DK961515 |
Clone id |
TST39A01NGRL0010_F11 |
Library |
TST39 |
Length |
709 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_F11. 5' end sequence. |
Accession |
DK961515 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL4013Contig1 |
Sequence |
GGCCGATCCCTGGGAGGGCAGGGTGCAAGACGCTCAGCTCGAGAGACGGGAAAGGACGAA GGTGCTCGGACAGTTCAAGAGATGACGAGGCTGTAGTTCTCTATCCTAAGTCATCGCCTA CACAGGGCGGAGGCCAGAATGTGCTTTTGCAGAGGCTATTCAATTGACAGCTACTAGAGA CAAAGAGATGAATACTCAACTGTCAACTCCCGGAAGTTCTACCCCTCCCACAACTGCTGT GGGCACTGACAACCTGACAAGTCAGATCGCTGGCATGTCCAAGCATCAACTGTATCAGAT TGTCTCTCAAATGAAGGATCTGATTCAACAGAATCAACAGCAAGCTCGCCAAATACTTAT TGCAAATCCTCAACTAACTAAGACACTCTTTCAGGCTCAGATTATGCTCGGAATGGTTAG GGCTCCAGATACTCTGCCACCTGTACAGCCAGGGGTAACAATGGCAACAGCACAACCTTC GCAACAGTCCTCATCCCAGACTCCGACCCTTCAAGTACCAGCTACACCTTCATCGCAGTC TGGAAGTACATTTCAGCCTCTTTCGAGTCCACTGCCAGCTTCTCAACAGCCTCCACCGCA GATGGCATCCCCATACCTCCNACAATCGCAAGCGGCAAGTGTATCGTCGCAGTCAAATCA GCCTTCCTTTGCGTTTCAACAATCTGTGCAGACACCTTCTCATTCATCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9C105 |
Definition |
sp|Q9C105|YKT4_SCHPO Chitinase-like protein PB1E7.04c OS=Schizosaccharomyces pombe |
Align length |
82 |
Score (bit) |
34.7 |
E-value |
0.52 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961515|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0010_F11, 5' (709 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9C105|YKT4_SCHPO Chitinase-like protein PB1E7.04c OS=Schizos... 35 0.52 sp|Q5SSG8|MUC21_HUMAN Mucin-21 OS=Homo sapiens GN=MUC21 PE=1 SV=1 34 0.68 sp|Q3E7X8|YE077_YEAST Y' element ATP-dependent helicase YEL077C ... 33 1.2 sp|P40889|YJW5_YEAST Y' element ATP-dependent helicase YJL225C O... 32 2.6 sp|P40434|YIR7_YEAST Y' element ATP-dependent helicase YIL177C O... 32 2.6 sp|Q8MQJ9|BRAT_DROME Brain tumor protein OS=Drosophila melanogas... 32 2.6 sp|P87498|VIT1_CHICK Vitellogenin-1 OS=Gallus gallus GN=VTG1 PE=... 32 4.4 sp|P47033|PRY3_YEAST Protein PRY3 OS=Saccharomyces cerevisiae GN... 32 4.4 sp|Q63259|PTPRN_RAT Receptor-type tyrosine-protein phosphatase-l... 31 5.7 sp|Q4ZNA1|THIE_PSEU2 Thiamine-phosphate pyrophosphorylase OS=Pse... 31 7.5 sp|Q87VY6|THIE_PSESM Thiamine-phosphate pyrophosphorylase OS=Pse... 31 7.5 sp|Q48DP2|THIE_PSE14 Thiamine-phosphate pyrophosphorylase OS=Pse... 31 7.5 sp|P53819|YRF16_YEAST Y' element ATP-dependent helicase protein ... 31 7.6 sp|P53345|YRF13_YEAST Y' element ATP-dependent helicase protein ... 31 7.6 sp|P40105|YRF12_YEAST Y' element ATP-dependent helicase protein ... 31 7.6 sp|Q08995|YP204_YEAST Y' element ATP-dependent helicase YPR204W ... 31 7.6 sp|Q03099|YMN3_YEAST Y' element ATP-dependent helicase YML133C O... 31 7.6 sp|Q07888|YL067_YEAST Y' element ATP-dependent helicase YLL067C ... 31 7.6 sp|Q99208|YL066_YEAST Y' element ATP-dependent helicase YLL066C ... 31 7.6 sp|P54867|SLG1_YEAST Protein SLG1 OS=Saccharomyces cerevisiae GN... 31 7.6 sp|Q8T2I5|LYSG3_DICDI Probable GH family 25 lysozyme 3 OS=Dictyo... 31 7.6 sp|Q54S40|GBPD_DICDI Cyclic GMP-binding protein D OS=Dictyosteli... 30 9.9
>sp|Q9C105|YKT4_SCHPO Chitinase-like protein PB1E7.04c OS=Schizosaccharomyces pombe GN=SPAPB1E7.04c PE=2 SV=1 Length = 1236
Score = 34.7 bits (78), Expect = 0.52 Identities = 27/82 (32%), Positives = 37/82 (45%) Frame = +1
Query: 283 ASTVSDCLSNEGSDSTESTASSPNTYCKSSTN*DTLSGSDYARNG*GSRYSATCTARGNN 462 A + S + + ST TASS NT S T+ + S N + SAT +++ Sbjct: 725 AMSSSSAIPTSVNSSTLITASSSNTLLSSITSSSAIVSSTTVSNISSNLPSATASSQSQL 784
Query: 463 GNSTTFATVLIPDSDPSSTSYT 528 NS+T AT L S S T T Sbjct: 785 TNSSTLATSLYLSSSSSRTIST 806
>sp|Q5SSG8|MUC21_HUMAN Mucin-21 OS=Homo sapiens GN=MUC21 PE=1 SV=1 Length = 566
Score = 34.3 bits (77), Expect = 0.68 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Frame = +1
Query: 277 VQASTVSDCLSNEGSDSTESTASSPNTYCKSSTN*D---TLSGSDYARNG*GSRYSATCT 447 + ++ S S+ S +T S +S+P++ ++TN D T SG+ A N S S+ + Sbjct: 104 IATNSESSTTSSGASTATNSESSTPSSGASTATNSDSSTTSSGASTATNSDSSTTSSEAS 163
Query: 448 ARGNNGNSTTFATVLIPDSDPSST 519 N+ +STT + + SST Sbjct: 164 TATNSESSTTSSGASTATNSESST 187
Score = 33.5 bits (75), Expect = 1.2 Identities = 23/78 (29%), Positives = 38/78 (48%) Frame = +1
Query: 286 STVSDCLSNEGSDSTESTASSPNTYCKSSTN*DTLSGSDYARNG*GSRYSATCTARGNNG 465 S+ + +N ++S ST SS + +S + T SG+ A N S S+ + N+G Sbjct: 305 SSTTSSGANTATNSDSSTTSSGASTATNSESSTTSSGASTATNSESSTTSSGASTATNSG 364
Query: 466 NSTTFATVLIPDSDPSST 519 +STT + + SST Sbjct: 365 SSTTSSGTSTATNSESST 382
Score = 32.3 bits (72), Expect = 2.6 Identities = 23/81 (28%), Positives = 41/81 (50%) Frame = +1
Query: 280 QASTVSDCLSNEGSDSTESTASSPNTYCKSSTN*DTLSGSDYARNG*GSRYSATCTARGN 459 ++STVS +S + + + +S NT S ++ T SG++ A N S S+ + N Sbjct: 274 ESSTVSSGISTVTNSESSTPSSGANTATNSESS-TTSSGANTATNSDSSTTSSGASTATN 332
Query: 460 NGNSTTFATVLIPDSDPSSTS 522 + +STT + + SST+ Sbjct: 333 SESSTTSSGASTATNSESSTT 353
>sp|Q3E7X8|YE077_YEAST Y' element ATP-dependent helicase YEL077C OS=Saccharomyces cerevisiae GN=YEL077C PE=2 SV=1 Length = 1277
Score = 33.5 bits (75), Expect = 1.2 Identities = 30/93 (32%), Positives = 43/93 (46%) Frame = +1
Query: 259 KSDRWHVQASTVSDCLSNEGSDSTESTASSPNTYCKSSTN*DTLSGSDYARNG*GSRYSA 438 KS A+ SN + +TEST S + +STN +T + + + N S+ SA Sbjct: 777 KSINSSTNATITESTNSNTNATTTESTNSKTSATTTASTNSNTSATTTESTN---SKTSA 833
Query: 439 TCTARGNNGNSTTFATVLIPDSDPSSTSYTFIA 537 T TA N+ S T +S S+TS T A Sbjct: 834 TTTASTNSNTSAT-----TTESTNSNTSATTTA 861
Score = 32.3 bits (72), Expect = 2.6 Identities = 22/65 (33%), Positives = 34/65 (52%) Frame = +1
Query: 283 ASTVSDCLSNEGSDSTESTASSPNTYCKSSTN*DTLSGSDYARNG*GSRYSATCTARGNN 462 A+T + SN + +TEST S + +STN +T + + + N S SAT TA N+ Sbjct: 809 ATTTASTNSNTSATTTESTNSKTSATTTASTNSNTSATTTESTN---SNTSATTTASTNS 865
Query: 463 GNSTT 477 + T Sbjct: 866 STNAT 870
>sp|P40889|YJW5_YEAST Y' element ATP-dependent helicase YJL225C OS=Saccharomyces cerevisiae GN=YJL225C PE=2 SV=2 Length = 1758
Score = 32.3 bits (72), Expect = 2.6 Identities = 25/73 (34%), Positives = 32/73 (43%) Frame = +1
Query: 259 KSDRWHVQASTVSDCLSNEGSDSTESTASSPNTYCKSSTN*DTLSGSDYARNG*GSRYSA 438 KS A+T SN + +TEST SS N STN T + + + N S SA Sbjct: 1283 KSINSSTNATTTESTNSNTNATTTESTNSSTNATTTESTNSSTNATTTESTN---SNTSA 1339
Query: 439 TCTARGNNGNSTT 477 T N+ S T Sbjct: 1340 ATTESTNSNTSAT 1352
Score = 32.0 bits (71), Expect = 3.4 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Frame = +1
Query: 283 ASTVSDCLSNEGSDSTESTASSPNTYCKSSTN*DTLSGSDYARNG*GSRYSATCTARGNN 462 A+T S+ + +TEST SS N STN +T + + + N R SAT T N+ Sbjct: 1207 ATTTESTNSSTNATTTESTNSSTNATTTESTNSNTSATTTASIN---VRTSATTTESTNS 1263
Query: 463 GNS-TTFATVLIPDSDPSSTS 522 S TT A++ + S ++ S Sbjct: 1264 STSATTTASINVRTSATTTKS 1284
Score = 30.4 bits (67), Expect = 9.9 Identities = 30/85 (35%), Positives = 38/85 (44%) Frame = +1
Query: 283 ASTVSDCLSNEGSDSTESTASSPNTYCKSSTN*DTLSGSDYARNG*GSRYSATCTARGNN 462 A+T + + +TEST SS N STN T + + + N S SAT TA N Sbjct: 1195 ATTTASINVRTSATTTESTNSSTNATTTESTNSSTNATTTESTN---SNTSATTTASINV 1251
Query: 463 GNSTTFATVLIPDSDPSSTSYTFIA 537 S T +S SSTS T A Sbjct: 1252 RTSAT-----TTESTNSSTSATTTA 1271
>sp|P40434|YIR7_YEAST Y' element ATP-dependent helicase YIL177C OS=Saccharomyces cerevisiae GN=YIL177C PE=2 SV=1 Length = 1758
Score = 32.3 bits (72), Expect = 2.6 Identities = 25/73 (34%), Positives = 32/73 (43%) Frame = +1
Query: 259 KSDRWHVQASTVSDCLSNEGSDSTESTASSPNTYCKSSTN*DTLSGSDYARNG*GSRYSA 438 KS A+T SN + +TEST SS N STN T + + + N S SA Sbjct: 1283 KSINSSTNATTTESTNSNTNATTTESTNSSTNATTTESTNSSTNATTTESTN---SNTSA 1339
Query: 439 TCTARGNNGNSTT 477 T N+ S T Sbjct: 1340 ATTESTNSNTSAT 1352
Score = 32.0 bits (71), Expect = 3.4 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Frame = +1
Query: 283 ASTVSDCLSNEGSDSTESTASSPNTYCKSSTN*DTLSGSDYARNG*GSRYSATCTARGNN 462 A+T S+ + +TEST SS N STN +T + + + N R SAT T N+ Sbjct: 1207 ATTTESTNSSTNATTTESTNSSTNATTTESTNSNTSATTTASIN---VRTSATTTESTNS 1263
Query: 463 GNS-TTFATVLIPDSDPSSTS 522 S TT A++ + S ++ S Sbjct: 1264 STSATTTASINVRTSATTTKS 1284
Score = 30.4 bits (67), Expect = 9.9 Identities = 30/85 (35%), Positives = 38/85 (44%) Frame = +1
Query: 283 ASTVSDCLSNEGSDSTESTASSPNTYCKSSTN*DTLSGSDYARNG*GSRYSATCTARGNN 462 A+T + + +TEST SS N STN T + + + N S SAT TA N Sbjct: 1195 ATTTASINVRTSATTTESTNSSTNATTTESTNSSTNATTTESTN---SNTSATTTASINV 1251
Query: 463 GNSTTFATVLIPDSDPSSTSYTFIA 537 S T +S SSTS T A Sbjct: 1252 RTSAT-----TTESTNSSTSATTTA 1271
>sp|Q8MQJ9|BRAT_DROME Brain tumor protein OS=Drosophila melanogaster GN=brat PE=1 SV=2 Length = 1037
Score = 32.3 bits (72), Expect = 2.6 Identities = 42/174 (24%), Positives = 68/174 (39%), Gaps = 5/174 (2%) Frame = +1
Query: 187 DEY---STVNSRKFYPSHNCCGH*QPDKSDRWHVQASTVSDCLSNEGSDSTESTASSPNT 357 DEY S+V SR N GH P + +++ S C S+ S S+ S++SS + Sbjct: 50 DEYTGGSSVKSRSEVTVIN--GH-HPISASVSSSSSASSSSCSSSSSSSSSSSSSSSSTS 106
Query: 358 YCKS--STN*DTLSGSDYARNG*GSRYSATCTARGNNGNSTTFATVLIPDSDPSSTSYTF 531 ST+ +S ++ A + + + N GNS + V+ +S+S + Sbjct: 107 GLSGCGSTSSSVISANNVASSNGPGVIGSNLQSSNNGGNSGISSLVVGAGKGSNSSSNSS 166
Query: 532 IAVWKYIXXXXXXXXXXXXXXXXDGIPIPPTIASGKCIVAVKSAFLCVSTICAD 693 + +G P T KC AV F C S +CA+ Sbjct: 167 SS-----------------NTSANGSPPRCTACKSKCSDAVAKCFECQSYLCAN 203
>sp|P87498|VIT1_CHICK Vitellogenin-1 OS=Gallus gallus GN=VTG1 PE=1 SV=1 Length = 1912
Score = 31.6 bits (70), Expect = 4.4 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%) Frame = +1
Query: 184 RDEYSTVNSRKFYPSHNCCGH*QPDKSDRWHVQASTVSDCLSNEGSDSTESTASSPNTYC 363 + S N +KFYP D S +S+ S S++ S S+ S++SS ++ Sbjct: 1133 KSRQSKANEKKFYPF--------GDSSSSGSSSSSSSSSSSSSDSSSSSRSSSSSDSSSS 1184
Query: 364 KSSTN*DTLSGS-DYARNG*GSRYSATCTARGNNGNST 474 SS++ + S S +R+ +R S++ ++ ++ +S+ Sbjct: 1185 SSSSSSSSSSKSKSSSRSSKSNRSSSSSNSKDSSSSSS 1222
>sp|P47033|PRY3_YEAST Protein PRY3 OS=Saccharomyces cerevisiae GN=PRY3 PE=2 SV=1 Length = 881
Score = 31.6 bits (70), Expect = 4.4 Identities = 24/90 (26%), Positives = 40/90 (44%) Frame = +1
Query: 253 PDKSDRWHVQASTVSDCLSNEGSDSTESTASSPNTYCKSSTN*DTLSGSDYARNG*GSRY 432 P K+ +STV + ST S+ASS + +T+ T+ SD + + Sbjct: 217 PAKTATLTASSSTVITSSTESVGSSTVSSASSSSVTTSYATSSSTVVSSDATSS--TTTT 274
Query: 433 SATCTARGNNGNSTTFATVLIPDSDPSSTS 522 S+ T+ + T +T SDP+S+S Sbjct: 275 SSVATSSSTTSSDPTSSTAAASSSDPASSS 304
>sp|Q63259|PTPRN_RAT Receptor-type tyrosine-protein phosphatase-like N OS=Rattus norvegicus GN=Ptprn PE=1 SV=2 Length = 983
Score = 31.2 bits (69), Expect = 5.7 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = +3
Query: 3 PIPGRAGCKTLSSRDGKGRRCSDSSRDDEAVVL--YPKSSPTQGGGQNVLLQRL 158 P+PGRA L +G R DSS E VL + + SP Q +V LQRL Sbjct: 289 PVPGRARAPRL-PEEGGSSRAEDSSEGHEEEVLGGHGEKSPPQAVQADVSLQRL 341
>sp|Q4ZNA1|THIE_PSEU2 Thiamine-phosphate pyrophosphorylase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=thiE PE=3 SV=1 Length = 205
Score = 30.8 bits (68), Expect = 7.5 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = -3
Query: 698 KVSAQIVETQRKADLTATIHLPLAIVGGMGMPSAVEAVE 582 K A V A + A +HLP+A++GG+ + +A + VE Sbjct: 135 KPGAPAVPLDLIAQVRARVHLPIAVIGGITLENAPQLVE 173
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NXV2 |
Definition |
tr|A9NXV2|A9NXV2_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
71 |
Score (bit) |
66.2 |
E-value |
2.0e-09 |
Report |
|