DK962825 |
Clone id |
TST39A01NGRL0014_O11 |
Library |
TST39 |
Length |
561 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_O11. 5' end sequence. |
Accession |
DK962825 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GGCCGCACAACTTTGTACAAGAAAGTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTCCTCTTCCAATTTAATCTGATTGGATTTGCCCTCTTGCTATCAACTTTTCTGAGTAGC TCAGCATCAGCAAGGACAGTTGGCTTCGGTGTCTTTATTATTGGTTTTCTTGCACAGTTG GTCACTGCGTTTGGTTTTCCTTATGACGAGCAATTCTCGAAAACGTATCAGGCCATATGG TCAGTGTTCCCTCCAAACCTACTTGCTATTGGCTTGCAATATCTTGGAGATGCTACATCC ACAAAAGAAGCACGCGGTATTAGCTGGGCAGGTCGCACAAGGTGCTCAGCTGCAACCCCT GATTGTGTCATAACAATGGATGAAATCTATAGATGGCTCACGGCAACTTTTTTTGTCTGG TTTTTCCTTGCGCTGTACTTTGACAATGTTCTAAAAGATGTCAACGGTGTAAGTAAGCCC TGGTATTACTTCCTTTTGCCATCTTACTGGACGGGGAGATCATCCAGCCACGCAAATGGC GGTGCATGTTGTTGCACTGGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q84K47 |
Definition |
sp|Q84K47|ATHI_ARATH ABC2 homolog 1 OS=Arabidopsis thaliana |
Align length |
168 |
Score (bit) |
169.0 |
E-value |
9.0e-42 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9T1J1 |
Definition |
tr|A9T1J1|A9T1J1_PHYPA ATP-binding cassette transporter, subfamily A, member 2, group ATH protein PpABCA2 OS=Physcomitrella patens subsp. patens |
Align length |
167 |
Score (bit) |
197.0 |
E-value |
2.0e-49 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK962825|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0014_O11, 5' (499 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9T1J1|A9T1J1_PHYPA ATP-binding cassette transporter, subfami... 197 2e-49 tr|Q6ZIW1|Q6ZIW1_ORYSJ Os08g0398000 protein OS=Oryza sativa subs... 180 4e-44 tr|B8BAI3|B8BAI3_ORYSI Putative uncharacterized protein OS=Oryza... 180 4e-44 tr|A3BSV1|A3BSV1_ORYSJ Putative uncharacterized protein OS=Oryza... 180 4e-44 tr|A7QI66|A7QI66_VITVI Chromosome chr17 scaffold_101, whole geno... 179 5e-44 tr|A5C5E7|A5C5E7_VITVI Putative uncharacterized protein OS=Vitis... 174 3e-42 tr|A8JAP1|A8JAP1_CHLRE Predicted protein (Fragment) OS=Chlamydom... 86 1e-15 tr|B2RY21|B2RY21_MOUSE Abca12 protein OS=Mus musculus GN=Abca12 ... 54 5e-06 tr|B2RY11|B2RY11_MOUSE Abca12 protein OS=Mus musculus GN=Abca12 ... 54 5e-06 tr|A8J3J3|A8J3J3_CHLRE Predicted protein OS=Chlamydomonas reinha... 52 2e-05 tr|Q53S55|Q53S55_HUMAN Putative uncharacterized protein ABCA12 (... 51 3e-05 tr|Q5YG24|Q5YG24_XENTR Retinal-specific ATP transporter ABCA4 OS... 47 4e-04 tr|B6MHR4|B6MHR4_BRAFL Putative uncharacterized protein OS=Branc... 47 7e-04 tr|B2RU09|B2RU09_HUMAN ATP-binding cassette, sub-family A (ABC1)... 47 7e-04 tr|A7MBM9|A7MBM9_HUMAN ATP-binding cassette, sub-family A (ABC1)... 47 7e-04 tr|A9URT1|A9URT1_MONBE Predicted protein (Fragment) OS=Monosiga ... 45 0.001 tr|Q5F1L3|Q5F1L3_XENLA Retinal ABCA4 transporter OS=Xenopus laev... 44 0.003 tr|A8QBC6|A8QBC6_BRUMA ABC transporter family protein OS=Brugia ... 44 0.003 tr|Q23DB9|Q23DB9_TETTH ABC transporter family protein OS=Tetrahy... 43 0.007 tr|B6L1G3|B6L1G3_BRAFL Putative uncharacterized protein OS=Branc... 43 0.007 tr|B6L1E5|B6L1E5_BRAFL Putative uncharacterized protein OS=Branc... 43 0.007 tr|B6NEX9|B6NEX9_BRAFL Putative uncharacterized protein OS=Branc... 43 0.009 tr|Q4RWT7|Q4RWT7_TETNG Chromosome 15 SCAF14981, whole genome sho... 42 0.012 tr|Q6XBG2|Q6XBG2_MOUSE ATP-binding cassette transporter sub-fami... 42 0.012 tr|B6PHK8|B6PHK8_BRAFL Putative uncharacterized protein OS=Branc... 42 0.021 tr|Q4LE27|Q4LE27_HUMAN ABCA3 variant protein (Fragment) OS=Homo ... 42 0.021 tr|Q4SAP9|Q4SAP9_TETNG Chromosome undetermined SCAF14681, whole ... 41 0.036 tr|Q29I60|Q29I60_DROPS GA14368 OS=Drosophila pseudoobscura pseud... 41 0.036 tr|B4GWM4|B4GWM4_DROPE GL16575 OS=Drosophila persimilis GN=GL165... 41 0.036 tr|Q9JL37|Q9JL37_MOUSE ATP-binding cassette protein (Fragment) O... 40 0.061
>tr|A9T1J1|A9T1J1_PHYPA ATP-binding cassette transporter, subfamily A, member 2, group ATH protein PpABCA2 OS=Physcomitrella patens subsp. patens GN=ppabca2 PE=3 SV=1 Length = 962
Score = 197 bits (502), Expect = 2e-49 Identities = 93/167 (55%), Positives = 110/167 (65%), Gaps = 1/167 (0%) Frame = +2
Query: 2 LFQFNLIGXXXXXXXXXXXXXXXRTVGFGVFIIGFLAQLVTAFGFPYDEQFSKTYQAIWS 181 LFQ N+IG VGF VFIIGFL QLVT GFPYD++FSKT + +WS Sbjct: 327 LFQLNMIGLAFMVSTFVSKSTSATNVGFFVFIIGFLTQLVTIVGFPYDKKFSKTLRGLWS 386
Query: 182 VFPPNLLAIGLQYLGDATSTKEARGISWAGRTRCSAATPDCVITMDEIYRWLTATFFVWF 361 +FPPN+ A L YLG ATST + GI W R +CS + DCV+TM++IY WL ATFF+WF Sbjct: 387 LFPPNVFAAALNYLGQATSTAQDPGIQWKDRAKCSYRSEDCVLTMNDIYGWLIATFFIWF 446
Query: 362 FLALYFDNVLKDVNGVSKPWYYFLLPSYWTGRSSSHANGGACC-CTG 499 LA+YFDNV DVNGV KP +YFL PSYW G GG CC C+G Sbjct: 447 VLAIYFDNVFPDVNGVRKPCFYFLSPSYWLGEGVKLFEGGRCCNCSG 493
>tr|Q6ZIW1|Q6ZIW1_ORYSJ Os08g0398000 protein OS=Oryza sativa subsp. japonica GN=OJ1198_B10.9 PE=2 SV=1 Length = 968
Score = 180 bits (456), Expect = 4e-44 Identities = 81/160 (50%), Positives = 105/160 (65%) Frame = +2
Query: 2 LFQFNLIGXXXXXXXXXXXXXXXRTVGFGVFIIGFLAQLVTAFGFPYDEQFSKTYQAIWS 181 LFQ N++ TVGF +FIIGFL QLVT FGFPY + K Y+ IWS Sbjct: 317 LFQLNMLSFAFMISTFVTKAASATTVGFAIFIIGFLTQLVTTFGFPYSTSYQKYYRTIWS 376
Query: 182 VFPPNLLAIGLQYLGDATSTKEARGISWAGRTRCSAATPDCVITMDEIYRWLTATFFVWF 361 +FPP++ A L LG AT+T E +GISW R +C + DCVIT+D+IY+WL +TFF+WF Sbjct: 377 LFPPDVFAQALNILGKATATPEDKGISWNQRGQCQSFETDCVITIDDIYKWLISTFFLWF 436
Query: 362 FLALYFDNVLKDVNGVSKPWYYFLLPSYWTGRSSSHANGG 481 LA+YFDN++ +VNGV K +YFL+PSYWTG+ G Sbjct: 437 VLAIYFDNIIPNVNGVRKSVFYFLMPSYWTGKGGGKLQEG 476
>tr|B8BAI3|B8BAI3_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_29139 PE=4 SV=1 Length = 968
Score = 180 bits (456), Expect = 4e-44 Identities = 81/160 (50%), Positives = 105/160 (65%) Frame = +2
Query: 2 LFQFNLIGXXXXXXXXXXXXXXXRTVGFGVFIIGFLAQLVTAFGFPYDEQFSKTYQAIWS 181 LFQ N++ TVGF +FIIGFL QLVT FGFPY + K Y+ IWS Sbjct: 317 LFQLNMLSFAFMISTFVTKAASATTVGFAIFIIGFLTQLVTTFGFPYSTSYQKYYRTIWS 376
Query: 182 VFPPNLLAIGLQYLGDATSTKEARGISWAGRTRCSAATPDCVITMDEIYRWLTATFFVWF 361 +FPP++ A L LG AT+T E +GISW R +C + DCVIT+D+IY+WL +TFF+WF Sbjct: 377 LFPPDVFAQALNILGKATATPEDKGISWNQRGQCQSFETDCVITIDDIYKWLISTFFLWF 436
Query: 362 FLALYFDNVLKDVNGVSKPWYYFLLPSYWTGRSSSHANGG 481 LA+YFDN++ +VNGV K +YFL+PSYWTG+ G Sbjct: 437 VLAIYFDNIIPNVNGVRKSVFYFLMPSYWTGKGGGKLQEG 476
>tr|A3BSV1|A3BSV1_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_026123 PE=3 SV=1 Length = 974
Score = 180 bits (456), Expect = 4e-44 Identities = 81/160 (50%), Positives = 105/160 (65%) Frame = +2
Query: 2 LFQFNLIGXXXXXXXXXXXXXXXRTVGFGVFIIGFLAQLVTAFGFPYDEQFSKTYQAIWS 181 LFQ N++ TVGF +FIIGFL QLVT FGFPY + K Y+ IWS Sbjct: 317 LFQLNMLSFAFMISTFVTKAASATTVGFAIFIIGFLTQLVTTFGFPYSTSYQKYYRTIWS 376
Query: 182 VFPPNLLAIGLQYLGDATSTKEARGISWAGRTRCSAATPDCVITMDEIYRWLTATFFVWF 361 +FPP++ A L LG AT+T E +GISW R +C + DCVIT+D+IY+WL +TFF+WF Sbjct: 377 LFPPDVFAQALNILGKATATPEDKGISWNQRGQCQSFETDCVITIDDIYKWLISTFFLWF 436
Query: 362 FLALYFDNVLKDVNGVSKPWYYFLLPSYWTGRSSSHANGG 481 LA+YFDN++ +VNGV K +YFL+PSYWTG+ G Sbjct: 437 VLAIYFDNIIPNVNGVRKSVFYFLMPSYWTGKGGGKLQEG 476
>tr|A7QI66|A7QI66_VITVI Chromosome chr17 scaffold_101, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00000113001 PE=3 SV=1 Length = 958
Score = 179 bits (455), Expect = 5e-44 Identities = 85/167 (50%), Positives = 105/167 (62%), Gaps = 1/167 (0%) Frame = +2
Query: 2 LFQFNLIGXXXXXXXXXXXXXXXRTVGFGVFIIGFLAQLVTAFGFPYDEQFSKTYQAIWS 181 LFQ N+IG +GF +FI GF +QLVT FGFPY F Y+ IWS Sbjct: 314 LFQLNMIGYAFMLSSFISKSSSSTIIGFCIFIFGFFSQLVTIFGFPYSNNFPNFYRIIWS 373
Query: 182 VFPPNLLAIGLQYLGDATSTKEARGISWAGRTRCSAATPDCVITMDEIYRWLTATFFVWF 361 +FPPNLLA L L DATST + GISW+ R C+ DCVIT+++IY WLTATFF+WF Sbjct: 374 LFPPNLLAEALSLLADATSTPQDPGISWSKRADCAPNDLDCVITINDIYIWLTATFFLWF 433
Query: 362 FLALYFDNVLKDVNGVSKPWYYFLLPSYWTGRSSSHA-NGGACCCTG 499 LA+YFDN++ + +GV K +YFL P YWTGR + GG C C G Sbjct: 434 LLAIYFDNIIPNSSGVRKSLFYFLKPGYWTGRGGNKVEEGGICSCIG 480
>tr|A5C5E7|A5C5E7_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033311 PE=3 SV=1 Length = 909
Score = 174 bits (440), Expect = 3e-42 Identities = 81/159 (50%), Positives = 101/159 (63%) Frame = +2
Query: 2 LFQFNLIGXXXXXXXXXXXXXXXRTVGFGVFIIGFLAQLVTAFGFPYDEQFSKTYQAIWS 181 LFQ N+IG +GF +FI GF +QLVT FGFPY F Y+ IWS Sbjct: 314 LFQLNMIGYAFMLSSFISKSSSSTIIGFCIFIFGFFSQLVTIFGFPYSNNFPNFYRIIWS 373
Query: 182 VFPPNLLAIGLQYLGDATSTKEARGISWAGRTRCSAATPDCVITMDEIYRWLTATFFVWF 361 +FPPNLLA L L DATST + GISW+ R C+ DCVIT+++IY WLTATFF+WF Sbjct: 374 LFPPNLLAEALSLLADATSTPQDPGISWSKRADCAPNDLDCVITINDIYIWLTATFFLWF 433
Query: 362 FLALYFDNVLKDVNGVSKPWYYFLLPSYWTGRSSSHANG 478 LA+YFDN++ + +GV K +YFL P YWTGR + G Sbjct: 434 LLAIYFDNIIPNSSGVRKSLFYFLKPGYWTGRGGNKVEG 472
>tr|A8JAP1|A8JAP1_CHLRE Predicted protein (Fragment) OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_121110 PE=3 SV=1 Length = 872
Score = 85.9 bits (211), Expect = 1e-15 Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 4/131 (3%) Frame = +2
Query: 77 VGFGVFIIGFLAQLVTAFGFPYDEQFSKTYQA----IWSVFPPNLLAIGLQYLGDATSTK 244 +GF +FI+G++ Q V FG PY + KT + I+S+ P +LLA G Q LG AT+ Sbjct: 325 LGFTIFIVGWIMQTVVLFGVPYTPDYYKTAGSAVTIIFSLLPWDLLAKGFQDLGAATNIA 384
Query: 245 EARGISWAGRTRCSAATPDCVITMDEIYRWLTATFFVWFFLALYFDNVLKDVNGVSKPWY 424 R + +CV++++ IY A + +F LA+YFDN++ + GVSKP+Y Sbjct: 385 NPDDQP-PYNPRQEYRSYECVMSLNTIYGIFIALWLGYFVLAVYFDNIVPNEFGVSKPFY 443
Query: 425 YFLLPSYWTGR 457 YFL P Y T R Sbjct: 444 YFLDPGYCTAR 454
>tr|B2RY21|B2RY21_MOUSE Abca12 protein OS=Mus musculus GN=Abca12 PE=2 SV=1 Length = 2595
Score = 53.5 bits (127), Expect = 5e-06 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 4/125 (3%) Frame = +2
Query: 95 IIGFLAQLVTAFGF----PYDEQFSKTYQAIWSVFPPNLLAIGLQYLGDATSTKEARGIS 262 +IG L ++ F F +++ S + S+ P + QY+ A ++ G+ Sbjct: 1174 LIGSLIYVIAFFPFIVLVTVEDELSYVIKVFMSLLSPTAFSYASQYI--ARYEEQGVGLQ 1231
Query: 263 WAGRTRCSAATPDCVITMDEIYRWLTATFFVWFFLALYFDNVLKDVNGVSKPWYYFLLPS 442 W + + D + + + A F++FF+A Y NV G++ PWY+ +LPS Sbjct: 1232 WENMYK--SPVQDDTTSFGWLCCLILADSFIYFFIAWYVRNVFPGTYGMAAPWYFPILPS 1289
Query: 443 YWTGR 457 YW R Sbjct: 1290 YWKER 1294
>tr|B2RY11|B2RY11_MOUSE Abca12 protein OS=Mus musculus GN=Abca12 PE=2 SV=1 Length = 2595
Score = 53.5 bits (127), Expect = 5e-06 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 4/125 (3%) Frame = +2
Query: 95 IIGFLAQLVTAFGF----PYDEQFSKTYQAIWSVFPPNLLAIGLQYLGDATSTKEARGIS 262 +IG L ++ F F +++ S + S+ P + QY+ A ++ G+ Sbjct: 1174 LIGSLIYVIAFFPFIVLVTVEDELSYVIKVFMSLLSPTAFSYASQYI--ARYEEQGVGLQ 1231
Query: 263 WAGRTRCSAATPDCVITMDEIYRWLTATFFVWFFLALYFDNVLKDVNGVSKPWYYFLLPS 442 W + + D + + + A F++FF+A Y NV G++ PWY+ +LPS Sbjct: 1232 WENMYK--SPVQDDTTSFGWLCCLILADSFIYFFIAWYVRNVFPGTYGMAAPWYFPILPS 1289
Query: 443 YWTGR 457 YW R Sbjct: 1290 YWKER 1294
>tr|A8J3J3|A8J3J3_CHLRE Predicted protein OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_174499 PE=4 SV=1 Length = 639
Score = 52.0 bits (123), Expect = 2e-05 Identities = 26/65 (40%), Positives = 34/65 (52%) Frame = +2
Query: 80 GFGVFIIGFLAQLVTAFGFPYDEQFSKTYQAIWSVFPPNLLAIGLQYLGDATSTKEARGI 259 GF +++ + QLV FGFPY + + I+S PP +L GL L AT GI Sbjct: 217 GFAAYVVCWALQLVVQFGFPYKPSVAPVWVGIFSCLPPCVLTKGLHDLATATLGDGTGGI 276
Query: 260 SWAGR 274 SWA R Sbjct: 277 SWANR 281
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