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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962942
Clone id TST39A01NGRL0015_D08
Library
Length 591
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0015_D08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
ATTCTTCATGAAACAAACCGGATGCGATTCTGTGACGACAAACTACTTCATGAGCCTGCT
GACCTCCATATCCTCGAGAAAAAGATTCCTGAAGGCCTCGGACTACATGGGAGCGTTGCT
CCGCTTGTGAAATCAAGAGTCACACCCTTAGAACATATCTATGCATCTATGAGAGCCCAT
GGTATTTTTGACACTATCCAATATTGCAACAATTTACCTCCTCCCTATCAAAATAACATC
AAGAATAGACGTCTCGCACACGACGATGCATTTAATGCCCCTGATTGTCTTGGATTTACA
TACATCAAGCACATTGAATCCGGAACACATTGATATGTACGACGTCACGGTTGGCACTGA
GCAAACCCTCCATAACATTCACGGGTTTTACTGTTTCTGTATTGATGCAGCCTACTTTGG
AAGGTTCTATACTTAGGCTGGAAAATATTCTCTAACATTTTCTGTGATTGATGAAGGGAG
TCTTGACATAATCTTGGAAAAGACATTGGAATTGAATGTTTTACCGTCCGACAAGGTTTG
CAGATGGGTATTGAAAGATGTGGATGGCTCGGATATTCCTATTGCTAGGCT
■■Homology search results ■■ -
sp_hit_id P09287
Definition sp|P09287|UL25_VZVD Virion gene 34 protein OS=Varicella-zoster virus (strain Dumas)
Align length 70
Score (bit) 30.4
E-value 6.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962942|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_D08, 5'
         (578 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P09287|UL25_VZVD Virion gene 34 protein OS=Varicella-zoster v...    30   6.7  
sp|Q6AZI2|CCD47_XENLA Coiled-coil domain-containing protein 47 O...    30   8.7  

>sp|P09287|UL25_VZVD Virion gene 34 protein OS=Varicella-zoster
           virus (strain Dumas) GN=34 PE=3 SV=1
          Length = 579

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +1

Query: 310 EHIDMYDVTVGTEQTLHNIHGFYCFCIDAAYFGRFYT*AGKYSLTFSVIDEGSL--DIIL 483
           EH+  Y  T     T H     Y FC D     +F+   G+Y       D+G+L    ++
Sbjct: 259 EHLPEYTETFVNYMTTHENKNSYQFCYDRLPRDQFHARGGRY-------DQGALTSHSVM 311

Query: 484 EKTLELNVLP 513
           +  + L VLP
Sbjct: 312 DALIRLQVLP 321


>sp|Q6AZI2|CCD47_XENLA Coiled-coil domain-containing protein 47
           OS=Xenopus laevis GN=ccdc47 PE=2 SV=1
          Length = 489

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 205 LLPIKITSRIDVSHTTMHLMPLIVLDLHTSSTLNPEHIDMYDVTVGTEQTL 357
           L+ +K   R D+ +    +M  +   +    T+N E +D Y  +VGT +TL
Sbjct: 225 LIQLKFIKRQDLLNVLSRMMRPVCDQVQIKVTMNDEDMDTYVFSVGTRKTL 275
tr_hit_id Q6NY96
Definition tr|Q6NY96|Q6NY96_DANRE H2.0-like homeo box 1 (Drosophila) OS=Danio rerio
Align length 47
Score (bit) 34.3
E-value 5.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962942|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0015_D08, 5'
         (578 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6NY96|Q6NY96_DANRE H2.0-like homeo box 1 (Drosophila) OS=Dan...    34   5.1  
tr|Q7UE45|Q7UE45_RHOBA Probable two-component response regulator...    34   6.7  
tr|B8JMG4|B8JMG4_DANRE H2.0-like homeo box 1 (Drosophila) (Fragm...    33   8.7  
tr|B8JMG3|B8JMG3_DANRE H2.0-like homeo box 1 (Drosophila) OS=Dan...    33   8.7  

>tr|Q6NY96|Q6NY96_DANRE H2.0-like homeo box 1 (Drosophila) OS=Danio
           rerio GN=hlx1 PE=2 SV=1
          Length = 327

 Score = 34.3 bits (77), Expect = 5.1
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 90  LHGSVAPLVKSRVTPLEHIYASMRAHGIFDTIQYCNNLPPPYQNNIK 230
           +H S +PL  S VTP   ++ +   HGI  T +   N PPP   ++K
Sbjct: 36  VHSSGSPLRPSPVTPDARLHPAYHRHGIHLTSRAAINAPPPTSKDLK 82


>tr|Q7UE45|Q7UE45_RHOBA Probable two-component response regulator
           OS=Rhodopirellula baltica GN=RB11594 PE=4 SV=1
          Length = 168

 Score = 33.9 bits (76), Expect = 6.7
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = +3

Query: 24  DKLLHEPADLHILEKKIPEGLGL 92
           D+L HEP DL IL+ K+PEG GL
Sbjct: 81  DRLRHEPIDLLILDTKLPEGDGL 103


>tr|B8JMG4|B8JMG4_DANRE H2.0-like homeo box 1 (Drosophila)
           (Fragment) OS=Danio rerio GN=hlx1 PE=4 SV=1
          Length = 280

 Score = 33.5 bits (75), Expect = 8.7
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 90  LHGSVAPLVKSRVTPLEHIYASMRAHGIFDTIQYCNNLPPPYQNNIK 230
           +H S +PL  S VTP   ++ +   HGI  T +   N PPP   ++K
Sbjct: 65  VHSSGSPLRPSPVTPDARLHPAYLRHGIHLTSRAAINAPPPTSKDLK 111


>tr|B8JMG3|B8JMG3_DANRE H2.0-like homeo box 1 (Drosophila) OS=Danio
           rerio GN=hlx1 PE=4 SV=1
          Length = 356

 Score = 33.5 bits (75), Expect = 8.7
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 90  LHGSVAPLVKSRVTPLEHIYASMRAHGIFDTIQYCNNLPPPYQNNIK 230
           +H S +PL  S VTP   ++ +   HGI  T +   N PPP   ++K
Sbjct: 65  VHSSGSPLRPSPVTPDARLHPAYLRHGIHLTSRAAINAPPPTSKDLK 111