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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK963038
Clone id TST39A01NGRL0015_H10
Library
Length 607
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_H10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GATGGGAGCAACCCCCATGGGCAGCGCTTGATATAGTGGCTTGGAGGAAATGAGGGCTGG
GTGGGCCTGAGCTCTAGGGCTGGTCTATACAGAGTGGACCAGGCCGTTGCGGAGAGCTTC
ATGAAGTTCCATGGGGTTCCCCAATAGGTAGCGCTTGATATAGTGGGTTGCAGGAAATGA
GGGCTGGGTGGGCCTTAGCTCTAAGGCTGGTCTGTACAGAATGGACCAGGCCGTTGCGGA
GAGCTTCATGAAGTTCCATGGGTTCCCCCCGCCGCCCCGGAAAGGGAGAGGGGGTGAGTT
CACGACAGAGTGAGAGGACGACAAGCTCAGTGGCAAGCGCAGATGGAAAAGGGGAAAGCA
ATAGGGCAGAACATGCAAGCCGTACGGTGCATGCAGACACAGACACCTCGGTTAGAGAGC
CCCTCTCGCCATCATCATAGCCGCTGCTGGATAGATTCCAGAGGGGACCTTGAAATAATC
AAGCTTTTTTCCAAACACAGTTGTGCATTATCTGCTGAATATGTAGGGCACACTGTGGCC
TCGTTTGATCGTGTTTTGTACTCCTTGTTGCCCGCACTCCTCATAGTCTTGCCTGTTTGC
TTCTGCA
■■Homology search results ■■ -
sp_hit_id Q1LXZ7
Definition sp|Q1LXZ7|IQCH_DANRE IQ motif-containing protein H OS=Danio rerio
Align length 41
Score (bit) 33.9
E-value 0.67
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963038|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_H10, 5'
         (607 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1LXZ7|IQCH_DANRE IQ motif-containing protein H OS=Danio reri...    34   0.67 
sp|Q8MSX1|ENC_DROME Protein encore OS=Drosophila melanogaster GN...    33   1.1  
sp|Q6B9X6|VWKA_DICDI Alpha-protein kinase vwkA OS=Dictyostelium ...    32   1.9  
sp|P49952|WT1_RAT Wilms tumor protein homolog OS=Rattus norvegic...    32   2.5  
sp|P22561|WT1_MOUSE Wilms tumor protein homolog OS=Mus musculus ...    32   2.5  
sp|Q61247|A2AP_MOUSE Alpha-2-antiplasmin OS=Mus musculus GN=Serp...    32   3.3  
sp|Q9CCW6|ISPD_MYCLE 2-C-methyl-D-erythritol 4-phosphate cytidyl...    32   3.3  
sp|Q8BUV6|LSM11_MOUSE U7 snRNA-associated Sm-like protein LSm11 ...    31   4.3  
sp|P28800|A2AP_BOVIN Alpha-2-antiplasmin OS=Bos taurus GN=SERPIN...    30   9.6  

>sp|Q1LXZ7|IQCH_DANRE IQ motif-containing protein H OS=Danio rerio
           GN=iqch PE=4 SV=1
          Length = 1059

 Score = 33.9 bits (76), Expect = 0.67
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 220 SVQTSLRAKAHPALISCNPLYQALPIGEPHGTS*SSPQRPG 98
           S++   +  AHP L++  P Y+ALPI  PH +    P  PG
Sbjct: 77  SIEEPEKKTAHPKLVTWQPPYEALPIAHPHRSPIPGPS-PG 116


>sp|Q8MSX1|ENC_DROME Protein encore OS=Drosophila melanogaster GN=enc
            PE=1 SV=2
          Length = 1818

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 23/62 (37%), Positives = 28/62 (45%)
 Frame = -1

Query: 190  HPALISCNPLYQALPIGEPHGTS*SSPQRPGPLCIDQP*SSGPPSPHFLQATISSAAHGG 11
            H ALI+  P Y A       G S S+P  P       P  S PP+P+   +  SSA  GG
Sbjct: 1360 HHALITAAPFYPANGGNMDQGASQSAPSTPAAPGRQAPLFSTPPAPNNGSSGSSSAGGGG 1419

Query: 10   CS 5
             S
Sbjct: 1420 NS 1421


>sp|Q6B9X6|VWKA_DICDI Alpha-protein kinase vwkA OS=Dictyostelium
           discoideum GN=vwkA PE=1 SV=1
          Length = 625

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +1

Query: 325 AQWQAQMEKGKAIGQNMQAVRCMQ---TQTPRLESPSRHHHSRCWIDSRGDLEIIKLFSK 495
           + W  Q  K KAI  ++Q V+  +      P + S        C +   G   IIK F  
Sbjct: 529 SHWTYQESKNKAIVVDIQGVKTSKGYLLTDPAIHSTDTLRFGSCNLGKPG---IIKFFQS 585

Query: 496 HSCALSAEYVGHTVASF 546
           H C    + +G T+ SF
Sbjct: 586 HKCNQHCKKLGLTIPSF 602


>sp|P49952|WT1_RAT Wilms tumor protein homolog OS=Rattus norvegicus
           GN=Wt1 PE=2 SV=1
          Length = 448

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 161 ISSATYWGTPWNFMKLSATAWSTLYRPALELRPTQPSFPPSHYIKRCP-WG 12
           +S A  W    +F    A+A+ +L  PA    P  P  PP  +IK+ P WG
Sbjct: 28  VSGARQWAPVLDFAPPGASAYGSLGGPAPPPAPPPPPPPPHSFIKQEPSWG 78


>sp|P22561|WT1_MOUSE Wilms tumor protein homolog OS=Mus musculus
           GN=Wt1 PE=1 SV=1
          Length = 449

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 161 ISSATYWGTPWNFMKLSATAWSTLYRPALELRPTQPSFPPSHYIKRCP-WG 12
           +S A  W    +F    A+A+ +L  PA    P  P  PP  +IK+ P WG
Sbjct: 29  VSGARQWAPVLDFAPPGASAYGSLGGPAPPPAPPPPPPPPHSFIKQEPSWG 79


>sp|Q61247|A2AP_MOUSE Alpha-2-antiplasmin OS=Mus musculus
           GN=Serpinf2 PE=1 SV=1
          Length = 491

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 131 WNFMKLSAT-AWSTLYRPALELRPTQPSFPPSH 36
           WN  ++ A   W TLY P+L+ RPT+   P  H
Sbjct: 308 WNVSEVLANLTWDTLYHPSLQERPTKVWLPKLH 340


>sp|Q9CCW6|ISPD_MYCLE 2-C-methyl-D-erythritol 4-phosphate
           cytidylyltransferase OS=Mycobacterium leprae GN=ispD
           PE=3 SV=1
          Length = 241

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
 Frame = -1

Query: 313 SLCRELTPSPFPGRRGEP--MELHEALR----NGLVHSVQTSLRAKAHPALISCNPLYQA 152
           S+C+ L   P P R G P  + +H+A R      L+  V  +LRA  H A++   PL   
Sbjct: 94  SVCQALATLPAPSRVGAPEFILVHDAARALTPARLIVRVVDALRA-GHTAVVPALPLSDT 152

Query: 151 LPIGEPHGTS*SSPQRPGPLCIDQP 77
           +   + +G    +P R G   +  P
Sbjct: 153 IKAVDANGMVLGTPARVGLRAVQTP 177


>sp|Q8BUV6|LSM11_MOUSE U7 snRNA-associated Sm-like protein LSm11
           OS=Mus musculus GN=Lsm11 PE=2 SV=1
          Length = 361

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 300 SRQSERTTSSVASADGKGESNRAEH-ASRTVHADTDTSVRE 419
           SR S+ +T  VAS  G+G+++R+ H  SR+V +    S RE
Sbjct: 252 SRYSQTSTWKVASVWGRGDTDRSSHRRSRSVPSSLQASARE 292


>sp|P28800|A2AP_BOVIN Alpha-2-antiplasmin OS=Bos taurus GN=SERPINF2
           PE=1 SV=2
          Length = 492

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 258 WNFMKLSAT-AWSILYRPALELRPTQPSFPATH 163
           WN  ++ A   W IL++P+L  RPT+   P  H
Sbjct: 309 WNASQVLANLTWDILHQPSLSERPTKVQLPKLH 341
tr_hit_id A5WW09
Definition tr|A5WW09|A5WW09_DANRE Novel protein similar to autism susceptibility candidate 2 (Auts2) (Fragment) OS=Danio rerio
Align length 104
Score (bit) 42.0
E-value 0.028
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK963038|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_H10, 5'
         (607 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5WW09|A5WW09_DANRE Novel protein similar to autism susceptib...    42   0.028
tr|A9H6U3|A9H6U3_GLUDA Putative uncharacterized protein OS=Gluco...    35   2.6  
tr|B1WB87|B1WB87_DANRE Si:dkey-246a16.2 protein OS=Danio rerio G...    34   7.5  
tr|B4HTU9|B4HTU9_DROSE GM14591 OS=Drosophila sechellia GN=GM1459...    34   7.5  
tr|Q08QN6|Q08QN6_STIAU Putative uncharacterized protein OS=Stigm...    33   9.8  
tr|A6C976|A6C976_9PLAN Putative uncharacterized protein OS=Planc...    33   9.9  

>tr|A5WW09|A5WW09_DANRE Novel protein similar to autism
           susceptibility candidate 2 (Auts2) (Fragment) OS=Danio
           rerio GN=DKEY-69H6.1-001 PE=4 SV=1
          Length = 867

 Score = 42.0 bits (97), Expect = 0.028
 Identities = 30/104 (28%), Positives = 39/104 (37%), Gaps = 15/104 (14%)
 Frame = -1

Query: 292 PSPFPGRRGEPMELHEALRNGLVHSVQTSLRAK---------------AHPALISCNPLY 158
           P P P +  E  +  E     L+H V+  ++ K               A P      P +
Sbjct: 552 PQPLPIKENE-RDRKETSSGDLLHKVKNDMKIKEEHKEDQDVMVVGSEAAPKPQISLPSH 610

Query: 157 QALPIGEPHGTS*SSPQRPGPLCIDQP*SSGPPSPHFLQATISS 26
           Q  PI  PH      P  P P C D P   G P PH L  T+S+
Sbjct: 611 QTTPIVHPHPALSHQPPPPSPRCSDPPSIHGVPMPHSLPLTLSA 654


>tr|A9H6U3|A9H6U3_GLUDA Putative uncharacterized protein
           OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 /
           DSM 5601 / PAl5) GN=GDI3606 PE=4 SV=1
          Length = 479

 Score = 35.4 bits (80), Expect = 2.6
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = +1

Query: 265 PPAAPERERG*VHDRVRGRQAQWQAQMEKGKAIGQNMQAVRCMQTQTPRLESPSRHHHSR 444
           P A  +  RG V+DR+  R+ +   +   G   G    A+RC  T +PR ++     H R
Sbjct: 361 PGADRQPSRG-VNDRLPARERRSLHRQSPGIGNGAP-HAMRCSDTASPRTDAGGLPDHFR 418

Query: 445 CWIDSRG 465
           CW   RG
Sbjct: 419 CWAPDRG 425


>tr|B1WB87|B1WB87_DANRE Si:dkey-246a16.2 protein OS=Danio rerio
           GN=si:dkey-246a16.2 PE=2 SV=1
          Length = 1079

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 220 SVQTSLRAKAHPALISCNPLYQALPIGEPHGTS*SSPQRPG 98
           S++   +  AHP L++  P Y+ALPI  PH +    P  PG
Sbjct: 77  SIEEPEKKTAHPKLVTWQPPYEALPIAHPHRSPIPGPS-PG 116


>tr|B4HTU9|B4HTU9_DROSE GM14591 OS=Drosophila sechellia GN=GM14591
            PE=4 SV=1
          Length = 1932

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 23/62 (37%), Positives = 28/62 (45%)
 Frame = -1

Query: 190  HPALISCNPLYQALPIGEPHGTS*SSPQRPGPLCIDQP*SSGPPSPHFLQATISSAAHGG 11
            H ALI+  P Y A       G S S+P  P       P  S PP+P+   +  SSA  GG
Sbjct: 1472 HHALITAGPFYPANGGNMDQGASQSAPSTPAAPGRQAPLFSTPPAPNNGSSGSSSAGGGG 1531

Query: 10   CS 5
             S
Sbjct: 1532 NS 1533


>tr|Q08QN6|Q08QN6_STIAU Putative uncharacterized protein
           OS=Stigmatella aurantiaca DW4/3-1 GN=STIAU_7132 PE=4
           SV=1
          Length = 421

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = -1

Query: 211 TSLRAKAHPALISCNPLYQALPIGEPHGTS*SSPQRPGPLCIDQP*SSG---PPSPHFLQ 41
           TS R+   P++ S  PL  A+P   P G+S S   RP P C+  P S G   PPS   + 
Sbjct: 161 TSSRSSFPPSM-SWTPLSTAIPRPTPRGSS-SEATRPTP-CLTTPRSRGPRSPPSAASIS 217

Query: 40  ATISSAAHGGCSH 2
            T  S   G  SH
Sbjct: 218 TTRRSRIPGWTSH 230


>tr|A6C976|A6C976_9PLAN Putative uncharacterized protein
           OS=Planctomyces maris DSM 8797 GN=PM8797T_14901 PE=4
           SV=1
          Length = 1035

 Score = 33.5 bits (75), Expect = 9.9
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
 Frame = +3

Query: 81  WSIQSGPGRCGELHEV------PWGSPIGSA*YSGLQEMRAGW 191
           W I +GPGR  + HE       P+G P GS     L +M  GW
Sbjct: 557 WGIDAGPGRQNQPHEAVFRAEKPFGYPEGSRLTISLVQMHGGW 599