DK961715
Clone id TST39A01NGRL0010_O14
Library
Length 559
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_O14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
GCGGCCGCACAACTTTGTACAAGAAAGTTGGGTTTTTTTTTTTTTTTTTTTTGAAACAAG
GTATTTTTGCAGCCAATTTGCGAGTAATTAACAACATATTCATAGCGTATGGGGAATTTA
CAACTCTTGTACTCCCCAAGCAATGCGCTGCTGTCCATCTTTTGTGACAAAGTGGTACAA
ACCATTATTTGGGTAAGTGAGCATTGAATAGAGTAAAATAAAATGCAATGCTGAGCGTAA
TTTTACACGGGAAAACCTGCAAGCTACAGGACCCAGTCCTTGGGCCAAACTACAAAAATG
GAGGAAGCCAATCTCGCTTCCCAAGTACTACTACTCATCACTCCTAGCTCAAACTCCACC
CACTGCAGTGAAAATGGAGTTGATGTCATAATAAAAGAATGGTCACAATGCACCAGCTTT
CGACGCCTTCGCTTTTAGCTTGGACTTTTTTGTGTCCAAAGCTCCTAAACCTGTGCCCAG
ACCTAGAGGGGTCTGGCTGGATGTGCTTGATTCATTTGCTTTTCTCAGGCTTGGAGAGCA
TAGAGTCCAAGCCCGAATC
■■Homology search results ■■ -
sp_hit_id Q9K0N0
Definition sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein ubiB OS=Neisseria meningitidis serogroup B
Align length 49
Score (bit) 31.2
E-value 2.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961715|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_O14, 5'
(507 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein ub... 31 2.9
sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein ub... 31 2.9
sp|Q84TX2|SCRL1_ORYSJ SCAR-like protein 1 OS=Oryza sativa subsp.... 31 3.8

>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein ubiB
OS=Neisseria meningitidis serogroup B GN=ubiB PE=3 SV=1
Length = 503

Score = 31.2 bits (69), Expect = 2.9
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2

Query: 356 MHQLSTPSLLAWTFLCPKLLNLCPDLEGSGWMCLIHLLFSGLESIESKP 502
M L +++ TF +L LC L GSGW+C + + ++++P
Sbjct: 1 MKWLKRLTVIVGTFYRYRLAGLCASLMGSGWICALLKMMPQSSKLKNEP 49


>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein ubiB
OS=Neisseria meningitidis serogroup A GN=ubiB PE=3 SV=1
Length = 503

Score = 31.2 bits (69), Expect = 2.9
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2

Query: 356 MHQLSTPSLLAWTFLCPKLLNLCPDLEGSGWMCLIHLLFSGLESIESKP 502
M L +++ TF +L LC L GSGW+C + + ++++P
Sbjct: 1 MKWLKRLTVIVGTFYRYRLAGLCASLMGSGWICALLKMMPQSSKLKNEP 49


>sp|Q84TX2|SCRL1_ORYSJ SCAR-like protein 1 OS=Oryza sativa subsp.
japonica GN=Os03g0816900 PE=2 SV=2
Length = 2097

Score = 30.8 bits (68), Expect = 3.8
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +3

Query: 198 GKPASYRTQSLGQTTK-MEEANLASQVLLLITPSSNSTHCSENG 326
G+ +SY ++++ + K +++ N A + L IT SS S+H SENG
Sbjct: 1785 GEHSSYTSRAVSEDEKTVDDHNAACAMDLHITSSSASSHVSENG 1828


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961715|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_O14, 5'
(507 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******