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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962179
Clone id TST39A01NGRL0013_C17
Library
Length 590
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0013_C17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CAGCTTAATTCTAGGTTACTCTTGTCAGCTGACGCAGACCCTTACTAGCACTACCCAAGA
AAGTCTCTCTCTCTCTCTCTCTCTGTCTCTCCCTCTCTTTCACTGGACTTTGGACTAGAC
ATCTCCACACGGGCAAAGATCATGGCTGCAATTGCAGGCCTGCTGCAGGATATGGCACCT
GCATGTTTGCTCAAACTTCACCTCTAGCCTTCTTTTCTGTACCATTTGCTTGCTAATCCA
TCCCAATTCCTCATCCCGATATCACCTTCATTCACCCATCACCAGTGCACCACACTCACT
TTCACATGTACACTACAGTTACAACAATGAGAGCACCACCCCCACCATTAACAATGTCAG
CAACTTCACATTACCCACAATAAATATCATGAGTAGAGCACCATGCCCTGCATGTAAATT
GACGTCGTAATTCGAGGCCGTGCCACCAAGCATTTCCTATAATCGCATACATTATGGCCG
ACAAAAGCAGAGAGCTCTTCCTCATAGGCGAGTACTGCAGGGCCGTCGATGCCTCTCCAT
CCCATGCCGGGATTGGCCAACCTGACTACTGCAACCTGGGTTTCTCTCCT
■■Homology search results ■■ -
sp_hit_id Q5R476
Definition sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii
Align length 58
Score (bit) 33.9
E-value 0.62
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962179|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_C17, 5'
         (590 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pon...    34   0.62 
sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Hom...    34   0.62 
sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus...    32   3.1  
sp|Q48TK6|GLYA_STRPM Serine hydroxymethyltransferase OS=Streptoc...    32   3.1  
sp|Q1JLP8|GLYA_STRPC Serine hydroxymethyltransferase OS=Streptoc...    32   3.1  
sp|Q1JBR5|GLYA_STRPB Serine hydroxymethyltransferase OS=Streptoc...    32   3.1  
sp|A1VEK5|GLYA_DESVV Serine hydroxymethyltransferase OS=Desulfov...    32   3.1  
sp|Q72CT0|GLYA_DESVH Serine hydroxymethyltransferase OS=Desulfov...    32   3.1  
sp|Q6HAW9|GLYA_BACHK Serine hydroxymethyltransferase OS=Bacillus...    31   5.3  
sp|Q630T3|GLYA_BACCZ Serine hydroxymethyltransferase OS=Bacillus...    31   5.3  
sp|Q814V2|GLYA_BACCR Serine hydroxymethyltransferase OS=Bacillus...    31   5.3  
sp|A7GV66|GLYA_BACCN Serine hydroxymethyltransferase OS=Bacillus...    31   5.3  
sp|Q72XD7|GLYA_BACC1 Serine hydroxymethyltransferase OS=Bacillus...    31   5.3  
sp|Q81JY4|GLYA_BACAN Serine hydroxymethyltransferase OS=Bacillus...    31   5.3  
sp|A0RLA3|GLYA_BACAH Serine hydroxymethyltransferase OS=Bacillus...    31   5.3  
sp|Q59VW7|TIM21_CANAL Mitochondrial import inner membrane transl...    30   6.9  
sp|Q96D15|RCN3_HUMAN Reticulocalbin-3 OS=Homo sapiens GN=RCN3 PE...    30   6.9  
sp|O95948|ONEC2_HUMAN One cut domain family member 2 OS=Homo sap...    30   6.9  
sp|P09065|HME1_MOUSE Homeobox protein engrailed-1 OS=Mus musculu...    30   6.9  
sp|Q5NN85|GLYA_ZYMMO Serine hydroxymethyltransferase OS=Zymomona...    30   6.9  
sp|A0LI16|GLYA_SYNFM Serine hydroxymethyltransferase OS=Syntroph...    30   6.9  
sp|Q2RFW7|GLYA_MOOTA Serine hydroxymethyltransferase OS=Moorella...    30   6.9  
sp|Q9UPW0|FOXJ3_HUMAN Forkhead box protein J3 OS=Homo sapiens GN...    30   6.9  
sp|P28340|DPOD1_HUMAN DNA polymerase delta catalytic subunit OS=...    30   6.9  
sp|O74475|BGS4_SCHPO 1,3-beta-glucan synthase component bgs4 OS=...    30   6.9  
sp|Q53W92|SURE_THET8 5'-nucleotidase surE OS=Thermus thermophilu...    30   9.0  
sp|Q8BH97|RCN3_MOUSE Reticulocalbin-3 OS=Mus musculus GN=Rcn3 PE...    30   9.0  
sp|Q2KJ39|RCN3_BOVIN Reticulocalbin-3 OS=Bos taurus GN=RCN3 PE=2...    30   9.0  
sp|Q2NQH3|GLPG_SODGM Rhomboid protease glpG OS=Sodalis glossinid...    30   9.0  

>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo
           abelii GN=RNF111 PE=2 SV=1
          Length = 986

 Score = 33.9 bits (76), Expect = 0.62
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = +3

Query: 249 PHPDITFIHPSPVHHTHFHMYTTVTTMR-APPPPLTMSATS-----HYPQ*IS*VEHH 404
           P P + ++ P PVH  H  + +  T+   APPPP  +++T+     H P     + HH
Sbjct: 677 PPPQVDYVIPHPVHAFHSQISSHATSHPVAPPPPTHLASTAAPIPQHLPPTHQPISHH 734


>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo
           sapiens GN=RNF111 PE=1 SV=2
          Length = 994

 Score = 33.9 bits (76), Expect = 0.62
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = +3

Query: 249 PHPDITFIHPSPVHHTHFHMYTTVTTMR-APPPPLTMSATS-----HYPQ*IS*VEHH 404
           P P + ++ P PVH  H  + +  T+   APPPP  +++T+     H P     + HH
Sbjct: 677 PPPQVDYVIPHPVHAFHSQISSHATSHPVAPPPPTHLASTAAPIPQHLPPTHQPISHH 734


>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus
           musculus GN=Rnf111 PE=1 SV=1
          Length = 989

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
 Frame = +3

Query: 249 PHPDITFIHPSPVHHTHFHMYTTVTTMR-APPPPLTMSATS-----HYPQ*IS*VEHH 404
           P P + ++ P PVH  H  + +   +   APPPP  + +T+     H P     + HH
Sbjct: 672 PPPQVDYVIPHPVHAFHSQISSHAASHPVAPPPPTHLGSTAAPIPQHLPPAHQPISHH 729


>sp|Q48TK6|GLYA_STRPM Serine hydroxymethyltransferase
           OS=Streptococcus pyogenes serotype M28 GN=glyA PE=3 SV=1
          Length = 420

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 270 IHPSPVHHTHFHMYTTVTTMRAP 338
           +HPSPVH+ H    TT  T+R P
Sbjct: 215 VHPSPVHYAHIVTSTTHKTLRGP 237


>sp|Q1JLP8|GLYA_STRPC Serine hydroxymethyltransferase
           OS=Streptococcus pyogenes serotype M12 (strain MGAS9429)
           GN=glyA PE=3 SV=1
          Length = 420

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 270 IHPSPVHHTHFHMYTTVTTMRAP 338
           +HPSPVH+ H    TT  T+R P
Sbjct: 215 VHPSPVHYAHIVTSTTHKTLRGP 237


>sp|Q1JBR5|GLYA_STRPB Serine hydroxymethyltransferase
           OS=Streptococcus pyogenes serotype M12 (strain MGAS2096)
           GN=glyA PE=3 SV=1
          Length = 420

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 270 IHPSPVHHTHFHMYTTVTTMRAP 338
           +HPSPVH+ H    TT  T+R P
Sbjct: 215 VHPSPVHYAHIVTSTTHKTLRGP 237


>sp|A1VEK5|GLYA_DESVV Serine hydroxymethyltransferase
           OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
           GN=glyA PE=3 SV=1
          Length = 412

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 273 HPSPVHHTHFHMYTTVTTMRAPPPPLTMS 359
           HPSPV H H+   TT  T+R P   + +S
Sbjct: 210 HPSPVQHAHYTTTTTHKTLRGPRGGMILS 238


>sp|Q72CT0|GLYA_DESVH Serine hydroxymethyltransferase
           OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC
           29579 / NCIMB 8303) GN=glyA PE=3 SV=1
          Length = 412

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 273 HPSPVHHTHFHMYTTVTTMRAPPPPLTMS 359
           HPSPV H H+   TT  T+R P   + +S
Sbjct: 210 HPSPVQHAHYTTTTTHKTLRGPRGGMILS 238


>sp|Q6HAW9|GLYA_BACHK Serine hydroxymethyltransferase OS=Bacillus
           thuringiensis subsp. konkukian GN=glyA PE=3 SV=1
          Length = 414

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 270 IHPSPVHHTHFHMYTTVTTMRAP 338
           +HP+PV H HF   TT  T+R P
Sbjct: 210 LHPNPVPHAHFVTTTTHKTLRGP 232


>sp|Q630T3|GLYA_BACCZ Serine hydroxymethyltransferase OS=Bacillus
           cereus (strain ZK / E33L) GN=glyA PE=3 SV=1
          Length = 414

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 270 IHPSPVHHTHFHMYTTVTTMRAP 338
           +HP+PV H HF   TT  T+R P
Sbjct: 210 LHPNPVPHAHFVTTTTHKTLRGP 232
tr_hit_id Q2HF17
Definition tr|Q2HF17|Q2HF17_CHAGB Putative uncharacterized protein OS=Chaetomium globosum
Align length 57
Score (bit) 39.7
E-value 0.13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962179|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_C17, 5'
         (590 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2HF17|Q2HF17_CHAGB Putative uncharacterized protein OS=Chaet...    40   0.13 
tr|Q25A06|Q25A06_ORYSA H0821G03.10 protein OS=Oryza sativa GN=H0...    39   0.22 
tr|B4L7A2|B4L7A2_DROMO GI14084 OS=Drosophila mojavensis GN=GI140...    39   0.22 
tr|A7S4H5|A7S4H5_NEMVE Predicted protein (Fragment) OS=Nematoste...    37   1.1  
tr|Q67WF6|Q67WF6_ORYSJ Os06g0637500 protein OS=Oryza sativa subs...    36   1.4  
tr|A3BDW3|A3BDW3_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.4  
tr|A2YFE4|A2YFE4_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.4  
tr|A9V840|A9V840_MONBE Predicted protein OS=Monosiga brevicollis...    36   1.4  
tr|A1SYT1|A1SYT1_PSYIN Membrane bound O-acyl transferase, MBOAT ...    35   4.1  
tr|B5JKP7|B5JKP7_9BACT Histidine kinase family OS=Verrucomicrobi...    35   4.1  
tr|A3LT22|A3LT22_PICST Predicted protein OS=Pichia stipitis GN=P...    35   4.1  
tr|A6QLE0|A6QLE0_BOVIN RNF111 protein OS=Bos taurus GN=RNF111 PE...    34   5.4  
tr|B4JP02|B4JP02_DROGR GH24052 OS=Drosophila grimshawi GN=GH2405...    34   5.4  
tr|A7SM63|A7SM63_NEMVE Predicted protein OS=Nematostella vectens...    34   5.4  
tr|B6BJU0|B6BJU0_9PROT Ser/Thr protein phosphatase family protei...    33   9.2  
tr|Q94G61|Q94G61_SOLLC Verticillium wilt disease resistance prot...    33   9.2  
tr|Q93V91|Q93V91_SOLLC Verticillium wilt disease resistance prot...    33   9.2  
tr|A9RTG0|A9RTG0_PHYPA Predicted protein (Fragment) OS=Physcomit...    33   9.2  
tr|Q9VW27|Q9VW27_DROME Teyrha-meyrha, isoform A OS=Drosophila me...    33   9.2  
tr|Q8SY01|Q8SY01_DROME RE33994p OS=Drosophila melanogaster GN=te...    33   9.2  
tr|Q17JQ0|Q17JQ0_AEDAE Putative uncharacterized protein OS=Aedes...    33   9.2  
tr|B7Z079|B7Z079_DROME Teyrha-meyrha, isoform B OS=Drosophila me...    33   9.2  
tr|B4PGD6|B4PGD6_DROYA GE22476 OS=Drosophila yakuba GN=GE22476 P...    33   9.2  
tr|B4LCV8|B4LCV8_DROVI GJ12912 OS=Drosophila virilis GN=GJ12912 ...    33   9.2  
tr|B3N3J3|B3N3J3_DROER GG10851 OS=Drosophila erecta GN=GG10851 P...    33   9.2  
tr|Q0U7N6|Q0U7N6_PHANO Putative uncharacterized protein OS=Phaeo...    33   9.2  
tr|A7TK66|A7TK66_VANPO Putative uncharacterized protein OS=Vande...    33   9.2  

>tr|Q2HF17|Q2HF17_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_01187 PE=4 SV=1
          Length = 454

 Score = 39.7 bits (91), Expect = 0.13
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
 Frame = +3

Query: 237 SIPIPHPDITFIHPSPVHHTHFHM----------YTTVTTMRAPPPPLTMSATSHYP 377
           ++P PHP   +  PSPVH  H H+          Y + TTM+   P LT+SAT+  P
Sbjct: 249 TLPPPHP---YSEPSPVHRHHNHLDHDTIEKSHYYHSFTTMKPSRPDLTLSATTPVP 302


>tr|Q25A06|Q25A06_ORYSA H0821G03.10 protein OS=Oryza sativa
           GN=H0821G03.10 PE=4 SV=1
          Length = 1779

 Score = 38.9 bits (89), Expect = 0.22
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +2

Query: 140 SWLQLQACCRIWHLHVCSNFTSSLLFCTICLLIHP---NSSSRYHLHSPITSAPHSLSHV 310
           SW Q   CC +W L VC N T  +    +  + +P     S R+HL+  + SA H L  +
Sbjct: 137 SWGQGDDCC-VWELVVCENSTRRISHLHLSGIYYPPISTPSDRWHLNLSVFSAFHELQFL 195

Query: 311 HYSYNNEST 337
             S+N  S+
Sbjct: 196 DLSWNYPSS 204


>tr|B4L7A2|B4L7A2_DROMO GI14084 OS=Drosophila mojavensis GN=GI14084
           PE=4 SV=1
          Length = 587

 Score = 38.9 bits (89), Expect = 0.22
 Identities = 26/93 (27%), Positives = 40/93 (43%)
 Frame = +2

Query: 239 HPNSSSRYHLHSPITSAPHSLSHVHYSYNNESTTPTINNVSNFTLPTINIMSRAPCPACK 418
           HPN +   H HS     PH   H H +Y N +TT TI N+ + T      ++    P   
Sbjct: 293 HPNQNPNPHTHSLPHHHPHLNQHQHIAYINSTTTTTIANLYSQTRKRQFDVASLLAPDVH 352

Query: 419 LTS*FEAVPPSISYNRIHYGRQKQRALPHRRVL 517
           +    E    S  +  I   + K++ L HR ++
Sbjct: 353 IVDIVEGEDSSTQHTVITKVQVKKQQLFHRELV 385


>tr|A7S4H5|A7S4H5_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g104376 PE=4 SV=1
          Length = 150

 Score = 36.6 bits (83), Expect = 1.1
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = +3

Query: 195 TSPLAFFSVPFAC*SIPIPHPDITFIHPSPVHHTHFHMYT-----TVTTMRAPPPPLTMS 359
           +SP    S P    +  +P+P+ TF HPS  +  H  + T       T   +P PPL+  
Sbjct: 53  SSPKPSLSQPHISYNPSLPYPNHTFHHPSLPYPNHTFLITQASPIPTTHFSSPKPPLSQP 112

Query: 360 ATSHYP 377
             SH+P
Sbjct: 113 HISHHP 118


>tr|Q67WF6|Q67WF6_ORYSJ Os06g0637500 protein OS=Oryza sativa subsp.
           japonica GN=P0523F01.10 PE=2 SV=1
          Length = 311

 Score = 36.2 bits (82), Expect = 1.4
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +3

Query: 222 PFAC*SIPIPHPDITFIHPSPVHHTHFHMYTTVTTMRAPPPPLTMSATSHYP 377
           PF   S+ +P  D  F H S   H+HF    +  +   PPPP   ++T+ YP
Sbjct: 203 PFTSLSLSLPGTDQRFNHDSA--HSHFQELPSSPSPPPPPPPAAAASTTQYP 252


>tr|A3BDW3|A3BDW3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_021235 PE=4 SV=1
          Length = 319

 Score = 36.2 bits (82), Expect = 1.4
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +3

Query: 222 PFAC*SIPIPHPDITFIHPSPVHHTHFHMYTTVTTMRAPPPPLTMSATSHYP 377
           PF   S+ +P  D  F H S   H+HF    +  +   PPPP   ++T+ YP
Sbjct: 203 PFTSLSLSLPGTDQRFNHDSA--HSHFQELPSSPSPPPPPPPAAAASTTQYP 252


>tr|A2YFE4|A2YFE4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_23829 PE=4 SV=1
          Length = 311

 Score = 36.2 bits (82), Expect = 1.4
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +3

Query: 222 PFAC*SIPIPHPDITFIHPSPVHHTHFHMYTTVTTMRAPPPPLTMSATSHYP 377
           PF   S+ +P  D  F H S   H+HF    +  +   PPPP   ++T+ YP
Sbjct: 203 PFTSLSLSLPGTDQRFNHDSA--HSHFQELPSSPSPPPPPPPAAAASTTQYP 252


>tr|A9V840|A9V840_MONBE Predicted protein OS=Monosiga brevicollis
           GN=33876 PE=3 SV=1
          Length = 965

 Score = 36.2 bits (82), Expect = 1.4
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = +3

Query: 183 MFAQTSPLAFFSVPFAC*SIPIPHPDITFIHPSPVHHTHFHMYTTVTTMRAPPPPLTMSA 362
           +FA+TSPL F   P    ++P+P P      P P  HTH H++T+++   +    L++S 
Sbjct: 76  IFAKTSPLTFHLAPPRP-TLPLPPP------PHPHTHTHTHLFTSLSLSLSLSNSLSLSQ 128

Query: 363 T 365
           T
Sbjct: 129 T 129


>tr|A1SYT1|A1SYT1_PSYIN Membrane bound O-acyl transferase, MBOAT
           family protein OS=Psychromonas ingrahamii (strain 37)
           GN=Ping_2944 PE=4 SV=1
          Length = 403

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -2

Query: 520 LQYSPMRKSSLLLSAIMYAIIGNAWWHGL 434
           L Y+PMRK   LLSA++   + +A WHG+
Sbjct: 237 LFYNPMRKKYSLLSALLVVYVASAMWHGV 265


>tr|B5JKP7|B5JKP7_9BACT Histidine kinase family OS=Verrucomicrobiae
           bacterium DG1235 GN=VDG1235_945 PE=4 SV=1
          Length = 442

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +3

Query: 243 PIPHPDITFIHPSPVHHTHFHMYTTVTTMRAPPPPLTMSA 362
           PIP P   F  PS + H+ F ++ ++ T+ +PP P +++A
Sbjct: 43  PIPTPTRAFSTPSQIPHSLFTLHFSLFTLHSPPVPASLTA 82