DK962456 |
Clone id |
TST39A01NGRL0013_O20 |
Library |
TST39 |
Length |
331 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0013_O20. 5' end sequence. |
Accession |
DK962456 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GTTGATTACGGGCTATCTAACATTGGAGGAAGACTATCATAAGAAGTCGGGCACTTGTGA AGTAGCTGGCGGAATAGTCACACGCACTCCGTACGTGATATATTGCCGTCGTTGCTGATT CAGCGTAGTGGATGCTCTATGCACTGTGTATGAGCCGTGGACCTGTGCGAGGCTTTTGTG CTACGTCACATTGGAAACATGGTACCACCTTAGACCGGGAACTCTTGCTCATCTGCGGCT TCTGCCATTGAGTATGCGGTGCTGCACTTGAAGGTGAACGCATCTTGTTGTCATTGACCA CGGCCGATGGGGTGACCTCCCAGCCTTGATG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P46513 |
Definition |
sp|P46513|CAH2_FLALI Carbonic anhydrase 2 (Fragment) OS=Flaveria linearis |
Align length |
47 |
Score (bit) |
47.4 |
E-value |
2.0e-05 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK962456|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0013_O20, 5' (331 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P46513|CAH2_FLALI Carbonic anhydrase 2 (Fragment) OS=Flaveria... 47 2e-05 sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=... 45 9e-05 sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2... 45 9e-05 sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=... 45 9e-05 sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis P... 45 9e-05 sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum sa... 43 4e-04 sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicoti... 43 6e-04 sp|P42737|CAH2_ARATH Carbonic anhydrase 2 OS=Arabidopsis thalian... 43 6e-04 sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic OS=Arabid... 42 7e-04 sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinac... 41 0.002 sp|P40880|CAHC_HORVU Carbonic anhydrase, chloroplastic OS=Hordeu... 39 0.011 sp|O83388|TILS_TREPA tRNA(Ile)-lysidine synthase OS=Treponema pa... 33 0.34 sp|Q9ZN54|CYNT_HELPJ Carbonic anhydrase OS=Helicobacter pylori J... 33 0.45 sp|Q54735|CYNT_SYNY3 Carbonic anhydrase OS=Synechocystis sp. (st... 32 0.99 sp|P27134|CYNT_SYNE7 Carbonic anhydrase OS=Synechococcus elongat... 31 2.2 sp|O17582|SPR4_CAEEL Suppressor of presenilin protein 4 OS=Caeno... 31 2.2 sp|Q0DWT8|RH1_ORYSJ DEAD-box ATP-dependent RNA helicase 1 OS=Ory... 30 4.9 sp|A1L390|PKHG3_HUMAN Pleckstrin homology domain-containing fami... 30 4.9 sp|Q13261|I15RA_HUMAN Interleukin-15 receptor subunit alpha OS=H... 30 4.9 sp|Q5BCC5|CAN_EMENI Carbonic anhydrase OS=Emericella nidulans GN... 30 4.9
>sp|P46513|CAH2_FLALI Carbonic anhydrase 2 (Fragment) OS=Flaveria linearis PE=2 SV=1 Length = 190
Score = 47.4 bits (111), Expect = 2e-05 Identities = 27/47 (57%), Positives = 30/47 (63%), Gaps = 6/47 (12%) Frame = +1
Query: 169 EAFVLRHIGNMVPP*TGNSCSSAASAIEYAVLHLKV------NASCC 291 EAFV+R+I NMVPP S A +AIEYAVLHLKV SCC Sbjct: 38 EAFVVRNIANMVPPYDTIKHSGAGAAIEYAVLHLKVENIVVIGHSCC 84
>sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1 Length = 329
Score = 45.4 bits (106), Expect = 9e-05 Identities = 21/36 (58%), Positives = 26/36 (72%) Frame = +1
Query: 169 EAFVLRHIGNMVPP*TGNSCSSAASAIEYAVLHLKV 276 EAFV+R++ NMVPP S +A+EYAVLHLKV Sbjct: 177 EAFVVRNVANMVPPFDKTKYSGVGAAVEYAVLHLKV 212
>sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2 SV=1 Length = 330
Score = 45.4 bits (106), Expect = 9e-05 Identities = 21/36 (58%), Positives = 26/36 (72%) Frame = +1
Query: 169 EAFVLRHIGNMVPP*TGNSCSSAASAIEYAVLHLKV 276 EAFV+R++ NMVPP S +A+EYAVLHLKV Sbjct: 178 EAFVVRNVANMVPPFDKTKYSGVGAAVEYAVLHLKV 213
>sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=2 Length = 330
Score = 45.4 bits (106), Expect = 9e-05 Identities = 21/36 (58%), Positives = 26/36 (72%) Frame = +1
Query: 169 EAFVLRHIGNMVPP*TGNSCSSAASAIEYAVLHLKV 276 EAFV+R++ NMVPP S +A+EYAVLHLKV Sbjct: 178 EAFVVRNVANMVPPFDKTKYSGVGAAVEYAVLHLKV 213
>sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis PE=2 SV=1 Length = 330
Score = 45.4 bits (106), Expect = 9e-05 Identities = 21/36 (58%), Positives = 26/36 (72%) Frame = +1
Query: 169 EAFVLRHIGNMVPP*TGNSCSSAASAIEYAVLHLKV 276 EAFV+R++ NMVPP S +A+EYAVLHLKV Sbjct: 178 EAFVVRNVANMVPPFDKTKYSGVGAAVEYAVLHLKV 213
>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum sativum PE=1 SV=1 Length = 328
Score = 43.1 bits (100), Expect = 4e-04 Identities = 20/37 (54%), Positives = 27/37 (72%) Frame = +1
Query: 169 EAFVLRHIGNMVPP*TGNSCSSAASAIEYAVLHLKVN 279 EAFV+R++ N+VPP + +AIEYAVLHLKV+ Sbjct: 176 EAFVVRNVANLVPPYDQAKYAGTGAAIEYAVLHLKVS 212
>sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1 Length = 321
Score = 42.7 bits (99), Expect = 6e-04 Identities = 22/36 (61%), Positives = 25/36 (69%) Frame = +1
Query: 169 EAFVLRHIGNMVPP*TGNSCSSAASAIEYAVLHLKV 276 EAFV+R+I NMVP S +AIEYAVLHLKV Sbjct: 169 EAFVVRNIANMVPAYDKTRYSGVGAAIEYAVLHLKV 204
>sp|P42737|CAH2_ARATH Carbonic anhydrase 2 OS=Arabidopsis thaliana GN=CA2 PE=1 SV=2 Length = 259
Score = 42.7 bits (99), Expect = 6e-04 Identities = 21/36 (58%), Positives = 26/36 (72%) Frame = +1
Query: 169 EAFVLRHIGNMVPP*TGNSCSSAASAIEYAVLHLKV 276 +AFV+R+I NMVPP + +AIEYAVLHLKV Sbjct: 107 DAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKV 142
>sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic OS=Arabidopsis thaliana GN=CA1 PE=1 SV=2 Length = 347
Score = 42.4 bits (98), Expect = 7e-04 Identities = 21/36 (58%), Positives = 25/36 (69%) Frame = +1
Query: 169 EAFVLRHIGNMVPP*TGNSCSSAASAIEYAVLHLKV 276 +AFV+R+I NMVPP +AIEYAVLHLKV Sbjct: 184 DAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKV 219
>sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinacia oleracea PE=1 SV=2 Length = 319
Score = 40.8 bits (94), Expect = 0.002 Identities = 20/36 (55%), Positives = 26/36 (72%) Frame = +1
Query: 169 EAFVLRHIGNMVPP*TGNSCSSAASAIEYAVLHLKV 276 EAF++R+I NMVP + + +AIEYAVLHLKV Sbjct: 167 EAFMVRNIANMVPVFDKDKYAGVGAAIEYAVLHLKV 202
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B7FL34 |
Definition |
tr|B7FL34|B7FL34_MEDTR Putative uncharacterized protein OS=Medicago truncatula |
Align length |
47 |
Score (bit) |
48.9 |
E-value |
0.0001 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK962456|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0013_O20, 5' (331 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B7FL34|B7FL34_MEDTR Putative uncharacterized protein OS=Medic... 49 1e-04 tr|Q84Y10|Q84Y10_FLABI Carbonic anhydrase OS=Flaveria bidentis P... 47 4e-04 tr|Q2Q064|Q2Q064_FLAPR Carbonic anhydrase OS=Flaveria pringlei P... 47 4e-04 tr|A9PEY8|A9PEY8_POPTR Carbonic anhydrase OS=Populus trichocarpa... 47 6e-04 tr|A9PED7|A9PED7_POPTR Carbonic anhydrase OS=Populus trichocarpa... 47 6e-04 tr|A1BQP3|A1BQP3_CUCSA Carbonic anhydrase (Fragment) OS=Cucumis ... 46 8e-04 tr|Q5NE21|Q5NE21_SOLLC Carbonic anhydrase OS=Solanum lycopersicu... 46 0.001 tr|B8LNL1|B8LNL1_PICSI Putative uncharacterized protein OS=Picea... 46 0.001 tr|A9PJH1|A9PJH1_POPJC Carbonic anhydrase OS=Populus jackii PE=2... 46 0.001 tr|A9PIY3|A9PIY3_POPJC Carbonic anhydrase OS=Populus jackii PE=2... 46 0.001 tr|A9NNY0|A9NNY0_PICSI Carbonic anhydrase OS=Picea sitchensis PE... 46 0.001 tr|Q94CE4|Q94CE4_ARATH Carbonic anhydrase OS=Arabidopsis thalian... 45 0.002 tr|O64595|O64595_ARATH Carbonic anhydrase OS=Arabidopsis thalian... 45 0.002 tr|A7QNW6|A7QNW6_VITVI Chromosome chr1 scaffold_135, whole genom... 45 0.002 tr|Q41089|Q41089_9ROSI Carbonic anhydrase OS=Populus tremula x P... 45 0.002 tr|Q41088|Q41088_9ROSI Carbonic anhydrase OS=Populus tremula x P... 45 0.002 tr|Q9XF69|Q9XF69_GOSHI Carbonic anhydrase (Fragment) OS=Gossypiu... 44 0.003 tr|Q9SYW6|Q9SYW6_GOSHI Carbonic anhydrase (Fragment) OS=Gossypiu... 44 0.003 tr|Q8LSC8|Q8LSC8_GOSHI Carbonic anhydrase OS=Gossypium hirsutum ... 44 0.003 tr|A9P0C5|A9P0C5_PICSI Carbonic anhydrase OS=Picea sitchensis PE... 44 0.003 tr|A9NSY6|A9NSY6_PICSI Carbonic anhydrase OS=Picea sitchensis PE... 44 0.003 tr|Q1PG92|Q1PG92_STRAF Carbonic anhydrase (Fragment) OS=Striga a... 44 0.005 tr|B2ZCP6|B2ZCP6_LEMMI Carbonic anhydrase (Fragment) OS=Lemna mi... 44 0.005 tr|B1VK36|B1VK36_SOLLC Carbonic anhydrase OS=Solanum lycopersicu... 44 0.005 tr|A9NX90|A9NX90_PICSI Putative uncharacterized protein OS=Picea... 43 0.007 tr|Q8W183|Q8W183_TOBAC Carbonic anhydrase OS=Nicotiana tabacum P... 43 0.009 tr|Q84Y09|Q84Y09_FLABI Carbonic anhydrase OS=Flaveria bidentis P... 43 0.009 tr|Q3E9H5|Q3E9H5_ARATH Carbonic anhydrase OS=Arabidopsis thalian... 43 0.009 tr|Q2V377|Q2V377_ARATH Carbonic anhydrase OS=Arabidopsis thalian... 43 0.009 tr|Q2V376|Q2V376_ARATH Carbonic anhydrase OS=Arabidopsis thalian... 43 0.009
>tr|B7FL34|B7FL34_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 278
Score = 48.9 bits (115), Expect = 1e-04 Identities = 27/47 (57%), Positives = 30/47 (63%), Gaps = 6/47 (12%) Frame = +1
Query: 169 EAFVLRHIGNMVPP*TGNSCSSAASAIEYAVLHLKV------NASCC 291 EAFV+R+I NMVPP S A +AIEYAVLHLKV SCC Sbjct: 126 EAFVVRNIANMVPPFDKTKYSGAGAAIEYAVLHLKVENIVVIGHSCC 172
>tr|Q84Y10|Q84Y10_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=1 Length = 279
Score = 47.4 bits (111), Expect = 4e-04 Identities = 27/47 (57%), Positives = 30/47 (63%), Gaps = 6/47 (12%) Frame = +1
Query: 169 EAFVLRHIGNMVPP*TGNSCSSAASAIEYAVLHLKV------NASCC 291 EAFV+R+I NMVPP S A +AIEYAVLHLKV SCC Sbjct: 127 EAFVVRNIANMVPPYDTIKHSGAGAAIEYAVLHLKVENIVVIGHSCC 173
>tr|Q2Q064|Q2Q064_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1 Length = 281
Score = 47.4 bits (111), Expect = 4e-04 Identities = 27/47 (57%), Positives = 30/47 (63%), Gaps = 6/47 (12%) Frame = +1
Query: 169 EAFVLRHIGNMVPP*TGNSCSSAASAIEYAVLHLKV------NASCC 291 EAFV+R+I NMVPP S A +AIEYAVLHLKV SCC Sbjct: 130 EAFVVRNIANMVPPYDTIKHSGAGAAIEYAVLHLKVENIVVIGHSCC 176
>tr|A9PEY8|A9PEY8_POPTR Carbonic anhydrase OS=Populus trichocarpa PE=2 SV=1 Length = 256
Score = 46.6 bits (109), Expect = 6e-04 Identities = 25/47 (53%), Positives = 29/47 (61%), Gaps = 6/47 (12%) Frame = +1
Query: 169 EAFVLRHIGNMVPP*TGNSCSSAASAIEYAVLHLKV------NASCC 291 EAF++R+I NMVPP S +AIEYAVLHLKV SCC Sbjct: 104 EAFMIRNIANMVPPYDKTKYSGVGAAIEYAVLHLKVENIVVIGHSCC 150
>tr|A9PED7|A9PED7_POPTR Carbonic anhydrase OS=Populus trichocarpa PE=2 SV=1 Length = 256
Score = 46.6 bits (109), Expect = 6e-04 Identities = 25/47 (53%), Positives = 29/47 (61%), Gaps = 6/47 (12%) Frame = +1
Query: 169 EAFVLRHIGNMVPP*TGNSCSSAASAIEYAVLHLKV------NASCC 291 EAF++R+I NMVPP S +AIEYAVLHLKV SCC Sbjct: 104 EAFMIRNIANMVPPYDKTKYSGVGAAIEYAVLHLKVENIVVIGHSCC 150
>tr|A1BQP3|A1BQP3_CUCSA Carbonic anhydrase (Fragment) OS=Cucumis sativus PE=2 SV=1 Length = 99
Score = 46.2 bits (108), Expect = 8e-04 Identities = 22/36 (61%), Positives = 27/36 (75%) Frame = +1
Query: 169 EAFVLRHIGNMVPP*TGNSCSSAASAIEYAVLHLKV 276 EAFV+R++ N+VPP + S SAIEYAVLHLKV Sbjct: 20 EAFVVRNVANLVPPYDQDKYSGTGSAIEYAVLHLKV 55
>tr|Q5NE21|Q5NE21_SOLLC Carbonic anhydrase OS=Solanum lycopersicum GN=ca1 PE=2 SV=1 Length = 268
Score = 45.8 bits (107), Expect = 0.001 Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 6/47 (12%) Frame = +1
Query: 169 EAFVLRHIGNMVPP*TGNSCSSAASAIEYAVLHLKV------NASCC 291 EAFV+R+I NMVPP S +A+EYAV+HLKV SCC Sbjct: 116 EAFVVRNIANMVPPYDQTKYSGVGAAVEYAVVHLKVENILVIGHSCC 162
>tr|B8LNL1|B8LNL1_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 232
Score = 45.8 bits (107), Expect = 0.001 Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 6/59 (10%) Frame = +1
Query: 133 CSMHCV*AVDLCEAFVLRHIGNMVPP*TGNSCSSAASAIEYAVLHLKV------NASCC 291 C H + +L EAFV+R+I NMV P N ++A+EYAVLHLKV SCC Sbjct: 108 CPSHVL-KFNLGEAFVVRNIANMVAPYEKNEYPGTSAAVEYAVLHLKVEHILVMGHSCC 165
>tr|A9PJH1|A9PJH1_POPJC Carbonic anhydrase OS=Populus jackii PE=2 SV=1 Length = 321
Score = 45.8 bits (107), Expect = 0.001 Identities = 22/36 (61%), Positives = 26/36 (72%) Frame = +1
Query: 169 EAFVLRHIGNMVPP*TGNSCSSAASAIEYAVLHLKV 276 EAFVLR++ NMVPP + +AIEYAVLHLKV Sbjct: 169 EAFVLRNVANMVPPYDQTKYAGVGAAIEYAVLHLKV 204
>tr|A9PIY3|A9PIY3_POPJC Carbonic anhydrase OS=Populus jackii PE=2 SV=1 Length = 258
Score = 45.8 bits (107), Expect = 0.001 Identities = 22/36 (61%), Positives = 26/36 (72%) Frame = +1
Query: 169 EAFVLRHIGNMVPP*TGNSCSSAASAIEYAVLHLKV 276 EAFVLR++ NMVPP + +AIEYAVLHLKV Sbjct: 106 EAFVLRNVANMVPPYDQTKYAGVGAAIEYAVLHLKV 141
|