DK962769
Clone id TST39A01NGRL0014_M03
Library
Length 618
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_M03. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
TTGAGAGAGCGAGAGAGAAAGAGGGTTTTCTTCTTCCCGCTTCTCCACATACACTCACTC
CCCCTCCCAGCGCGTGGCGGCCGCTTCTGCTCCTGAAGTCTGCAGCTTCCGGCTCCATTT
TCGAGCTCGCCATTGTTCCTGTACCTTGCCCCTCTACAGAAATTCGGCTTATTGCGGCTT
CCATGGCTCTGGCTGAAGTGGTGGCCGCGGCGCCTGACTCGGCTCACCATACAGGTGATC
CGGTTCGGACTATGGGTGGTGGTTTCAAAGGGGACCTACCTCAGGAACATGTTTCCGACG
ACAAGAATGGGGATGCTACTCAGTTTAAAAGATTAGATGGAGCAGCTGAAGCGGCCAATG
CTGGCTATAGTATACCTGTCTTGGCAAGCTATGATGGAGGTGTGGGATGTGATACAAGAC
ACGTATTCTCTGGCATGCTTGCTGAGAATGGGCAGTCTATGTACTATGCCCCTGGTTATG
AGTTTCCACAGCAATCTCCTTATTGCTCACAGCCTCAAGGGGCTTACATGTCAAATATGG
GATCTGGAACAACGGGGTACTGTGGACCGCAGTATGGGCCTTATTATCAGCAGGTGCCAC
CTGGGCTTATGCAGTATT
■■Homology search results ■■ -
sp_hit_id Q9W4E2
Definition sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster
Align length 115
Score (bit) 33.9
E-value 0.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK962769|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_M03, 5'
(618 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=... 34 0.70
sp|Q68749|POLG_HCVBB Genome polyprotein OS=Hepatitis C virus gen... 33 0.90
sp|Q64347|CLCN1_MOUSE Chloride channel protein, skeletal muscle ... 31 4.5
sp|Q8AZM0|POLS_BSNV Structural polyprotein OS=Blotched snakehead... 31 4.5
sp|Q7XWS7|FH12_ORYSJ Formin-like protein 12 OS=Oryza sativa subs... 31 4.5
sp|Q54KT2|Y8896_DICDI Putative uncharacterized protein DDB_G0287... 31 5.9
sp|Q6UXD1|HRCT1_HUMAN Histidine-rich carboxyl terminus protein 1... 31 5.9
sp|Q6ZU45|YA021_HUMAN Putative C-type lectin domain-containing p... 30 7.6
sp|Q8RFK2|MUTS_FUSNN DNA mismatch repair protein mutS OS=Fusobac... 30 9.9
sp|Q26614|FGFR_STRPU Fibroblast growth factor receptor OS=Strong... 30 9.9
sp|P35523|CLCN1_HUMAN Chloride channel protein, skeletal muscle ... 30 9.9

>sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg
PE=1 SV=2
Length = 3584

Score = 33.9 bits (76), Expect = 0.70
Identities = 34/115 (29%), Positives = 45/115 (39%)
Frame = -1

Query: 570 AVHSTPLFQIPYLTCKPLEAVSNKEIAVETHNQGHST*TAHSQQACQRIRVLYHIPHLHH 391
A HST T +P + S +A ++ Q H H QQ Q+ + PH H
Sbjct: 2071 ATHSTSSSASSTATSQPASSSSLSSLASQSQQQSHR--QLHKQQQQQQQQQQQQQPHYH- 2127

Query: 390 SLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYG 226
P Q +Y LI + HP KH E G +HP S P H +G
Sbjct: 2128 --PHQPHYG---------LINGHQQHP-QLNGKHYAENGSTAGYHPHSHP-HPHG 2169


>sp|Q68749|POLG_HCVBB Genome polyprotein OS=Hepatitis C virus genotype
2c (isolate BEBE1) PE=3 SV=3
Length = 3037

Score = 33.5 bits (75), Expect = 0.90
Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 3/109 (2%)
Frame = +3

Query: 24 GFLLPASPHTLTPPPSAWRPLLLLKSAASGSIFELAIVPVPCPSTEIRLIXXXXXXXXXX 203
G LP T PPP R ++L +S ++ ELAI CP
Sbjct: 2317 GCALPPPGTTPVPPPRRRRAVVLDQSNVGEALKELAIKSFGCPPP--------------- 2361

Query: 204 XXXXXXXHHTGDPVRTMGGGFKGDL---PQEHVSDDKNGDATQFKRLDG 341
+GDP + GGG G+ P + D + G + L+G
Sbjct: 2362 ---------SGDPGHSTGGGTTGETSKSPPDEPDDSEAGSVSSMPPLEG 2401


>sp|Q64347|CLCN1_MOUSE Chloride channel protein, skeletal muscle
OS=Mus musculus GN=Clcn1 PE=2 SV=2
Length = 994

Score = 31.2 bits (69), Expect = 4.5
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +3

Query: 9 AREKEGFLLPASPHTLTPPPSAWRPLLLLKSAASGSIFELAIVPVPCPSTEI 164
A E+E ++P P T PPPS P L + A G + EL +V P E+
Sbjct: 922 APERE-VMVPTMPETPVPPPSPEAPSCLAPARAEGELEELEMVGSLEPEEEL 972


>sp|Q8AZM0|POLS_BSNV Structural polyprotein OS=Blotched snakehead
virus PE=1 SV=1
Length = 1069

Score = 31.2 bits (69), Expect = 4.5
Identities = 21/54 (38%), Positives = 25/54 (46%)
Frame = -1

Query: 234 LYGEPSQAPRPPLQPEPWKPQ*AEFL*RGKVQEQWRARKWSRKLQTSGAEAAAT 73
+YG P+QAP PP E E RG Q Q R + SG+ AAAT
Sbjct: 983 IYGSPNQAPAPPEFVEEVAAVLMENNGRGPNQAQMRELRLKALTMKSGSGAAAT 1036


>sp|Q7XWS7|FH12_ORYSJ Formin-like protein 12 OS=Oryza sativa subsp.
japonica GN=FH12 PE=3 SV=3
Length = 1669

Score = 31.2 bits (69), Expect = 4.5
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1

Query: 261 HHP*SEPDHLYGEPSQAPRPPLQPEP 184
HHP P +L GE AP PP P P
Sbjct: 1043 HHPPERPHYLPGEVGGAPSPPSPPPP 1068


>sp|Q54KT2|Y8896_DICDI Putative uncharacterized protein DDB_G0287191
OS=Dictyostelium discoideum GN=DDB_G0287191 PE=4 SV=1
Length = 72

Score = 30.8 bits (68), Expect = 5.9
Identities = 23/83 (27%), Positives = 30/83 (36%)
Frame = -1

Query: 423 RVLYHIPHLHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SE 244
R+ YH + HHS P ++ + H HS H +HH S
Sbjct: 4 RLNYHHHNYHHSYPHHHHHHNY--------------HYHSYPHHH--------HHH--SH 39

Query: 243 PDHLYGEPSQAPRPPLQPEPWKP 175
H + PS P PP P P P
Sbjct: 40 HHHHHHLPSSPPSPPSPPSPPSP 62


>sp|Q6UXD1|HRCT1_HUMAN Histidine-rich carboxyl terminus protein 1
OS=Homo sapiens GN=HRCT1 PE=2 SV=1
Length = 115

Score = 30.8 bits (68), Expect = 5.9
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -1

Query: 378 QVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLY 229
+V +Q WP + + H H HVP VG +HHP P HL+
Sbjct: 52 RVRRAQPWPFRRRGHLGIFHHHRHPGHVSHVPNVGLHHHHHPRHTPHHLH 101


>sp|Q6ZU45|YA021_HUMAN Putative C-type lectin domain-containing
protein FLJ44005 OS=Homo sapiens PE=2 SV=1
Length = 233

Score = 30.4 bits (67), Expect = 7.6
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2

Query: 140 RNNG--ELENGAGSCRLQEQKRPPRAGRGSECMWRSGK 33
RN G ELE AGS R +EQ P GR W SG+
Sbjct: 7 RNRGLRELEEVAGSSRTREQLVPRLGGRAGYDWWASGE 44


>sp|Q8RFK2|MUTS_FUSNN DNA mismatch repair protein mutS
OS=Fusobacterium nucleatum subsp. nucleatum GN=mutS PE=3
SV=1
Length = 896

Score = 30.0 bits (66), Expect = 9.9
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -2

Query: 503 IRRLLWKLITRGIVHRLPILSKHAREYVSCITSHTSIIACQDRYTIASIGRFS 345
++R + ++IT G + + L K+ Y++CI +T+ YT + G FS
Sbjct: 119 VKREVTRVITPGTIIDVDFLDKNNNNYIACIKINTTENIVAIAYTDITTGEFS 171


>sp|Q26614|FGFR_STRPU Fibroblast growth factor receptor
OS=Strongylocentrotus purpuratus GN=FGFR PE=2 SV=1
Length = 972

Score = 30.0 bits (66), Expect = 9.9
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Frame = +3

Query: 267 KGDLPQEHVSDDKNGDA---TQFKRLDGAAEAANAGYSIPVLASYDGGVGCDTRHVFSGM 437
K D PQ+ + +A T K L G + GY + + G GC+ + + G
Sbjct: 54 KPDAPQDLTAIPVKAEAIVLTWKKPLKGQTD----GYIVVYCLKRNKGNGCERQKIEGGN 109

Query: 438 LAENGQSMYYAPG-YEFPQQSPYCSQPQGA 524
+ E + YA Y+F QS Y P+GA
Sbjct: 110 VTEVEVTNLYANHTYQFQVQSWYSDHPKGA 139


tr_hit_id B4N2C7
Definition tr|B4N2C7|B4N2C7_DROWI GK16142 OS=Drosophila willistoni
Align length 115
Score (bit) 38.5
E-value 0.32
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK962769|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_M03, 5'
(618 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B4N2C7|B4N2C7_DROWI GK16142 OS=Drosophila willistoni GN=GK161... 39 0.32
tr|B4LKR2|B4LKR2_DROVI GJ20116 OS=Drosophila virilis GN=GJ20116 ... 37 0.94
tr|B4J7V6|B4J7V6_DROGR GH20604 OS=Drosophila grimshawi GN=GH2060... 36 1.6
tr|B4KQW7|B4KQW7_DROMO GI20446 OS=Drosophila mojavensis GN=GI204... 36 2.1
tr|A1CP48|A1CP48_ASPCL Putative uncharacterized protein OS=Asper... 35 2.7
tr|B4KYB6|B4KYB6_DROMO GI12500 OS=Drosophila mojavensis GN=GI125... 35 2.7
tr|A9GRK7|A9GRK7_SORC5 Putative uncharacterized protein OS=Soran... 35 4.6
tr|A8JCM8|A8JCM8_CHLRE SM/Sec1-family protein OS=Chlamydomonas r... 35 4.6
tr|A6G5F2|A6G5F2_9DELT Putative uncharacterized protein OS=Plesi... 35 4.7
tr|B7FSP6|B7FSP6_PHATR Predicted protein OS=Phaeodactylum tricor... 35 4.7
tr|A3Z252|A3Z252_9SYNE Deoxyribodipyrimidine photolyase OS=Synec... 34 6.0
tr|B4N5E4|B4N5E4_DROWI GK20557 OS=Drosophila willistoni GN=GK205... 34 6.1
tr|Q2BC21|Q2BC21_9BACI Helicase, SWF/SNF family protein OS=Bacil... 34 7.8
tr|B3EQ74|B3EQ74_CHLPB PGAP1 family protein OS=Chlorobium phaeob... 34 7.9
tr|A6N3K6|A6N3K6_9PLAN Polysulfide reductase subunit C (Fragment... 34 7.9
tr|Q0KHV9|Q0KHV9_DROME Rugose, isoform C OS=Drosophila melanogas... 34 7.9
tr|B7Z0X3|B7Z0X3_DROME Rugose, isoform D OS=Drosophila melanogas... 34 7.9
tr|B7Z0W8|B7Z0W8_DROME Rugose, isoform F OS=Drosophila melanogas... 34 7.9

>tr|B4N2C7|B4N2C7_DROWI GK16142 OS=Drosophila willistoni GN=GK16142
PE=4 SV=1
Length = 809

Score = 38.5 bits (88), Expect = 0.32
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 7/115 (6%)
Frame = -1

Query: 507 SNKEIAVETHNQGHST*TAHSQQACQRIRVLYHIPHLHHS-----LPRQVYYSQHWPLQL 343
+N + V+ H Q H+T H A +H+ H HH+ P ++ H +
Sbjct: 170 TNSAVNVKPHTQFHNTLAHHMTVAHHAAAAAHHV-HAHHAPHPHPHPHHSHHHHHHHAAM 228

Query: 342 LHLIF*T--E*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYGEPSQAPRPPLQPEP 184
H + HPH+ HVP VG + + P P P P L P+P
Sbjct: 229 AHHLLANGFHPHPHALALAHVPVVGGQQSTAAVAPP-----APPTLPPPTLMPQP 278


>tr|B4LKR2|B4LKR2_DROVI GJ20116 OS=Drosophila virilis GN=GJ20116
PE=4 SV=1
Length = 793

Score = 37.0 bits (84), Expect = 0.94
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Frame = -1

Query: 399 LHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYGEP 220
L H P Y ++ P H + E P H P P+ HP + P HL+G P
Sbjct: 210 LDHRRPPIDPYDRYGPPIHPHAVHPREYRPMHHEYPHPPRGPPMHRGHPHAHPHHLHGHP 269

Query: 219 ---SQAPRPPLQPEPWKP 175
AP P+ P P P
Sbjct: 270 PPHQYAPMRPMAPRPHVP 287


>tr|B4J7V6|B4J7V6_DROGR GH20604 OS=Drosophila grimshawi GN=GH20604
PE=4 SV=1
Length = 793

Score = 36.2 bits (82), Expect = 1.6
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Frame = -1

Query: 399 LHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYGEP 220
L H P Y ++ P H E P H P P+ HP + P HL+G P
Sbjct: 210 LDHRRPPVDPYDRYGPPLHPHAAHPREYRPMHHEYPHPPRGPPMHRGHPHTHPHHLHGHP 269

Query: 219 ---SQAPRPPLQPEPWKP 175
AP P+ P P P
Sbjct: 270 PPHQYAPMRPMAPRPHVP 287


>tr|B4KQW7|B4KQW7_DROMO GI20446 OS=Drosophila mojavensis GN=GI20446
PE=4 SV=1
Length = 791

Score = 35.8 bits (81), Expect = 2.1
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Frame = -1

Query: 399 LHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYGEP 220
L H P Y ++ P H + E P H P P+ HP + P H++G P
Sbjct: 210 LDHRRPPIDPYDRYGPPIHPHSVHPREYRPMHHEYPHPPRGPPIHRGHPHAHPHHMHGHP 269

Query: 219 ---SQAPRPPLQPEPWKP 175
AP P+ P P P
Sbjct: 270 PPHQYAPMRPMAPRPHVP 287


>tr|A1CP48|A1CP48_ASPCL Putative uncharacterized protein
OS=Aspergillus clavatus GN=ACLA_021280 PE=4 SV=1
Length = 122

Score = 35.4 bits (80), Expect = 2.7
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3

Query: 450 GQSMYYAPGYEFPQQSPYCSQPQ-GAYMSNMGSGTT 554
GQ MYY P +PQQ PY Q Q G Y G G++
Sbjct: 65 GQPMYYPPPQGYPQQQPYPPQQQPGYYADERGGGSS 100


>tr|B4KYB6|B4KYB6_DROMO GI12500 OS=Drosophila mojavensis GN=GI12500
PE=4 SV=1
Length = 788

Score = 35.4 bits (80), Expect = 2.7
Identities = 21/72 (29%), Positives = 29/72 (40%)
Frame = -1

Query: 549 FQIPYLTCKPLEAVSNKEIAVETHNQGHST*TAHSQQACQRIRVLYHIPHLHHSLPRQVY 370
F P L+ P+E + K+ + H H QQ Q + YH H Q +
Sbjct: 296 FSTPMLS--PMEIKTEKQQRQQQQQHQHQQQQQHQQQQQQHQQQQYHQQQQHQQQQHQQH 353

Query: 369 YSQHWPLQLLHL 334
Y QH+ Q HL
Sbjct: 354 YQQHYQQQQQHL 365


>tr|A9GRK7|A9GRK7_SORC5 Putative uncharacterized protein
OS=Sorangium cellulosum (strain So ce56) GN=sce3477 PE=4
SV=1
Length = 486

Score = 34.7 bits (78), Expect = 4.6
Identities = 26/88 (29%), Positives = 31/88 (35%)
Frame = +3

Query: 285 EHVSDDKNGDATQFKRLDGAAEAANAGYSIPVLASYDGGVGCDTRHVFSGMLAENGQSMY 464
EHV D G GA A G +P GGVG F G +G Y
Sbjct: 66 EHVVDVPAGGGADVPNSGGADVPAGGGADVP----NGGGVGDRCAGPFPGEEPRDGSGYY 121

Query: 465 YAPGYEFPQQSPYCSQPQGAYMSNMGSG 548
PG +P +S G YM + G
Sbjct: 122 LKPGLLYPAES------SGVYMGQLSLG 143


>tr|A8JCM8|A8JCM8_CHLRE SM/Sec1-family protein OS=Chlamydomonas
reinhardtii GN=VPS45 PE=4 SV=1
Length = 620

Score = 34.7 bits (78), Expect = 4.6
Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
Frame = +3

Query: 231 TGDPVRTMGGGFKGDLPQEHVSDDKNGDATQFKRL-----DGAAEAANAGYSIPVLASYD 395
TGD V T+ K P+E + G + + D A AANAG +P AS
Sbjct: 505 TGDEVATLTANAKRAPPREVIVFVLGGTTYEEAKAVAEMNDRANAAANAGPGVPAGASPS 564

Query: 396 GGVGCDTRHVFSGMLAENGQSMYYA--PGYEFPQQSPYCSQPQGAYMSNMGSG 548
GG R V G N Q A G PQ + QGA +++ GSG
Sbjct: 565 GGQLPTPRVVLGGTGILNSQMFLSALTSGLNIPQSA------QGAGVTSSGSG 611


>tr|A6G5F2|A6G5F2_9DELT Putative uncharacterized protein
OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_03463 PE=4 SV=1
Length = 480

Score = 34.7 bits (78), Expect = 4.7
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1

Query: 228 GEPSQAPRPPLQPEPWKP 175
G+P+ AP PP +PEPW+P
Sbjct: 154 GDPADAPEPPPEPEPWEP 171


>tr|B7FSP6|B7FSP6_PHATR Predicted protein OS=Phaeodactylum
tricornutum CCAP 1055/1 GN=PHATRDRAFT_43574 PE=4 SV=1
Length = 499

Score = 34.7 bits (78), Expect = 4.7
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +1

Query: 379 SWQAMMEVWDVIQDTYSLACLLRM-GSLCTMPLVMSFHSNLLIAHSLKGLTCQIWDLEQR 555
SW ++VWD+ + CLL + GS L S+HS+ ++A T ++WD+
Sbjct: 347 SWDHSLKVWDMERQD----CLLTLNGSRVVSCLDTSYHSSGIVATGHPDCTVRLWDVRID 402

Query: 556 GTVDRSMGL 582
T + S+ L
Sbjct: 403 ATNESSLAL 411