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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961817
Clone id TST39A01NGRL0011_D05
Library
Length 697
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0011_D05. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GAGGCGCCCTGCTGGGCTCTTCCTGTGTGTGCGTGCAGCCTCTTCGATTCCTCGTAGGCC
ATCCCGCGATCGAAATCAATTGTCTGCACAACATGGCCCTGATATTCCAACTCTGAGCTC
TGCTCACCATCACCAGGTACCCTCCCCTTTCACTCTGCATCGCTACTTCTTTGGTGCTCT
CCAAAGATTATGTGCAATGGCTTCCCAAATGGCTTCCGCGGCCCTCAGGCCATCCTTTCT
CGTCTCGTCCATGTTTCGTCTCTGCTCTGCTTACACTGGCGAGATCTGCATCACGGAAAC
ATCGCATCAAGCTTGCCATTCGCAGATAGACGTTACATTGGACAGGAAACCTCACCATGC
TCGCCCTCCTCCATTTCCAGATCCCAACAAAGGATTCACCTCTCGACCCTTTTGTTCATC
GGGAGGCAGCAGATGCAAAGAGGCTTTCGTCAGAGCCTGGCATGATCTTCCCCCCACAGA
TCCTCAGCAGAGTGCCCCTAGGCCCGCAGATTTTGAGAAAAGGATTCCTACACTCCAGGA
TCTTCAAGCAAGAGGAAGATTAGGATTTTCGGATCTTGACGCACGCACCTTAGCCTCTCC
CAATAGGATCAAGGAGGAAAAGGTCCTCCCGCACCAGCAGTCTTTCAGTTCTGCACAGAA
GGTCTGTGAAGTCCTCTTCGACATCCTCTTCAACTTC
■■Homology search results ■■ -
sp_hit_id P13725
Definition sp|P13725|ONCM_HUMAN Oncostatin-M OS=Homo sapiens
Align length 35
Score (bit) 31.2
E-value 5.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961817|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0011_D05, 5'
         (697 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P13725|ONCM_HUMAN Oncostatin-M OS=Homo sapiens GN=OSM PE=1 SV=2     31   5.6  
sp|Q75NY9|SC16B_BOVIN Protein transport protein Sec16B OS=Bos ta...    31   7.2  
sp|Q9C0C2|TB182_HUMAN 182 kDa tankyrase 1-binding protein OS=Hom...    30   9.5  
sp|P25337|BUD31_YEAST Bud site selection protein 31 OS=Saccharom...    30   9.5  

>sp|P13725|ONCM_HUMAN Oncostatin-M OS=Homo sapiens GN=OSM PE=1 SV=2
          Length = 252

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +2

Query: 500 RPADFEKRIPTLQDLQARGRLGFSDLDARTLASPN 604
           R AD E+R+P  QDL+  G L   DL+   +A PN
Sbjct: 109 RLADLEQRLPKAQDLERSG-LNIEDLEKLQMARPN 142


>sp|Q75NY9|SC16B_BOVIN Protein transport protein Sec16B OS=Bos
           taurus GN=SEC16B PE=2 SV=1
          Length = 1052

 Score = 30.8 bits (68), Expect = 7.2
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +3

Query: 198 WLPKWLPRPSGHP 236
           W+P+WLP+PSG P
Sbjct: 4   WIPQWLPQPSGRP 16


>sp|Q9C0C2|TB182_HUMAN 182 kDa tankyrase 1-binding protein OS=Homo
            sapiens GN=TNKS1BP1 PE=1 SV=3
          Length = 1729

 Score = 30.4 bits (67), Expect = 9.5
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +2

Query: 404  RPFCSSGGSRCKEAFVRAWHDLPPTD---PQQSAPRPADFEKRIPTLQDLQARG 556
            R + S G SR  +A  R++   P +    P+++  +  +FEK+IP+++D    G
Sbjct: 959  RDYSSGGSSRTLDAQDRSFGTRPLSSGFSPEEAQQQDEEFEKKIPSVEDSLGEG 1012


>sp|P25337|BUD31_YEAST Bud site selection protein 31
           OS=Saccharomyces cerevisiae GN=BUD31 PE=1 SV=1
          Length = 157

 Score = 30.4 bits (67), Expect = 9.5
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 467 LPPTDPQQSAPRPADFEKRIPTLQDLQARGRLGFSDLDARTLASPN-RIKEEKVLPHQQS 643
           +P    ++S P P  FEK  PTL D + + R    D  ++  A  N ++ E   L HQ+S
Sbjct: 1   MPRIKTRRSKPAPDGFEKIKPTLTDFEIQLRDAQKDKSSKLAAKSNEQLWEIMQLHHQRS 60
tr_hit_id B6KCA2
Definition tr|B6KCA2|B6KCA2_TOXGO Putative uncharacterized protein OS=Toxoplasma gondii ME49
Align length 127
Score (bit) 34.7
E-value 6.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961817|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0011_D05, 5'
         (697 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6KCA2|B6KCA2_TOXGO Putative uncharacterized protein OS=Toxop...    35   6.0  

>tr|B6KCA2|B6KCA2_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_063360 PE=4 SV=1
          Length = 952

 Score = 34.7 bits (78), Expect = 6.0
 Identities = 40/127 (31%), Positives = 50/127 (39%), Gaps = 12/127 (9%)
 Frame = -1

Query: 502 PRGTLLRICG--GKIMPGSDESLFASAASR*TKGS--RGESFVGIWKWRRASMVRFPVQC 335
           P G  L   G  G I   S  SL  SA SR  +G   RG  F G    +R S    P + 
Sbjct: 572 PAGDWLAAAGQTGVISLWSVPSLCVSALSRRGRGEDKRGRKFAGSLTGKRDSERPLPQRD 631

Query: 334 NVYLRMASLMRCFRDADLASVSRAETKHGRDEKGWPEG--------RGSHLGSHCT*SLE 179
             +L M       +DAD   ++ AET H     G   G        RGSH G   T + E
Sbjct: 632 GAHLSM-------KDADKNEMTHAETVHLEKVDGTRRGRTFREMRSRGSHDGGRSTATDE 684

Query: 178 STKEVAM 158
           +    A+
Sbjct: 685 ACHSAAI 691