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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961630
Clone id TST39A01NGRL0010_K15
Library
Length 255
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_K15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
ATGATAATTGACGCTTTCCTGGAGCTGGCAAGTCTGCTCGTGCTCTTAATCATACATTGC
TTTCCTCCAGGCCTTCAACCACACCTCCACTTACCTTCAATGCTTGGCAAACATGTGCTC
TTCAATGGTGGCTCCAGCGGCATCAAGTCTGTCTCTTGCCCATCAATGGCTCCGCCCAGG
AATCTATCTCACTCACATATCTCCTTACGGCGACCGCCTCTCTGAATCTGCCCAATATCT
CTTCCACAGCTACCT
■■Homology search results ■■ -
sp_hit_id Q7MH94
Definition sp|Q7MH94|ALR_VIBVY Alanine racemase OS=Vibrio vulnificus (strain YJ016)
Align length 50
Score (bit) 32.0
E-value 0.97
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961630|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_K15, 5'
         (255 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7MH94|ALR_VIBVY Alanine racemase OS=Vibrio vulnificus (strai...    32   0.97 
sp|Q8DCL0|ALR1_VIBVU Alanine racemase 1 OS=Vibrio vulnificus GN=...    32   0.97 
sp|Q2NTA8|ALR_SODGM Alanine racemase OS=Sodalis glossinidius (st...    31   1.7  
sp|B0USP1|TRUA_HAES2 tRNA pseudouridine synthase A OS=Haemophilu...    31   2.2  
sp|Q6T3U3|NPCL1_RAT Niemann-Pick C1-like protein 1 OS=Rattus nor...    31   2.2  
sp|Q2NKK8|CK047_HUMAN Uncharacterized protein C11orf47 OS=Homo s...    31   2.2  
sp|Q6T3U4|NPCL1_MOUSE Niemann-Pick C1-like protein 1 OS=Mus musc...    30   3.7  
sp|Q641X6|MORN1_RAT MORN repeat-containing protein 1 OS=Rattus n...    30   3.7  
sp|Q87L78|ALR1_VIBPA Alanine racemase 1 OS=Vibrio parahaemolytic...    30   4.8  

>sp|Q7MH94|ALR_VIBVY Alanine racemase OS=Vibrio vulnificus (strain
           YJ016) GN=alr PE=3 SV=1
          Length = 372

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +2

Query: 104 LANMCSSMVAPAASSLSLAHQ-----WLRPGIYLTHISPYGDRLSESAQY 238
           L   C    + AAS+  LA Q     W+RPGI +  +SP+GD+ +    Y
Sbjct: 195 LTRGCKGERSLAASAGLLAWQESQLEWVRPGIIMYGVSPFGDKTASELGY 244


>sp|Q8DCL0|ALR1_VIBVU Alanine racemase 1 OS=Vibrio vulnificus
           GN=alr1 PE=3 SV=2
          Length = 358

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +2

Query: 104 LANMCSSMVAPAASSLSLAHQ-----WLRPGIYLTHISPYGDRLSESAQY 238
           L   C    + AAS+  LA Q     W+RPGI +  +SP+GD+ +    Y
Sbjct: 181 LTRGCKGERSLAASAGLLAWQESQLEWVRPGIIMYGVSPFGDKTASELGY 230


>sp|Q2NTA8|ALR_SODGM Alanine racemase OS=Sodalis glossinidius
           (strain morsitans) GN=alr PE=3 SV=1
          Length = 356

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 98  QCLANMCSSMVAPAASSLSLAHQWLRPGIYLTHISPYGD 214
           +CLAN  +++  PA        QW+RPGI L   SP G+
Sbjct: 187 RCLANSAATLWHPATHG-----QWVRPGIILYGASPSGN 220


>sp|B0USP1|TRUA_HAES2 tRNA pseudouridine synthase A OS=Haemophilus
           somnus (strain 2336) GN=truA PE=3 SV=1
          Length = 269

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = +1

Query: 61  FPPGLQPHL-----HLPSMLGKHVLFNGGSSGIKSVSCPSMAPPRNLSHSHI 201
           FP G+  H      HL    G+++L     S  ++  C S  P RN+ H H+
Sbjct: 123 FPTGVTHHHVALDHHLMHQAGQYLLGEHDFSSFRAAQCQSNTPWRNIHHLHV 174


>sp|Q6T3U3|NPCL1_RAT Niemann-Pick C1-like protein 1 OS=Rattus
           norvegicus GN=Npc1l1 PE=1 SV=1
          Length = 1331

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +1

Query: 106 GKHVLFNGGSSGIKSVSCPSMAPPRNLSHSHISLRRPPL*ICP 234
           GK+   +GG + + +VSC S  P R+++  H++L +    ICP
Sbjct: 39  GKNPELSGGLTSLSNVSCLSNTPARHVTGEHLALLQR---ICP 78


>sp|Q2NKK8|CK047_HUMAN Uncharacterized protein C11orf47 OS=Homo
           sapiens GN=C11orf47 PE=2 SV=1
          Length = 597

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 52  IHCFPPGLQPHLHLPSMLGKHV-LFNGGSSGIKSVSCPSMAPPRNLSHSHISLRRPPL*I 228
           ++C+ P +Q HLHL  +LG  V  F   SS + S S     P +   H      RPP   
Sbjct: 111 LYCWAPWVQTHLHL-DLLGAIVQAFPPDSSLLDSASHADCCPQKRRLH-----HRPPCPA 164

Query: 229 CP 234
           CP
Sbjct: 165 CP 166


>sp|Q6T3U4|NPCL1_MOUSE Niemann-Pick C1-like protein 1 OS=Mus
           musculus GN=Npc1l1 PE=2 SV=1
          Length = 1333

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +1

Query: 106 GKHVLFNGGSSGIKSVSCPSMAPPRNLSHSHISLRRPPL*ICP 234
           GK+   +GG + + ++SC S  P R+++  H++L +    +CP
Sbjct: 39  GKNPELSGGLTSLSNISCLSNTPARHVTGDHLALLQR---VCP 78


>sp|Q641X6|MORN1_RAT MORN repeat-containing protein 1 OS=Rattus
           norvegicus GN=Morn1 PE=2 SV=1
          Length = 483

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +1

Query: 64  PPGLQPHLHLPSMLGK 111
           PPG+QP+L LPSML K
Sbjct: 378 PPGMQPYLFLPSMLEK 393


>sp|Q87L78|ALR1_VIBPA Alanine racemase 1 OS=Vibrio parahaemolyticus
           GN=alr1 PE=3 SV=1
          Length = 358

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = +2

Query: 104 LANMCSSMVAPAASSLSLAH-----QWLRPGIYLTHISPYGDRLSESAQY 238
           L + C    + AAS+  LA      +W+RPGI +  +SP+ D+ ++   Y
Sbjct: 181 LTSGCQGERSLAASAGLLAWPQSQLEWVRPGIIMYGVSPFSDKTAQDLGY 230
tr_hit_id Q7UDZ8
Definition tr|Q7UDZ8|Q7UDZ8_RHOBA Putative uncharacterized protein OS=Rhodopirellula baltica
Align length 44
Score (bit) 36.2
E-value 0.85
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961630|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_K15, 5'
         (255 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7UDZ8|Q7UDZ8_RHOBA Putative uncharacterized protein OS=Rhodo...    36   0.85 
tr|Q0ZQM0|Q0ZQM0_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|Q0ZQL9|Q0ZQL9_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|Q0GH72|Q0GH72_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|Q0GA17|Q0GA17_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|Q078N6|Q078N6_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|Q076B4|Q076B4_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|B8Y8E4|B8Y8E4_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|B8Y8E3|B8Y8E3_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|B8Y8E2|B8Y8E2_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|B8Y8E1|B8Y8E1_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|B8Y8E0|B8Y8E0_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|B8Y8D9|B8Y8D9_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|B7U5S4|B7U5S4_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|B5B303|B5B303_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|B3VK81|B3VK81_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|B0ZS85|B0ZS85_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|B0ZS84|B0ZS84_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|B0ZS83|B0ZS83_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|B0ZS82|B0ZS82_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|B0ZS81|B0ZS81_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|B0YIS3|B0YIS3_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|B0YIS2|B0YIS2_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|A9LY64|A9LY64_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|A6XIG3|A6XIG3_9PICO Polyprotein OS=Duck hepatitis virus DHV-H...    35   2.5  
tr|A6XIG1|A6XIG1_9PICO Polyprotein OS=Duck hepatitis virus DHV-H...    35   2.5  
tr|A5HU62|A5HU62_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|A4KYM3|A4KYM3_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|A3RIZ6|A3RIZ6_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  
tr|A3FK56|A3FK56_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=...    35   2.5  

>tr|Q7UDZ8|Q7UDZ8_RHOBA Putative uncharacterized protein
           OS=Rhodopirellula baltica GN=RB11676 PE=4 SV=1
          Length = 188

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 24  AGKSARALNHTLLSS--RPSTTPPLTFNAWQTCALQWWLQRHQV 149
           A K  R++N T+L S  R S  PP+ F+    C + WWL R +V
Sbjct: 13  ASKRNRSINSTILRSPRRRSRVPPILFSGLWLCVVTWWLIRVRV 56


>tr|Q0ZQM0|Q0ZQM0_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=4
            SV=1
          Length = 2249

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 30   KSARALNHTLLSSRPSTTPPLTFNAWQTCA--LQWWLQ 137
            K+    N  L      TT P +FN W TCA  +QWWL+
Sbjct: 1143 KTIPKFNDMLEDQSGKTTSPKSFNDWTTCAKNVQWWLE 1180


>tr|Q0ZQL9|Q0ZQL9_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=4
            SV=1
          Length = 2249

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 30   KSARALNHTLLSSRPSTTPPLTFNAWQTCA--LQWWLQ 137
            K+    N  L      TT P +FN W TCA  +QWWL+
Sbjct: 1143 KTIPKFNDMLEDQSGKTTSPKSFNDWTTCAKNVQWWLE 1180


>tr|Q0GH72|Q0GH72_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=4
            SV=2
          Length = 2249

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 30   KSARALNHTLLSSRPSTTPPLTFNAWQTCA--LQWWLQ 137
            K+    N  L      TT P +FN W TCA  +QWWL+
Sbjct: 1143 KTIPKFNDMLEDQSGKTTSPKSFNDWTTCAKNVQWWLE 1180


>tr|Q0GA17|Q0GA17_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=4
            SV=2
          Length = 2249

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 30   KSARALNHTLLSSRPSTTPPLTFNAWQTCA--LQWWLQ 137
            K+    N  L      TT P +FN W TCA  +QWWL+
Sbjct: 1143 KTIPKFNDMLEDQSGKTTSPKSFNDWTTCAKNVQWWLE 1180


>tr|Q078N6|Q078N6_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=4
            SV=1
          Length = 2249

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 30   KSARALNHTLLSSRPSTTPPLTFNAWQTCA--LQWWLQ 137
            K+    N  L      TT P +FN W TCA  +QWWL+
Sbjct: 1143 KTIPKFNDMLEDQSGKTTSPKSFNDWTTCAKNVQWWLE 1180


>tr|Q076B4|Q076B4_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=4
            SV=1
          Length = 2249

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 30   KSARALNHTLLSSRPSTTPPLTFNAWQTCA--LQWWLQ 137
            K+    N  L      TT P +FN W TCA  +QWWL+
Sbjct: 1143 KTIPKFNDMLEDQSGKTTSPKSFNDWTTCAKNVQWWLE 1180


>tr|B8Y8E4|B8Y8E4_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=4
            SV=1
          Length = 2249

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 30   KSARALNHTLLSSRPSTTPPLTFNAWQTCA--LQWWLQ 137
            K+    N  L      TT P +FN W TCA  +QWWL+
Sbjct: 1143 KTIPRFNDMLEDQSGKTTSPKSFNDWTTCAKNVQWWLE 1180


>tr|B8Y8E3|B8Y8E3_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=4
            SV=1
          Length = 2249

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 30   KSARALNHTLLSSRPSTTPPLTFNAWQTCA--LQWWLQ 137
            K+    N  L      TT P +FN W TCA  +QWWL+
Sbjct: 1143 KTIPRFNDMLEDQSGKTTSPKSFNDWTTCAKNVQWWLE 1180


>tr|B8Y8E2|B8Y8E2_9PICO Polyprotein OS=Duck hepatitis virus 1 PE=4
            SV=1
          Length = 2249

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 30   KSARALNHTLLSSRPSTTPPLTFNAWQTCA--LQWWLQ 137
            K+    N  L      TT P +FN W TCA  +QWWL+
Sbjct: 1143 KTIPKFNDMLEDQSGKTTSPKSFNDWTTCAKNVQWWLE 1180