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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962400
Clone id TST39A01NGRL0013_M08
Library
Length 556
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0013_M08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GTATCGCGATCCCTGGATGACGCCAAGCGGAAAGTCATGTCTTTTTTCAAGGATTGCTGC
AGGGCCCTGCCCACCATCATACACGTGTACATTCTCGACGAGACCATTTCCCGTGCAGAA
CTGCGCTCCAAGATATCTTCTGAGTTCCGCAAGCATGAGAACGTTCAGAACCCCCAGGCA
TCGAGGTTGCTTTCAGCAGGCAAGCACTCAAATTATGCAACCAACTTAGGAAGAATATTG
TTTGTTAAAGATTCATCATAGGAACGGTTTGAAGGAAAAAGAATGTCTGATTCTCTCGTG
GGGGGGGGGGAAAATTAACATTAATGGATTGTAAGCAAATTTGCATGAGCATTCTATTTT
TCTTGTAATTCTCGCACCGACTTATTGTTTATTATGTGGGGAGAACCTCACCTGTTTCGT
GTGCCTATATGGAAGTAAACAAAATGTTTGTGAACAAAGGAGAGGGGAAGAACTAAATAT
TTTTTTTTTAAAATAAAAAAGCAAACTTTTTTTTTTTTTTTTTGTCTTATGGTTGGGGGG
GGGGGGGGGGGGGGGG
■■Homology search results ■■ -
sp_hit_id Q9CQZ5
Definition sp|Q9CQZ5|NDUA6_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Mus musculus
Align length 63
Score (bit) 40.4
E-value 0.006
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962400|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_M08, 5'
         (556 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CQZ5|NDUA6_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha su...    40   0.006
sp|Q02366|NDUA6_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha su...    40   0.006
sp|P62383|DISG_TRIGA Disintegrin trigramin-gamma OS=Trimeresurus...    31   3.6  
sp|P62384|DISG_TRIAB Disintegrin albolabrin OS=Trimeresurus albo...    31   3.6  

>sp|Q9CQZ5|NDUA6_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha
           subcomplex subunit 6 OS=Mus musculus GN=Ndufa6 PE=1 SV=1
          Length = 131

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 21/63 (33%), Positives = 36/63 (57%)
 Frame = +1

Query: 4   SRSLDDAKRKVMSFFKDCCRALPTIIHVYILDETISRAELRSKISSEFRKHENVQNPQAS 183
           SR L++AKR+V   ++   R +P  +H+  LD T+ +   R K+   F K+ +V +P+  
Sbjct: 25  SRDLNEAKRRVRELYRAWYREVPNTVHLMQLDITVKQG--RDKVREMFMKNAHVTDPRVV 82

Query: 184 RLL 192
            LL
Sbjct: 83  DLL 85


>sp|Q02366|NDUA6_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha
           subcomplex subunit 6 OS=Bos taurus GN=NDUFA6 PE=1 SV=2
          Length = 128

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 20/63 (31%), Positives = 38/63 (60%)
 Frame = +1

Query: 4   SRSLDDAKRKVMSFFKDCCRALPTIIHVYILDETISRAELRSKISSEFRKHENVQNPQAS 183
           SR +++AKR+V   ++   R +P  +H++ LD  IS  + R K+   F+K+ ++ +P+  
Sbjct: 22  SRDMNEAKRRVRELYRAWYREVPNTVHLFQLD--ISVKQGRDKVREMFKKNAHITDPRVV 79

Query: 184 RLL 192
            LL
Sbjct: 80  DLL 82


>sp|P62383|DISG_TRIGA Disintegrin trigramin-gamma OS=Trimeresurus
           gramineus PE=1 SV=1
          Length = 73

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 395 CGENLTCFVCLYGSKQNVCEQRRGEELN 478
           CGE L C  C +  K  +C + RG++L+
Sbjct: 29  CGEGLCCDQCSFMKKGTICRRARGDDLD 56


>sp|P62384|DISG_TRIAB Disintegrin albolabrin OS=Trimeresurus
           albolabris PE=1 SV=1
          Length = 73

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 395 CGENLTCFVCLYGSKQNVCEQRRGEELN 478
           CGE L C  C +  K  +C + RG++L+
Sbjct: 29  CGEGLCCDQCSFMKKGTICRRARGDDLD 56
tr_hit_id B4FHZ4
Definition tr|B4FHZ4|B4FHZ4_MAIZE NADH ubiquinone oxidoreductase B14 subunit OS=Zea mays
Align length 63
Score (bit) 66.6
E-value 8.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962400|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_M08, 5'
         (556 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4FHZ4|B4FHZ4_MAIZE NADH ubiquinone oxidoreductase B14 subuni...    67   8e-10
tr|A9T0K9|A9T0K9_PHYPA Predicted protein OS=Physcomitrella paten...    66   1e-09
tr|Q8GS72|Q8GS72_ORYSJ Os07g0640100 protein OS=Oryza sativa subs...    63   9e-09
tr|A2YP57|A2YP57_ORYSI Putative uncharacterized protein OS=Oryza...    63   9e-09
tr|A9PBX8|A9PBX8_POPTR Putative uncharacterized protein OS=Popul...    61   4e-08
tr|A9P0K9|A9P0K9_PICSI Putative uncharacterized protein OS=Picea...    61   5e-08
tr|A9RFV7|A9RFV7_PHYPA Predicted protein OS=Physcomitrella paten...    59   2e-07
tr|B7FMX5|B7FMX5_MEDTR Putative uncharacterized protein OS=Medic...    57   7e-07
tr|B7FMK0|B7FMK0_MEDTR Putative uncharacterized protein OS=Medic...    57   7e-07
tr|A7Q5C5|A7Q5C5_VITVI Chromosome undetermined scaffold_53, whol...    57   9e-07
tr|Q9LHI0|Q9LHI0_ARATH Arabidopsis thaliana genomic DNA, chromos...    54   7e-06
tr|Q5AYS3|Q5AYS3_EMENI Putative uncharacterized protein OS=Emeri...    43   0.013
tr|A4QNG0|A4QNG0_XENTR Putative uncharacterized protein LOC55010...    42   0.017
tr|B5G1U3|B5G1U3_TAEGU Putative NADH dehydrogenase 1 alpha subco...    42   0.022
tr|B0WI32|B0WI32_CULQU NADH dehydrogenase 1 alpha subcomplex sub...    41   0.038
tr|Q8AW03|Q8AW03_DANRE NADH dehydrogenase (Ubiquinone) 1 alpha s...    39   0.14 
tr|Q5HZN3|Q5HZN3_XENLA LOC496350 protein OS=Xenopus laevis GN=nd...    39   0.25 
tr|Q4SCH8|Q4SCH8_TETNG Chromosome undetermined SCAF14653, whole ...    39   0.25 
tr|Q6UKY9|Q6UKY9_CHLRE NADH:ubiquinone oxidoreductase B14 subuni...    36   1.6  
tr|A9V0R3|A9V0R3_MONBE Predicted protein OS=Monosiga brevicollis...    36   1.6  
tr|Q01DI5|Q01DI5_OSTTA NADH:ubiquinone oxidoreductase B14 subuni...    35   3.6  
tr|B5X7Q3|B5X7Q3_SALSA NADH dehydrogenase 1 alpha subcomplex sub...    34   4.6  
tr|B5X7I8|B5X7I8_SALSA NADH dehydrogenase 1 alpha subcomplex sub...    34   4.6  
tr|Q7YU95|Q7YU95_IXORI NADH-ubiquinone oxidoreductase (Fragment)...    34   6.1  
tr|Q4DVZ3|Q4DVZ3_TRYCR Small GTP-binding protein, putative OS=Tr...    34   6.1  

>tr|B4FHZ4|B4FHZ4_MAIZE NADH ubiquinone oxidoreductase B14 subunit
           OS=Zea mays PE=2 SV=1
          Length = 132

 Score = 66.6 bits (161), Expect = 8e-10
 Identities = 27/63 (42%), Positives = 46/63 (73%)
 Frame = +1

Query: 4   SRSLDDAKRKVMSFFKDCCRALPTIIHVYILDETISRAELRSKISSEFRKHENVQNPQAS 183
           S SL++A+ +V  FFK  CR++PT++ +Y LD+ ++ ++LRS I+ E RK++NV NP+  
Sbjct: 14  SASLEEARHRVFDFFKQACRSIPTVMEIYNLDDVVTPSQLRSTIAKEIRKNQNVTNPKVI 73

Query: 184 RLL 192
            +L
Sbjct: 74  DML 76


>tr|A9T0K9|A9T0K9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_190471 PE=4 SV=1
          Length = 138

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 30/58 (51%), Positives = 45/58 (77%)
 Frame = +1

Query: 4   SRSLDDAKRKVMSFFKDCCRALPTIIHVYILDETISRAELRSKISSEFRKHENVQNPQ 177
           SRSL++A+++   FF++ CRALP+I+  Y L E I+ ++LRSKI+SEFRKH +  NP+
Sbjct: 17  SRSLEEAQQRATDFFREACRALPSIMERYNLYEVITLSDLRSKIASEFRKHHHNTNPK 74


>tr|Q8GS72|Q8GS72_ORYSJ Os07g0640100 protein OS=Oryza sativa subsp.
           japonica GN=P0524G08.101 PE=2 SV=1
          Length = 131

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 26/63 (41%), Positives = 45/63 (71%)
 Frame = +1

Query: 4   SRSLDDAKRKVMSFFKDCCRALPTIIHVYILDETISRAELRSKISSEFRKHENVQNPQAS 183
           S SL++A+ +V  FF+  CRA+P+I+ +Y LD+ ++ ++LRS I+ E RK++ V NP+  
Sbjct: 14  SASLEEARHRVFDFFRQACRAIPSIMEIYNLDDVVTPSQLRSTIAKEIRKNQGVTNPKVI 73

Query: 184 RLL 192
            +L
Sbjct: 74  DML 76


>tr|A2YP57|A2YP57_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_27047 PE=4 SV=1
          Length = 131

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 26/63 (41%), Positives = 45/63 (71%)
 Frame = +1

Query: 4   SRSLDDAKRKVMSFFKDCCRALPTIIHVYILDETISRAELRSKISSEFRKHENVQNPQAS 183
           S SL++A+ +V  FF+  CRA+P+I+ +Y LD+ ++ ++LRS I+ E RK++ V NP+  
Sbjct: 14  SASLEEARHRVFDFFRQACRAIPSIMEIYNLDDVVTPSQLRSTIAKEIRKNQGVTNPKVI 73

Query: 184 RLL 192
            +L
Sbjct: 74  DML 76


>tr|A9PBX8|A9PBX8_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 136

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 25/63 (39%), Positives = 46/63 (73%)
 Frame = +1

Query: 4   SRSLDDAKRKVMSFFKDCCRALPTIIHVYILDETISRAELRSKISSEFRKHENVQNPQAS 183
           SRS+++A+ +V  FFK  CR+LP ++ +Y LD+ +++++LRS ISS+ RK+ ++ N +  
Sbjct: 18  SRSVEEARARVFDFFKLACRSLPAVMDIYNLDDVVNKSQLRSAISSQIRKNSHITNAKVI 77

Query: 184 RLL 192
            +L
Sbjct: 78  DML 80


>tr|A9P0K9|A9P0K9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 133

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 25/63 (39%), Positives = 46/63 (73%)
 Frame = +1

Query: 4   SRSLDDAKRKVMSFFKDCCRALPTIIHVYILDETISRAELRSKISSEFRKHENVQNPQAS 183
           S+SL++A+++V  FF++ CR++P I+  Y L E I+ ++LRS ++++FRK  +V NP+  
Sbjct: 14  SQSLEEARKRVFHFFREACRSIPQIMETYNLHEVITTSQLRSVVAAQFRKQAHVTNPKVI 73

Query: 184 RLL 192
            +L
Sbjct: 74  DML 76


>tr|A9RFV7|A9RFV7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_174407 PE=4 SV=1
          Length = 137

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 28/63 (44%), Positives = 44/63 (69%)
 Frame = +1

Query: 4   SRSLDDAKRKVMSFFKDCCRALPTIIHVYILDETISRAELRSKISSEFRKHENVQNPQAS 183
           S SL +A+++   FF++ CRALP+I+  Y L + I+ ++LRSKI+ EFRKH +  NP+  
Sbjct: 17  SGSLGEAQQRATDFFRESCRALPSIMERYNLYDVITLSDLRSKIAFEFRKHHHNTNPKVI 76

Query: 184 RLL 192
            +L
Sbjct: 77  DML 79


>tr|B7FMX5|B7FMX5_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 133

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 24/63 (38%), Positives = 45/63 (71%)
 Frame = +1

Query: 4   SRSLDDAKRKVMSFFKDCCRALPTIIHVYILDETISRAELRSKISSEFRKHENVQNPQAS 183
           S +L +A+++V  FF+  CR+LPT++ VY L +  + ++LRS I++E RK++++ NP+  
Sbjct: 14  SVNLSEARQRVFEFFRSACRSLPTVMEVYNLYDVATVSQLRSTIAAEIRKNDHITNPKVI 73

Query: 184 RLL 192
            +L
Sbjct: 74  DML 76


>tr|B7FMK0|B7FMK0_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 133

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 24/63 (38%), Positives = 45/63 (71%)
 Frame = +1

Query: 4   SRSLDDAKRKVMSFFKDCCRALPTIIHVYILDETISRAELRSKISSEFRKHENVQNPQAS 183
           S +L +A+++V  FF+  CR+LPT++ VY L +  + ++LRS I++E RK++++ NP+  
Sbjct: 14  SVNLSEARQRVFEFFRSACRSLPTVMEVYNLYDVATVSQLRSTIAAEIRKNDHITNPKVI 73

Query: 184 RLL 192
            +L
Sbjct: 74  DML 76


>tr|A7Q5C5|A7Q5C5_VITVI Chromosome undetermined scaffold_53, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00030884001 PE=4 SV=1
          Length = 133

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 25/63 (39%), Positives = 44/63 (69%)
 Frame = +1

Query: 4   SRSLDDAKRKVMSFFKDCCRALPTIIHVYILDETISRAELRSKISSEFRKHENVQNPQAS 183
           S +L++A+ +   FFK  CR++P I+ +Y LD+ ++ ++LRS I+SEFRK+ +V N +  
Sbjct: 15  SANLEEARSRTFDFFKMVCRSIPKIMDIYNLDDVVTVSQLRSIIASEFRKNSHVTNTKVI 74

Query: 184 RLL 192
            +L
Sbjct: 75  DML 77