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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961653
Clone id TST39A01NGRL0010_L17
Library
Length 454
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_L17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CAATTGCCCACCTGCTTGGAAAGGGGCACACAGGACCTTCCTCGGCCCACATGCCTAAGT
TACATCCTCCACTTTCTCTCCCGACTCTGCACATCGACCCTAGCCACCCCTTCCCCATTA
CAAATTTCACGCGCAGATTCCTTTTCAATCAATATTGCGAGTCCTTCCGCTTTGTCTGTT
CCTGAATGGGTATCATTTGGAGACCTCTTTCAAACTCAGATCTTTGCCCTACTATTCCCT
ATTTGGGAGCTTTAAAGGGGAACGAGCCACCGCTGTAGATGAAACCCAATTCCAGGGTTT
ATTTTTCTTTGCAGCCTTGCTATTGCGGGCAGCATCAGACTCAAGAGAAGGGCGATGTAA
TGCACCTGGTGCACGTTATGCTAGACAGTGCCCTGCGGGTTTTTGTTGTCAATGTTTTCT
CCGATGCTTTCAGTTATGTAGAACAGAGGTATTC
■■Homology search results ■■ -
sp_hit_id Q8NB54
Definition sp|Q8NB54|CR023_HUMAN Uncharacterized protein C18orf23 OS=Homo sapiens
Align length 62
Score (bit) 33.5
E-value 0.43
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961653|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_L17, 5'
         (454 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8NB54|CR023_HUMAN Uncharacterized protein C18orf23 OS=Homo s...    33   0.43 
sp|Q9SY69|PPR29_ARATH Pentatricopeptide repeat-containing protei...    31   2.2  
sp|Q9HCH0|K1602_HUMAN Uncharacterized protein KIAA1602 OS=Homo s...    31   2.8  
sp|P98160|PGBM_HUMAN Basement membrane-specific heparan sulfate ...    30   3.7  
sp|P02870|LEC_LENCU Lectin OS=Lens culinaris PE=1 SV=2                 30   6.4  
sp|Q8VXF2|LEC_LENCT Lectin OS=Lens culinaris subsp. tomentosus P...    30   6.4  
sp|Q93X49|LEC_LENCO Lectin OS=Lens culinaris subsp. orientalis P...    30   6.4  
sp|Q93WH6|LEC_LENCC Lectin OS=Lens culinaris subsp. culinaris PE...    30   6.4  
sp|P0C6A2|MAMD1_MOUSE Mastermind-like domain-containing protein ...    29   8.2  

>sp|Q8NB54|CR023_HUMAN Uncharacterized protein C18orf23 OS=Homo
           sapiens GN=C18orf23 PE=2 SV=1
          Length = 160

 Score = 33.5 bits (75), Expect = 0.43
 Identities = 22/62 (35%), Positives = 27/62 (43%)
 Frame = +3

Query: 66  PPLSLPTLHIDPSHPFPITNFTRRFLFNQYCESFRFVCS*MGIIWRPLSNSDLCPTIPYL 245
           PP S   LH  PSHPF        F+FN +C S    C        P   + LC T+ Y 
Sbjct: 4   PPPSRGHLHDFPSHPF--------FVFNPFCASPLCYCP-----AHPAPRNCLCMTVAYT 50

Query: 246 GA 251
           G+
Sbjct: 51  GS 52


>sp|Q9SY69|PPR29_ARATH Pentatricopeptide repeat-containing protein
           At1g10270 OS=Arabidopsis thaliana GN=GRP23 PE=2 SV=1
          Length = 913

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = +1

Query: 70  HFLSRLCTSTLATPSPLQISRADSFSINIASPSALSVPE 186
           H L RLCT+T  T SPL IS       NI+   A   PE
Sbjct: 5   HLLRRLCTTTTTTRSPLSISFLHQRIHNISLSPANEDPE 43


>sp|Q9HCH0|K1602_HUMAN Uncharacterized protein KIAA1602 OS=Homo
            sapiens GN=KIAA1602 PE=1 SV=2
          Length = 1330

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 24   GHTGPSSAHMPKLHPPLSLPTLHIDPSHPFPITNFTRR 137
            G +G  S ++PK  PP   P   + P+ P P+T   RR
Sbjct: 1131 GSSGTPSKNLPKTKPPRLDPPPGVPPARPPPLTKVPRR 1168


>sp|P98160|PGBM_HUMAN Basement membrane-specific heparan sulfate
           proteoglycan core protein OS=Homo sapiens GN=HSPG2 PE=1
           SV=3
          Length = 4391

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 66  PPLSLPTLHIDPS-HPFPITNFTRRFL 143
           PPLS   L IDPS H F + + +RRFL
Sbjct: 564 PPLSSTQLQIDPSLHEFQLVDLSRRFL 590


>sp|P02870|LEC_LENCU Lectin OS=Lens culinaris PE=1 SV=2
          Length = 275

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 79  SRLCTSTLATPSPLQISRADSFSINIASPSALSVPEWVSFG 201
           + + T TL  P+ L+     S+++N   P    VPEWV  G
Sbjct: 200 TNVLTVTLTYPNSLEEENVTSYTLNEVVPLKDVVPEWVRIG 240


>sp|Q8VXF2|LEC_LENCT Lectin OS=Lens culinaris subsp. tomentosus PE=3
           SV=2
          Length = 275

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 79  SRLCTSTLATPSPLQISRADSFSINIASPSALSVPEWVSFG 201
           + + T TL  P+ L+     S+++N   P    VPEWV  G
Sbjct: 200 TNVLTVTLTYPNSLEEENVTSYTLNEVVPLKDVVPEWVRIG 240


>sp|Q93X49|LEC_LENCO Lectin OS=Lens culinaris subsp. orientalis PE=3
           SV=2
          Length = 275

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 79  SRLCTSTLATPSPLQISRADSFSINIASPSALSVPEWVSFG 201
           + + T TL  P+ L+     S+++N   P    VPEWV  G
Sbjct: 200 TNVLTVTLTYPNSLEEENVTSYTLNEVVPLKDVVPEWVRIG 240


>sp|Q93WH6|LEC_LENCC Lectin OS=Lens culinaris subsp. culinaris PE=3
           SV=2
          Length = 275

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 79  SRLCTSTLATPSPLQISRADSFSINIASPSALSVPEWVSFG 201
           + + T TL  P+ L+     S+++N   P    VPEWV  G
Sbjct: 200 TNVLTVTLTYPNSLEEENVTSYTLNEVVPLKDVVPEWVRIG 240


>sp|P0C6A2|MAMD1_MOUSE Mastermind-like domain-containing protein 1
           OS=Mus musculus GN=Mamld1 PE=2 SV=1
          Length = 803

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
 Frame = +3

Query: 39  SSAHMPKLHPP-LSLPTLHIDPSHP----FPITNFTRRFLFNQYCESFRFVCS*MGII-- 197
           SS   P L PP L +P+ H  P  P    F   NFT   + +          S   ++  
Sbjct: 310 SSLPPPGLSPPYLPVPSPHPPPPQPPPPPFSPQNFTASCMSSSSLSGSAVQSSPNALLSS 369

Query: 198 WRPLSNSDLCPTIPYLGA 251
             P SN+ L PT+PY+ A
Sbjct: 370 MAPSSNASLGPTLPYVPA 387
tr_hit_id Q0CAB3
Definition tr|Q0CAB3|Q0CAB3_ASPTN Putative uncharacterized protein OS=Aspergillus terreus (strain NIH 2624)
Align length 76
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961653|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_L17, 5'
         (454 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0CAB3|Q0CAB3_ASPTN Putative uncharacterized protein OS=Asper...    35   1.9  
tr|Q5DFR3|Q5DFR3_SCHJA SJCHGC05071 protein OS=Schistosoma japoni...    34   3.2  
tr|Q00T62|Q00T62_OSTTA Putative hsp70 (ISS) OS=Ostreococcus taur...    33   9.3  

>tr|Q0CAB3|Q0CAB3_ASPTN Putative uncharacterized protein
           OS=Aspergillus terreus (strain NIH 2624) GN=ATEG_09371
           PE=4 SV=1
          Length = 1154

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +1

Query: 1   QLPTCLERGTQDLPRPTCLSYILHFLSRLCTSTLATPSPLQISRADSFSINIASPSALSV 180
           +LP  + + T+  P+ TCL  +     ++      +PS  + S A S+S++   PS LS 
Sbjct: 27  ELPELIRKVTKHAPQKTCLLEVASAEYQIAQHLQKSPSSARPSSAASYSVSELIPSLLST 86

Query: 181 PEWV--SFGDLFQTQI 222
            +    S  D+FQ QI
Sbjct: 87  IDKAEGSHQDVFQAQI 102


>tr|Q5DFR3|Q5DFR3_SCHJA SJCHGC05071 protein OS=Schistosoma japonicum
           PE=2 SV=1
          Length = 202

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 40  PRPTCLSYILHFLSRLCTSTLATPSPLQISRA 135
           P  TCLSY++H+L RL T    T +P Q+ ++
Sbjct: 111 PETTCLSYLIHYLRRLSTEDETTCNPNQLVKS 142


>tr|Q00T62|Q00T62_OSTTA Putative hsp70 (ISS) OS=Ostreococcus tauri
           GN=Ot17g02270 PE=3 SV=1
          Length = 651

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +1

Query: 79  SRLCTSTLATPSPLQISRADSFSINIASPSALSVPEWVSFGDLFQTQIFALLFPI 243
           S  CT  LA P         ++++ +A P    +  W++F DL +  +F   FP+
Sbjct: 586 SARCTKALAVPRRALTWAVRTWAVPVALPLDRRLKRWINFFDLLRNSLFDETFPV 640