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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962643
Clone id TST39A01NGRL0014_G18
Library
Length 613
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_G18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CAGCTTTCTGGGTAACAAAGATTCTGCTCACAAAGATTTTCGTGTTTGTGCTAATGCATA
GTTACTCTGCTTCTTGTGGAAAGGTTGCCTATTTGCCCATTTGTACTCTGCGTAGTGATA
TACTCGAACCGCGTGACTCCATAGCTTAAACAGCTTTAAATGATATGGCTTTAAGAGCAA
TGGAGGGCAAAAAGGAGGAGCCAGAGATAATCAATGTGTGGGAGCTAATGTCTGGGCTCG
ACGATGCTGAATCATCCCCCAGGGAGATGCCTTTCCCAGCTATTCCAATGTCGAAACAGA
TGGCCATATCACCCGATCTGGCGGCAAAGCTCTCTTTGGATTCGTTCACACTTGAACCAT
CAAATGAAAGAGCAAGACATCCCCAAAAACCTTTCTTTCCGAAGGTAGAGCGGAGGTATG
CGCGATCTTCAGTTCTTGTATTAGAAGACCCGGTCACACCTTTACCAGCACCTCCCCCCA
TAAAGCTGAACCCTGTTGATACACCCTCTTCAAAGGGTTCATCCCTTTTTGGTAGTGTTT
CCGGATCCAATACATCCTCATTCGAAGCTCTTGGCAGACAATTTGCAAAGGTCTCTCTCT
TTTAAGCTTGTTT
■■Homology search results ■■ -
sp_hit_id Q9FLE8
Definition sp|Q9FLE8|Y5986_ARATH Uncharacterized protein At5g39865 OS=Arabidopsis thaliana
Align length 25
Score (bit) 32.0
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962643|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_G18, 5'
         (613 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FLE8|Y5986_ARATH Uncharacterized protein At5g39865 OS=Arabi...    32   2.6  
sp|Q9LH89|Y3885_ARATH Uncharacterized protein At3g28850 OS=Arabi...    31   4.4  
sp|P40455|YIP2_YEAST Uncharacterized protein YIL152W OS=Saccharo...    30   7.5  
sp|Q811P8|RICS_MOUSE Rho/Cdc42/Rac GTPase-activating protein RIC...    30   9.7  
sp|P37495|YYBI_BACSU Uncharacterized protein yybI OS=Bacillus su...    30   9.8  

>sp|Q9FLE8|Y5986_ARATH Uncharacterized protein At5g39865
           OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1
          Length = 390

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = +3

Query: 198 EPEIINVWELMSGLDDAESSPREMP 272
           EPE IN WELM GL+D   SP   P
Sbjct: 139 EPETINTWELMEGLEDV--SPLRSP 161


>sp|Q9LH89|Y3885_ARATH Uncharacterized protein At3g28850
           OS=Arabidopsis thaliana GN=At3g28850 PE=1 SV=1
          Length = 428

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 198 EPEIINVWELMSGLDDAESSPR 263
           EPE IN WE+M GL+D  S  R
Sbjct: 139 EPETINTWEMMDGLEDVLSPLR 160


>sp|P40455|YIP2_YEAST Uncharacterized protein YIL152W
           OS=Saccharomyces cerevisiae GN=YIL152W PE=4 SV=1
          Length = 235

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 253 HPPGRCLSQLFQCRNRWPYHPIWRQSS 333
           HPPG+ LS +     R P+HP+ +QS+
Sbjct: 20  HPPGQSLSSISWSPTRRPHHPLKQQST 46


>sp|Q811P8|RICS_MOUSE Rho/Cdc42/Rac GTPase-activating protein RICS
            OS=Mus musculus GN=Rics PE=1 SV=2
          Length = 2089

 Score = 30.0 bits (66), Expect = 9.7
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -3

Query: 425  SRIPPLYLRKERFLGMSCSF 366
            SR PPL+LR E F G SC F
Sbjct: 1394 SRAPPLHLRAESFPGHSCGF 1413


>sp|P37495|YYBI_BACSU Uncharacterized protein yybI OS=Bacillus
           subtilis GN=yybI PE=4 SV=1
          Length = 262

 Score = 30.0 bits (66), Expect = 9.8
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 271 LSQLFQCRNRWPYHPIWRQSSLWIRSHLNHQMKEQDIPKNLSF 399
           + ++F   N+ P  P+WR  +L IR    HQ +   +  N+ +
Sbjct: 49  IDEVFLTGNQMPGSPLWRNITLVIRDGRTHQEQRIQLQNNMGY 91
tr_hit_id Q9ZSB9
Definition tr|Q9ZSB9|Q9ZSB9_ARATH Putative uncharacterized protein AT4g10630 OS=Arabidopsis thaliana
Align length 96
Score (bit) 40.8
E-value 0.062
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962643|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_G18, 5'
         (613 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9ZSB9|Q9ZSB9_ARATH Putative uncharacterized protein AT4g1063...    41   0.062
tr|B4FZH4|B4FZH4_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.31 
tr|A9SZD0|A9SZD0_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.40 
tr|Q6YUW0|Q6YUW0_ORYSJ Glutaredoxin-like (Putative uncharacteriz...    36   1.5  
tr|Q0DXK3|Q0DXK3_ORYSJ Os02g0748800 protein OS=Oryza sativa subs...    36   1.5  
tr|A7QJ47|A7QJ47_VITVI Chromosome chr2 scaffold_105, whole genom...    36   1.5  
tr|A2X9M2|A2X9M2_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.5  
tr|B7ZXZ1|B7ZXZ1_MAIZE Putative uncharacterized protein OS=Zea m...    36   2.0  
tr|Q2BP08|Q2BP08_9GAMM Glycosyltransferase OS=Neptuniibacter cae...    35   2.7  
tr|Q9FSR1|Q9FSR1_ORYSA H0423H10.2 protein (B0414F07.6 protein) O...    35   4.5  
tr|Q7X6B6|Q7X6B6_ORYSJ Os04g0641300 protein OS=Oryza sativa subs...    35   4.5  
tr|A4SBI2|A4SBI2_OSTLU Predicted protein OS=Ostreococcus lucimar...    35   4.5  
tr|A3AXX3|A3AXX3_ORYSJ Putative uncharacterized protein OS=Oryza...    35   4.5  
tr|A2XY45|A2XY45_ORYSI Putative uncharacterized protein OS=Oryza...    35   4.5  
tr|A8N8X0|A8N8X0_COPC7 Putative uncharacterized protein OS=Copri...    34   5.8  
tr|Q6GN08|Q6GN08_XENLA LOC398742 protein OS=Xenopus laevis GN=nc...    34   7.6  
tr|A9P0E6|A9P0E6_PICSI Putative uncharacterized protein OS=Picea...    34   7.6  
tr|Q9M1J3|Q9M1J3_ARATH Putative uncharacterized protein F24I3.15...    33   10.0 
tr|Q1SN07|Q1SN07_MEDTR Thioredoxin fold OS=Medicago truncatula G...    33   10.0 
tr|A7PMS3|A7PMS3_VITVI Chromosome chr14 scaffold_21, whole genom...    33   10.0 

>tr|Q9ZSB9|Q9ZSB9_ARATH Putative uncharacterized protein AT4g10630
           OS=Arabidopsis thaliana GN=AT4g10630 PE=4 SV=1
          Length = 334

 Score = 40.8 bits (94), Expect = 0.062
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 18/96 (18%)
 Frame = +3

Query: 192 KEEPEIINVWELMSGLDDAESSPREMPFPAIPM--------SKQMAISPDLAAKLSLDSF 347
           K EPEIIN WELMSGLD    S R  P P  P+        +K+ +       + +L+  
Sbjct: 75  KSEPEIINSWELMSGLDG--ESFRFTPLPKTPVKYKVFGGENKENSDPSRRNPRKNLNDE 132

Query: 348 TLEP-------SNERARHPQKPFFP---KVERRYAR 425
            L+P       S+  +R P+K F P   K++ ++ R
Sbjct: 133 VLKPLDLNREDSDSNSRSPRKSFKPLDLKLDEKFER 168


>tr|B4FZH4|B4FZH4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 424

 Score = 38.5 bits (88), Expect = 0.31
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 13/61 (21%)
 Frame = +3

Query: 198 EPEIINVWELMSGLDDAESSPR-------------EMPFPAIPMSKQMAISPDLAAKLSL 338
           EPE+IN WELM+GL+D   +PR             E+   A P+ + M    D+   L  
Sbjct: 105 EPEVINAWELMAGLEDDAPTPRATYRCSLLNELPQELGLEAPPLPEWMQADMDMPVALDF 164

Query: 339 D 341
           D
Sbjct: 165 D 165


>tr|A9SZD0|A9SZD0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_167257 PE=4 SV=1
          Length = 655

 Score = 38.1 bits (87), Expect = 0.40
 Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +3

Query: 198 EPEIINVWELMSGLDDAE--SSPREM-PFPAIPMSKQMAISPDLAAKLSLDSFT 350
           E E IN WELM GLDD    +SP    P PA+P  K ++    L    S+ SFT
Sbjct: 153 ETETINTWELMEGLDDRTPLASPLPTNPAPAVPPPKDLSCVGVLPKLSSMPSFT 206


>tr|Q6YUW0|Q6YUW0_ORYSJ Glutaredoxin-like (Putative uncharacterized
           protein) OS=Oryza sativa subsp. japonica
           GN=OSJNBa0078N11.37 PE=4 SV=1
          Length = 369

 Score = 36.2 bits (82), Expect = 1.5
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +3

Query: 198 EPEIINVWELMSGLDDAE 251
           EPE+INVWELM GLDD +
Sbjct: 95  EPEVINVWELMEGLDDKD 112


>tr|Q0DXK3|Q0DXK3_ORYSJ Os02g0748800 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0748800 PE=4 SV=1
          Length = 458

 Score = 36.2 bits (82), Expect = 1.5
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +3

Query: 198 EPEIINVWELMSGLDDAE 251
           EPE+INVWELM GLDD +
Sbjct: 184 EPEVINVWELMEGLDDKD 201


>tr|A7QJ47|A7QJ47_VITVI Chromosome chr2 scaffold_105, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00000505001
           PE=4 SV=1
          Length = 320

 Score = 36.2 bits (82), Expect = 1.5
 Identities = 21/42 (50%), Positives = 26/42 (61%)
 Frame = +3

Query: 186 GKKEEPEIINVWELMSGLDDAESSPREMPFPAIPMSKQMAIS 311
           G + EPE+IN WELM+GLD    S R  P P  P SK  A++
Sbjct: 71  GIRSEPEVINSWELMAGLD--ADSFRFPPLPLAP-SKPKALA 109


>tr|A2X9M2|A2X9M2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08940 PE=4 SV=1
          Length = 369

 Score = 36.2 bits (82), Expect = 1.5
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +3

Query: 198 EPEIINVWELMSGLDDAE 251
           EPE+INVWELM GLDD +
Sbjct: 95  EPEVINVWELMEGLDDKD 112


>tr|B7ZXZ1|B7ZXZ1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 377

 Score = 35.8 bits (81), Expect = 2.0
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +3

Query: 198 EPEIINVWELMSGLDD 245
           EPE+INVWELM GLDD
Sbjct: 82  EPEVINVWELMDGLDD 97


>tr|Q2BP08|Q2BP08_9GAMM Glycosyltransferase OS=Neptuniibacter
           caesariensis GN=MED92_09924 PE=4 SV=1
          Length = 378

 Score = 35.4 bits (80), Expect = 2.7
 Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = +1

Query: 301 WPYHPIWRQSSLWIRSHLNHQMKEQDIP--KNLSFRR*SGGMRDLQFLY*KTRSHLYQHL 474
           W +HP   Q  +       H +KEQ+I    +L  RR    MRDL+ +Y KT+S L  + 
Sbjct: 12  WGHHPSSTQHLI------RHLIKEQEIVWVNSLGLRRPRLNMRDLKRVYTKTKS-LLINK 64

Query: 475 PP*S*TLLIHPLQRVHPFLVVFP 543
           P    TL  HP Q V+P  + FP
Sbjct: 65  PLSEATLAAHP-QIVNPVSLPFP 86


>tr|Q9FSR1|Q9FSR1_ORYSA H0423H10.2 protein (B0414F07.6 protein)
           OS=Oryza sativa GN=H0423H10.2 PE=4 SV=2
          Length = 443

 Score = 34.7 bits (78), Expect = 4.5
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +3

Query: 198 EPEIINVWELMSGLDDAESSP 260
           EPE+IN WELM+GL+D   +P
Sbjct: 105 EPEVINAWELMAGLEDDPPTP 125