DK962998 |
Clone id |
TST39A01NGRL0015_F18 |
Library |
TST39 |
Length |
308 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_F18. 5' end sequence. |
Accession |
DK962998 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
ATCGAGGGCGGGCTTCGGGGTTGCTGCACAAACCCTAGTCGAAGGTAAGCTTGAGCTTTG GGTCTGTTAGCGATGGGGAGGGTCATCACAGGCCAAAGGAAGGGAGCAGGCTCGATCTTG ACAGCCCACACACACTGGCTCAAGGGCCCTGCTCGTTTTACATCTCTATACTACTCAAAA AGTAATGGGTACCTAAGGGGTGTCGTCTCCGACATTGTTCACGAATCTGGAATAGGATCA CCTCTCTGCACGGTGACATTCCGCCACCCCTTCCGCTTTAAACGCCAAAAAGAGCGCTTC ATTGCTGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P46286 |
Definition |
sp|P46286|RL81_ARATH 60S ribosomal protein L8-1 OS=Arabidopsis thaliana |
Align length |
75 |
Score (bit) |
105.0 |
E-value |
7.0e-23 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RZ45 |
Definition |
tr|A9RZ45|A9RZ45_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
75 |
Score (bit) |
117.0 |
E-value |
4.0e-25 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK962998|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0015_F18, 5' (308 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RZ45|A9RZ45_PHYPA Predicted protein OS=Physcomitrella paten... 117 4e-25 tr|Q2QNF3|Q2QNF3_ORYSJ Os12g0567700 protein OS=Oryza sativa subs... 106 7e-22 tr|A7P133|A7P133_VITVI Chromosome chr19 scaffold_4, whole genome... 106 7e-22 tr|A2ZLS7|A2ZLS7_ORYSI Putative uncharacterized protein OS=Oryza... 106 7e-22 tr|B6TGT0|B6TGT0_MAIZE 60S ribosomal protein L2 OS=Zea mays PE=2... 105 9e-22 tr|B4FJS6|B4FJS6_MAIZE Putative uncharacterized protein OS=Zea m... 105 9e-22 tr|B4F9R4|B4F9R4_MAIZE 60S ribosomal protein L2 OS=Zea mays PE=2... 105 9e-22 tr|B6TIQ9|B6TIQ9_MAIZE 60S ribosomal protein L2 OS=Zea mays PE=2... 105 1e-21 tr|A9PBZ5|A9PBZ5_POPTR Putative uncharacterized protein OS=Popul... 105 1e-21 tr|Q2HRD6|Q2HRD6_MEDTR Translation protein SH3-like OS=Medicago ... 105 1e-21 tr|A7QDZ9|A7QDZ9_VITVI Chromosome chr4 scaffold_83, whole genome... 104 2e-21 tr|A5AW13|A5AW13_VITVI Putative uncharacterized protein (Chromos... 104 2e-21 tr|A9PCT0|A9PCT0_POPTR Putative uncharacterized protein OS=Popul... 103 3e-21 tr|Q6EMI5|Q6EMI5_BRAJU Ribosomal protein L2 (Fragment) OS=Brassi... 102 7e-21 tr|Q2XTD6|Q2XTD6_SOLTU Ribosomal protein L2-like OS=Solanum tube... 102 7e-21 tr|Q41960|Q41960_ARATH 60S ribosomal protein KD4/L2 (Fragment) O... 100 4e-20 tr|Q9FEZ7|Q9FEZ7_SOYBN Ribosomal protein L2 OS=Glycine max GN=rp... 97 5e-19 tr|A7PXN6|A7PXN6_VITVI Chromosome chr12 scaffold_36, whole genom... 96 9e-19 tr|B8MBP1|B8MBP1_9EURO 60S ribosomal protein L8, putative OS=Tal... 92 1e-17 tr|B2WK16|B2WK16_PYRTR 60S ribosomal protein L2 OS=Pyrenophora t... 91 2e-17 tr|Q4WTW7|Q4WTW7_ASPFU 60S ribosomal protein L8, putative OS=Asp... 90 6e-17 tr|B0Y3E2|B0Y3E2_ASPFC 60S ribosomal protein L8, putative OS=Asp... 90 6e-17 tr|Q7RVQ9|Q7RVQ9_NEUCR 60S ribosomal protein L2 OS=Neurospora cr... 89 1e-16 tr|Q1DUH9|Q1DUH9_COCIM Putative uncharacterized protein OS=Cocci... 89 1e-16 tr|Q0V228|Q0V228_PHANO Putative uncharacterized protein OS=Phaeo... 89 1e-16 tr|Q0CA88|Q0CA88_ASPTN 60S ribosomal protein L2 OS=Aspergillus t... 89 1e-16 tr|B6QG48|B6QG48_PENMA 60S ribosomal protein L8, putative OS=Pen... 89 1e-16 tr|B6QG47|B6QG47_PENMA 60S ribosomal protein L8, putative OS=Pen... 89 1e-16 tr|B5XFI9|B5XFI9_SALSA 60S ribosomal protein L2 OS=Salmo salar G... 89 1e-16 tr|A6RFU9|A6RFU9_AJECN 60S ribosomal protein L2 OS=Ajellomyces c... 89 1e-16
>tr|A9RZ45|A9RZ45_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_161945 PE=4 SV=1 Length = 260
Score = 117 bits (292), Expect = 4e-25 Identities = 54/75 (72%), Positives = 64/75 (85%) Frame = +1
Query: 82 VITGQRKGAGSILTAHTHWLKGPARFTSLYYSKSNGYLRGVVSDIVHESGIGSPLCTVTF 261 VI QRKGAGSI +HTH KGPA+F SL Y++ NGY++GVVS++VH+SG G+PLC VTF Sbjct: 4 VIRAQRKGAGSIFRSHTHRRKGPAQFRSLDYAERNGYIKGVVSEVVHDSGRGAPLCKVTF 63
Query: 262 RHPFRFKRQKERFIA 306 RHPFRFKRQKERFIA Sbjct: 64 RHPFRFKRQKERFIA 78
>tr|Q2QNF3|Q2QNF3_ORYSJ Os12g0567700 protein OS=Oryza sativa subsp. japonica GN=Os12g0567700 PE=4 SV=1 Length = 261
Score = 106 bits (264), Expect = 7e-22 Identities = 48/75 (64%), Positives = 59/75 (78%) Frame = +1
Query: 82 VITGQRKGAGSILTAHTHWLKGPARFTSLYYSKSNGYLRGVVSDIVHESGIGSPLCTVTF 261 VI QRKGAGS+ +HTH KGPARF SL + + NGYL+GVV+DI+H+ G G+PL VTF Sbjct: 4 VIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTF 63
Query: 262 RHPFRFKRQKERFIA 306 RHPFR+K QKE F+A Sbjct: 64 RHPFRYKHQKELFVA 78
>tr|A7P133|A7P133_VITVI Chromosome chr19 scaffold_4, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00027466001 PE=4 SV=1 Length = 260
Score = 106 bits (264), Expect = 7e-22 Identities = 48/75 (64%), Positives = 59/75 (78%) Frame = +1
Query: 82 VITGQRKGAGSILTAHTHWLKGPARFTSLYYSKSNGYLRGVVSDIVHESGIGSPLCTVTF 261 VI QRKGAGS+ +HTH KGPARF SL + + NGYL+GVV+DI+H+ G G+PL VTF Sbjct: 4 VIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLARVTF 63
Query: 262 RHPFRFKRQKERFIA 306 RHPFR+K QKE F+A Sbjct: 64 RHPFRYKHQKELFVA 78
>tr|A2ZLS7|A2ZLS7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_38771 PE=4 SV=1 Length = 261
Score = 106 bits (264), Expect = 7e-22 Identities = 48/75 (64%), Positives = 59/75 (78%) Frame = +1
Query: 82 VITGQRKGAGSILTAHTHWLKGPARFTSLYYSKSNGYLRGVVSDIVHESGIGSPLCTVTF 261 VI QRKGAGS+ +HTH KGPARF SL + + NGYL+GVV+DI+H+ G G+PL VTF Sbjct: 4 VIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTF 63
Query: 262 RHPFRFKRQKERFIA 306 RHPFR+K QKE F+A Sbjct: 64 RHPFRYKHQKELFVA 78
>tr|B6TGT0|B6TGT0_MAIZE 60S ribosomal protein L2 OS=Zea mays PE=2 SV=1 Length = 261
Score = 105 bits (263), Expect = 9e-22 Identities = 47/75 (62%), Positives = 59/75 (78%) Frame = +1
Query: 82 VITGQRKGAGSILTAHTHWLKGPARFTSLYYSKSNGYLRGVVSDIVHESGIGSPLCTVTF 261 VI QRKGAGS+ +HTH KGPARF SL + + NGYL+GVV+D++H+ G G+PL VTF Sbjct: 4 VIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTF 63
Query: 262 RHPFRFKRQKERFIA 306 RHPFR+K QKE F+A Sbjct: 64 RHPFRYKHQKELFVA 78
>tr|B4FJS6|B4FJS6_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 160
Score = 105 bits (263), Expect = 9e-22 Identities = 47/75 (62%), Positives = 59/75 (78%) Frame = +1
Query: 82 VITGQRKGAGSILTAHTHWLKGPARFTSLYYSKSNGYLRGVVSDIVHESGIGSPLCTVTF 261 VI QRKGAGS+ +HTH KGPARF SL + + NGYL+GVV+D++H+ G G+PL VTF Sbjct: 4 VIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTF 63
Query: 262 RHPFRFKRQKERFIA 306 RHPFR+K QKE F+A Sbjct: 64 RHPFRYKHQKELFVA 78
>tr|B4F9R4|B4F9R4_MAIZE 60S ribosomal protein L2 OS=Zea mays PE=2 SV=1 Length = 260
Score = 105 bits (263), Expect = 9e-22 Identities = 47/75 (62%), Positives = 59/75 (78%) Frame = +1
Query: 82 VITGQRKGAGSILTAHTHWLKGPARFTSLYYSKSNGYLRGVVSDIVHESGIGSPLCTVTF 261 VI QRKGAGS+ +HTH KGPARF SL + + NGYL+GVV+D++H+ G G+PL VTF Sbjct: 4 VIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTF 63
Query: 262 RHPFRFKRQKERFIA 306 RHPFR+K QKE F+A Sbjct: 64 RHPFRYKHQKELFVA 78
>tr|B6TIQ9|B6TIQ9_MAIZE 60S ribosomal protein L2 OS=Zea mays PE=2 SV=1 Length = 261
Score = 105 bits (262), Expect = 1e-21 Identities = 47/75 (62%), Positives = 59/75 (78%) Frame = +1
Query: 82 VITGQRKGAGSILTAHTHWLKGPARFTSLYYSKSNGYLRGVVSDIVHESGIGSPLCTVTF 261 VI QRKGAGS+ +HTH KGPARF SL + + NGYL+GVV+D++H+ G G+PL VTF Sbjct: 4 VIHAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTF 63
Query: 262 RHPFRFKRQKERFIA 306 RHPFR+K QKE F+A Sbjct: 64 RHPFRYKHQKELFVA 78
>tr|A9PBZ5|A9PBZ5_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 260
Score = 105 bits (262), Expect = 1e-21 Identities = 47/75 (62%), Positives = 60/75 (80%) Frame = +1
Query: 82 VITGQRKGAGSILTAHTHWLKGPARFTSLYYSKSNGYLRGVVSDIVHESGIGSPLCTVTF 261 VI QRKGAGS+ +HTH KGPARF SL + + NGYL+GVV++I+H+ G G+PL VTF Sbjct: 4 VIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTF 63
Query: 262 RHPFRFKRQKERFIA 306 RHPFR+K+QKE F+A Sbjct: 64 RHPFRYKKQKELFVA 78
>tr|Q2HRD6|Q2HRD6_MEDTR Translation protein SH3-like OS=Medicago truncatula GN=MtrDRAFT_AC159144g11v2 PE=4 SV=1 Length = 155
Score = 105 bits (261), Expect = 1e-21 Identities = 46/75 (61%), Positives = 60/75 (80%) Frame = +1
Query: 82 VITGQRKGAGSILTAHTHWLKGPARFTSLYYSKSNGYLRGVVSDIVHESGIGSPLCTVTF 261 VI QRKGAGS+ +HTH KGPARF SL + + NGYL+GVV+D++H+ G G+PL VTF Sbjct: 4 VIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTF 63
Query: 262 RHPFRFKRQKERFIA 306 RHPFR+++QKE F+A Sbjct: 64 RHPFRYQKQKELFVA 78
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