DK961649
Clone id TST39A01NGRL0010_L11
Library
Length 243
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_L11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
TAGATGCTCTTTGGGCATTGCGCACGTCACCCAGTCCCCTCAGACCGTCTCCTTTGTTGG
AGCTAGCAGAGGCGCGGCTTCCAGGTATGGGGGCTCAGCTTGCGCGCAACAGGGAGGTTG
CCGAGGAGAAAAAGGAACTTGCACATTTGCTGAAAGCCGAGGGGGAAGAGTTTCCTGGAT
GCAGATTATGCTGCCTCGGATTTCAAAGAGTGGATGGACAAGCTACACCCTGAAAAGGTG
AAA
■■Homology search results ■■ -
sp_hit_id P61701
Definition sp|P61701|SYA_GEOSL Alanyl-tRNA synthetase OS=Geobacter sulfurreducens
Align length 29
Score (bit) 29.3
E-value 6.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961649|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_L11, 5'
(243 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P61701|SYA_GEOSL Alanyl-tRNA synthetase OS=Geobacter sulfurre... 29 6.4
sp|Q39Z77|SYA_GEOMG Alanyl-tRNA synthetase OS=Geobacter metallir... 29 6.4
sp|Q9HCB6|SPON1_HUMAN Spondin-1 OS=Homo sapiens GN=SPON1 PE=1 SV=2 29 6.4

>sp|P61701|SYA_GEOSL Alanyl-tRNA synthetase OS=Geobacter
sulfurreducens GN=alaS PE=3 SV=1
Length = 875

Score = 29.3 bits (64), Expect = 6.4
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +3

Query: 78 LPGMGAQLARNREVAEEKKELAHLLKAEG 164
L GMGA L +++ +E+KE+A L+KAEG
Sbjct: 701 LTGMGA-LRHVQQLEDERKEIAALIKAEG 728


>sp|Q39Z77|SYA_GEOMG Alanyl-tRNA synthetase OS=Geobacter
metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
GN=alaS PE=3 SV=1
Length = 876

Score = 29.3 bits (64), Expect = 6.4
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +3

Query: 78 LPGMGAQLARNREVAEEKKELAHLLKAEG 164
L GMGA L +E+ +EK+++A L+KAEG
Sbjct: 702 LTGMGA-LRHIQELEDEKRQIAALMKAEG 729


>sp|Q9HCB6|SPON1_HUMAN Spondin-1 OS=Homo sapiens GN=SPON1 PE=1 SV=2
Length = 807

Score = 29.3 bits (64), Expect = 6.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3

Query: 96 QLARNREVAEEKKELAHLLKAEGEEFPGCRL 188
Q R RE E ++ ++EGE+FPGCR+
Sbjct: 727 QKLRWREARESRRSEQLKEESEGEQFPGCRM 757


tr_hit_id A9P0A2
Definition tr|A9P0A2|A9P0A2_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 31
Score (bit) 37.4
E-value 0.37
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961649|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_L11, 5'
(243 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9P0A2|A9P0A2_PICSI Putative uncharacterized protein OS=Picea... 37 0.37
tr|A9S723|A9S723_PHYPA Predicted protein OS=Physcomitrella paten... 35 1.8
tr|A7P887|A7P887_VITVI Chromosome chr3 scaffold_8, whole genome ... 28 2.5
tr|Q9SZP6|Q9SZP6_ARATH Putative uncharacterized protein F20M13.2... 33 9.1

>tr|A9P0A2|A9P0A2_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 318

Score = 37.4 bits (85), Expect = 0.37
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +3

Query: 87 MGAQLARNREVAEEKKELAHLLKAEGEEFPG 179
MG Q+++ ++V +EKK+L L + EG EFPG
Sbjct: 1 MGGQISKQKQVWQEKKKLEELQRTEGAEFPG 31


>tr|A9S723|A9S723_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_163191 PE=4 SV=1
Length = 335

Score = 35.0 bits (79), Expect = 1.8
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3

Query: 87 MGAQLARNREVAEEKKELAHLLKAEGEEFPGC 182
MGAQ++R +V EK +L +L ++ G FPGC
Sbjct: 1 MGAQISRQIQVVIEKHQLRNLEESRGTSFPGC 32


>tr|A7P887|A7P887_VITVI Chromosome chr3 scaffold_8, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00036087001
PE=4 SV=1
Length = 318

Score = 27.7 bits (60), Expect(2) = 2.5
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1

Query: 163 GKSFLDADYAASDFKEWMDKLHPEKV 240
G F +DY D K WM L PEKV
Sbjct: 30 GDVFPGSDYHPPDRKNWMSGLGPEKV 55



Score = 26.9 bits (58), Expect(2) = 2.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3

Query: 96 QLARNREVAEEKKELAHLLKAEGEEFPG 179
QLAR + ++ +KK L L + G+ FPG
Sbjct: 8 QLARRKALSTQKKTLCELNQTCGDVFPG 35


>tr|Q9SZP6|Q9SZP6_ARATH Putative uncharacterized protein F20M13.250
(AT4g38690/F20M13_250) (Putative uncharacterized protein
AT4g38690) OS=Arabidopsis thaliana GN=F20M13.250 PE=2
SV=1
Length = 318

Score = 32.7 bits (73), Expect = 9.1
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3

Query: 87 MGAQLARNREVAEEKKELAHLLKAEGEEFPGC 182
+ QL R + ++ EKK L L K+ G EFPGC
Sbjct: 5 LSKQLERRKAISTEKKALTDLEKSCGCEFPGC 36