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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962662
Clone id TST39A01NGRL0014_H14
Library
Length 623
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_H14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
AAAAGGGAAAGCGGAAATGTAGCAGCGGGAACTCCAGAGTTTGTTGGCCGAGTCGAGTTT
TCAATGCTGCAGGGGCCTGTAGGTTGGATTTTCTCATCACGTGTGAAGTCTACGGGCGCA
GAAGGGTCTGATGGGTAGAGCTGCTAAAGCTGGGTCGGCAGAGCAGATGGCGAGTTCTTT
ATGTTAATCCTGCAATCTCTGCATTCACCAGGTTACTTGTTGCGAAGGGTGTTGCCCGGC
AGAAATCATCATGGTTTTGAGGGTCAAATTTTGACAGACTGAGGGTTTACATACTCGAGT
AGGTTCACTTTTTCTGCCAATTAAGAGTTTTTAGCTACTAAGCGGTGAAGAATCCCTCTA
CATTCCTGCATTAGCATGTTAGAAGAACAGCTTAGCCAAGAAGGCAATGCACATTAGAAC
CCCTTATCTCTCACACCTTGAAGCTACCTGATCACGATGGCTGGCCCTTGGCATCATACC
TTTTTAACAGAATTGGAAGATGTCCAGGCTTTGAATGAGTGCAACGAATTCAATAACCAA
GGACTAGCTTGTGGCAGTCATATGTTAGCATTATTCAAATTTAAGCGAATTTTACCTCGG
TAATGAAGAGAGTCTCGCAAACA
■■Homology search results ■■ -
sp_hit_id P17852
Definition sp|P17852|ITA3_CRIGR Integrin alpha-3 OS=Cricetulus griseus
Align length 52
Score (bit) 31.2
E-value 4.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962662|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_H14, 5'
         (623 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P17852|ITA3_CRIGR Integrin alpha-3 OS=Cricetulus griseus GN=I...    31   4.5  
sp|B1V8K7|GLAA_STRGU Alpha-1,3-galactosidase A OS=Streptomyces g...    30   7.7  
sp|P20796|ADP1_MYCGE Adhesin P1 OS=Mycoplasma genitalium GN=mgpA...    30   7.7  

>sp|P17852|ITA3_CRIGR Integrin alpha-3 OS=Cricetulus griseus
           GN=ITGA3 PE=1 SV=2
          Length = 1066

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -2

Query: 211 LVNAEIAGLT*RTRHLLCRPSFSSSTHQTLLRP*TSHVMRKSNLQAPAALKT 56
           L+  E+ G+T  TR L  +   S+S+HQ  L+P T  +     LQA  +L T
Sbjct: 717 LIAFEVIGVTLHTRDLKAQLQLSTSSHQDNLQPMTLILQVDYTLQASLSLMT 768


>sp|B1V8K7|GLAA_STRGU Alpha-1,3-galactosidase A OS=Streptomyces
           griseoplanus GN=glaA PE=1 SV=1
          Length = 727

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 21/55 (38%), Positives = 23/55 (41%)
 Frame = -1

Query: 176 NSPSALPTQL*QLYPSDPSAPVDFTRDEKIQPTGPCSIENSTRPTNSGVPAATFP 12
           N  S  P    Q YP D    VD  R     P     + + T PT SGVPA T P
Sbjct: 378 NETSGFP----QFYPGDTIELVD-KRTMLAAPGATAKVVSVTGPTGSGVPAGTDP 427


>sp|P20796|ADP1_MYCGE Adhesin P1 OS=Mycoplasma genitalium GN=mgpA PE=3
            SV=1
          Length = 1444

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
 Frame = -1

Query: 191  RINIKNSPSALPTQL*QLYPSDPSAPVDFTRDE-KIQPTGPCS-------IENSTRPTNS 36
            R+   N  + +P +  Q+ PS+ S P D   D+ K+ P+G  S       + NS  PT+ 
Sbjct: 835  RVQSANQKNGIPFE--QVKPSNNSTPFDPNSDDNKVTPSGGSSKPTTYPALPNSISPTSD 892

Query: 35   GVPAATF 15
             + A TF
Sbjct: 893  WINALTF 899
tr_hit_id A6T0P7
Definition tr|A6T0P7|A6T0P7_JANMA Uncharacterized conserved protein OS=Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis)
Align length 105
Score (bit) 33.9
E-value 8.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962662|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_H14, 5'
         (623 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6T0P7|A6T0P7_JANMA Uncharacterized conserved protein OS=Jant...    34   8.0  
tr|Q6K6E5|Q6K6E5_ORYSJ Aminotransferase-like protein OS=Oryza sa...    34   8.0  

>tr|A6T0P7|A6T0P7_JANMA Uncharacterized conserved protein
           OS=Janthinobacterium sp. (strain Marseille)
           (Minibacterium massiliensis) GN=mma_2404 PE=4 SV=1
          Length = 322

 Score = 33.9 bits (76), Expect = 8.0
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
 Frame = +1

Query: 1   KRESG---NVAAGTPEF----VGRVEFSMLQGPVGWIFSSRVKSTGAEGSDG*-----SC 144
           KR +G   +V AG+ E     +GR E + +Q  + +  + +  ++   G+DG        
Sbjct: 124 KRGTGWQFDVQAGSEEMRTRRIGRNELNTMQALLAYYDAQKEYASVDRGNDGVLQYAQKF 183

Query: 145 *SWVGRADGEFFMLILQSLHSP-GYLLRRVLPGRNHHGFEGQILT 276
            S  G+ DG ++ +  +   SP G L   + PG  +HG+  +ILT
Sbjct: 184 KSTAGKHDGLYWAVSGKEAESPLGSLFAEIKPGEGYHGYYYRILT 228


>tr|Q6K6E5|Q6K6E5_ORYSJ Aminotransferase-like protein OS=Oryza
           sativa subsp. japonica GN=P0654A08.2 PE=4 SV=1
          Length = 753

 Score = 33.9 bits (76), Expect = 8.0
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = -1

Query: 185 NIKNSPSALPTQL*QLYPSDPSAPVDFTR----DEKIQPTGPCSIENSTRPTNSGVPA 24
           +I+ +PSA P Q     P  PSAPV FTR    D+     G   +E   +P    +PA
Sbjct: 527 DIERTPSASPKQT----PPTPSAPVHFTRQSSSDQTPSAVGSHHVEEEEQPAAPAIPA 580