499 LKRPGVDQFLKSMGEKFEVVVFTASL 576 LKRP VD+FL+ MGE FE V+FTASL Sbjct: 146 LKRPHVDEFLQKMGEMFECVLFTASL 171
>tr|B6L7J8|B6L7J8_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_67076 PE=4 SV=1 Length = 263
Score = 117 bits (292), Expect = 6e-25 Identities = 58/96 (60%), Positives = 74/96 (77%) Frame = +1
Query: 289 KANNPYLKEVVKSPETVQYLLPPQKGKEIGLKTLVLDLDETLVHSSFKPVPNADFIIPVE 468 +A +++ P+ +YLLPP + +++ K +V+DLDETLVHSSFKPV NADFI+PVE Sbjct: 63 RAEETSFSAIMQVPQ--KYLLPPVRHQDMHKKCIVIDLDETLVHSSFKPVTNADFIVPVE 120
Query: 469 IDNQVHQVYVLKRPGVDQFLKSMGEKFEVVVFTASL 576 ID VHQVYVLKRP VD+FL+ MGE FE V+FTASL Sbjct: 121 IDGTVHQVYVLKRPYVDEFLQKMGEMFECVLFTASL 156
>tr|B4N728|B4N728_DROWI GK23622 OS=Drosophila willistoni GN=GK23622 PE=4 SV=1 Length = 325
Score = 117 bits (292), Expect = 6e-25 Identities = 55/83 (66%), Positives = 68/83 (81%) Frame = +1
Query: 328 PETVQYLLPPQKGKEIGLKTLVLDLDETLVHSSFKPVPNADFIIPVEIDNQVHQVYVLKR 507 P+ +YLLP + +I K +V+DLDETLVHSSFKP+PNADFI+PVEID +HQVYVLKR Sbjct: 73 PDQQRYLLPQVRLSDIHRKCMVIDLDETLVHSSFKPIPNADFIVPVEIDGTIHQVYVLKR 132
Query: 508 PGVDQFLKSMGEKFEVVVFTASL 576 P VD+FL+ MGE +E V+FTASL Sbjct: 133 PHVDEFLQKMGELYECVLFTASL 155
>tr|B4LDZ8|B4LDZ8_DROVI GJ11778 OS=Drosophila virilis GN=GJ11778 PE=4 SV=1 Length = 329
Score = 116 bits (291), Expect = 8e-25 Identities = 54/83 (65%), Positives = 68/83 (81%) Frame = +1
Query: 328 PETVQYLLPPQKGKEIGLKTLVLDLDETLVHSSFKPVPNADFIIPVEIDNQVHQVYVLKR 507 P+ +YLLP + ++ K +V+DLDETLVHSSFKP+PNADFI+PVEID +HQVYVLKR Sbjct: 69 PDQQRYLLPQVRHSDMHRKCMVIDLDETLVHSSFKPIPNADFIVPVEIDGTIHQVYVLKR 128
Query: 508 PGVDQFLKSMGEKFEVVVFTASL 576 P VD+FL+ MGE +E V+FTASL Sbjct: 129 PHVDEFLQKMGELYECVLFTASL 151
>tr|B4J3N7|B4J3N7_DROGR GH16757 OS=Drosophila grimshawi GN=GH16757 PE=4 SV=1 Length = 341
Score = 116 bits (291), Expect = 8e-25 Identities = 54/83 (65%), Positives = 68/83 (81%) Frame = +1
Query: 328 PETVQYLLPPQKGKEIGLKTLVLDLDETLVHSSFKPVPNADFIIPVEIDNQVHQVYVLKR 507 P+ +YLLP + ++ K +V+DLDETLVHSSFKP+PNADFI+PVEID +HQVYVLKR Sbjct: 70 PDQQRYLLPQVRHSDMHRKCMVIDLDETLVHSSFKPIPNADFIVPVEIDGTIHQVYVLKR 129
Query: 508 PGVDQFLKSMGEKFEVVVFTASL 576 P VD+FL+ MGE +E V+FTASL Sbjct: 130 PHVDEFLQKMGELYECVLFTASL 152
>tr|Q17FD5|Q17FD5_AEDAE Nuclear lim interactor-interacting factor (Nli-interacting factor) (Nli-if) OS=Aedes aegypti GN=AAEL003412 PE=4 SV=1 Length = 277
Score = 116 bits (290), Expect = 1e-24 Identities = 55/79 (69%), Positives = 66/79 (83%) Frame = +1
Query: 340 QYLLPPQKGKEIGLKTLVLDLDETLVHSSFKPVPNADFIIPVEIDNQVHQVYVLKRPGVD 519 +YLLP + ++ K +V+DLDETLVHSSFKP+PNADFI+PVEID VHQVYVLKRP VD Sbjct: 56 RYLLPQVRHSDMHRKCMVIDLDETLVHSSFKPIPNADFIVPVEIDGTVHQVYVLKRPHVD 115
Query: 520 QFLKSMGEKFEVVVFTASL 576 +FLK MGE +E V+FTASL Sbjct: 116 EFLKKMGELYECVLFTASL 134
>tr|B4KYH7|B4KYH7_DROMO GI13418 OS=Drosophila mojavensis GN=GI13418 PE=4 SV=1 Length = 331
Score = 116 bits (290), Expect = 1e-24 Identities = 54/83 (65%), Positives = 68/83 (81%) Frame = +1
Query: 328 PETVQYLLPPQKGKEIGLKTLVLDLDETLVHSSFKPVPNADFIIPVEIDNQVHQVYVLKR 507 P+ +YLLP + ++ K +V+DLDETLVHSSFKP+PNADFI+PVEID +HQVYVLKR Sbjct: 70 PDQQRYLLPQIRHSDMHKKCMVIDLDETLVHSSFKPIPNADFIVPVEIDGTIHQVYVLKR 129
Query: 508 PGVDQFLKSMGEKFEVVVFTASL 576 P VD+FL+ MGE +E V+FTASL Sbjct: 130 PHVDEFLQKMGELYECVLFTASL 152
>tr|Q75FA0|Q75FA0_ASHGO AAL158Wp OS=Ashbya gossypii GN=AAL158W PE=4 SV=1 Length = 478
Score = 116 bits (290), Expect = 1e-24 Identities = 58/77 (75%), Positives = 66/77 (85%) Frame = +1
Query: 346 LLPPQKGKEIGLKTLVLDLDETLVHSSFKPVPNADFIIPVEIDNQVHQVYVLKRPGVDQF 525 LLPPQ+ + G K LVLDLDETLVHSSFK + ADF+IPVEIDNQVH VYV+KRPGVD+F Sbjct: 297 LLPPQRPEFRGRKCLVLDLDETLVHSSFKYLHTADFVIPVEIDNQVHNVYVIKRPGVDEF 356
Query: 526 LKSMGEKFEVVVFTASL 576 LK +GE FEVVVFTAS+ Sbjct: 357 LKRVGELFEVVVFTASV 373
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