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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961455
Clone id TST39A01NGRL0010_C20
Library
Length 642
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_C20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GTTCAAACAGCCCACTAAAGATACTGCGTACACCAGCCTGCTCATTTGCGTTGCCCTTCG
GCCTTTAGACCTTGCTTCAGCCCCAAGGCCATCACCATAGCCATGGATTCCCTTCTTTCT
TCTTCTTCTTCTTCCTGCCAGCCTTCCCTGGATTTCTCCTGCGGCCGACGCTTCTGTGCT
TTGTCCGCCTCTTCTTCTGGACGCAACCTTCTGTTTCCTGGGCGGACCAACTCCTTCTCA
TTTTCTTTGCCTTCGCACAGATCTGCTCGCTTTCCTTGTATTCGATGCTGTAGTAGTAGC
CAAGACTCGAGCAGCAGCAGCAGCAGCAGCAATGCTGCGGGTGGATGGGACAATGATGAT
TGCAATTATCTAGAAGCCCAAGTTGTTGATGCTGTGAGCCTACTACCCTCCCAGGGCCAT
CTATACATGACTTTGTCGGATGGTGGGGAAGTGGAGGTCGACCATGTGAAGCCACCTAAA
CGTCCTCTACTTTTCCGATCCCGCAACCCCTCAATCTTCCTCAAAATTGTATCAGAGCCA
GATCTCATTCTACCAATTATTGTTCGTGATTCTGCCATTGACATGCTAATGAGTGCGCTT
CATGGAGAAGAGAAAGTTTTGAGGCCAAATCAGTACCACATC
■■Homology search results ■■ -
sp_hit_id Q27746
Definition sp|Q27746|DNMT1_PARLI DNA (cytosine-5)-methyltransferase PliMCI OS=Paracentrotus lividus
Align length 36
Score (bit) 32.7
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961455|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_C20, 5'
         (642 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q27746|DNMT1_PARLI DNA (cytosine-5)-methyltransferase PliMCI ...    33   1.6  
sp|Q6NZC7|S23IP_MOUSE SEC23-interacting protein OS=Mus musculus ...    31   6.3  
sp|P07646|VGLI_SUHVR Glycoprotein GP63 OS=Suid herpesvirus 1 (st...    30   8.1  
sp|Q44538|MODC2_AZOVI Molybdenum import ATP-binding protein modC...    30   8.1  

>sp|Q27746|DNMT1_PARLI DNA (cytosine-5)-methyltransferase PliMCI
           OS=Paracentrotus lividus GN=DNMT PE=2 SV=1
          Length = 1612

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 251 GKENEKELVRPGNRRLRPEEEADKAQKRRPQEKSRE 144
           GK+ E+E   PG +R++ EEE ++  K  P   SR+
Sbjct: 285 GKKEEEEPSGPGGKRIKKEEEEEEKAKVEPMSPSRD 320


>sp|Q6NZC7|S23IP_MOUSE SEC23-interacting protein OS=Mus musculus
           GN=Sec23ip PE=2 SV=2
          Length = 998

 Score = 30.8 bits (68), Expect = 6.3
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 184 SASSSGRNLLFPGRTNSFSFSLP 252
           SASSSG NLLF      FSF++P
Sbjct: 12  SASSSGTNLLFSSSATEFSFNVP 34


>sp|P07646|VGLI_SUHVR Glycoprotein GP63 OS=Suid herpesvirus 1
           (strain Rice) PE=3 SV=1
          Length = 350

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 448 PHHPTKSCIDGPGRVVGSQHQQLGLLD 368
           PHHPT S  D    VVGS H  L ++D
Sbjct: 171 PHHPTPSSADECRPVVGSWHDSLRVVD 197


>sp|Q44538|MODC2_AZOVI Molybdenum import ATP-binding protein modC 2
           OS=Azotobacter vinelandii GN=modC2 PE=3 SV=1
          Length = 358

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 560 IIGRMRSGSDTILRKIEGLRDRKSRGRLGGFTWSTST--SPPSDK 432
           ++GR  SG  T+LR I GL   +   ++GG  W  +T   PP  +
Sbjct: 33  LLGRSGSGKTTLLRAIAGLERAEGFLQVGGQLWQDATCFRPPHQR 77
tr_hit_id A9RZY8
Definition tr|A9RZY8|A9RZY8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 98
Score (bit) 105.0
E-value 2.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961455|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_C20, 5'
         (642 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RZY8|A9RZY8_PHYPA Predicted protein OS=Physcomitrella paten...   105   2e-21
tr|A9TSD4|A9TSD4_PHYPA Predicted protein OS=Physcomitrella paten...    70   8e-11
tr|A9P204|A9P204_PICSI Putative uncharacterized protein OS=Picea...    70   1e-10
tr|A9NUL3|A9NUL3_PICSI Putative uncharacterized protein OS=Picea...    49   3e-04
tr|Q9FWS6|Q9FWS6_ARATH F1B16.9 protein (Wound-responsive protein...    45   0.005
tr|Q9LW93|Q9LW93_TOBAC Nicotiana tabacum wound inducive mRNA , c...    44   0.008
tr|A7NT78|A7NT78_VITVI Chromosome chr18 scaffold_1, whole genome...    43   0.019
tr|A9TA66|A9TA66_PHYPA Predicted protein (Fragment) OS=Physcomit...    42   0.032
tr|Q9FWS0|Q9FWS0_ARATH F14P1.1 protein OS=Arabidopsis thaliana G...    42   0.042
tr|Q93VH2|Q93VH2_ARATH Putative uncharacterized protein At1g1966...    42   0.042
tr|Q8LA58|Q8LA58_ARATH Wound-responsive protein, putative OS=Ara...    42   0.042
tr|Q3S4H7|Q3S4H7_MAIZE Putative wound responsive protein OS=Zea ...    42   0.042
tr|B6SUR2|B6SUR2_MAIZE Wound responsive protein OS=Zea mays PE=2...    42   0.042
tr|Q6YZM6|Q6YZM6_ORYSJ Os08g0357000 protein OS=Oryza sativa subs...    41   0.072
tr|Q5N8J3|Q5N8J3_ORYSJ cDNA clone:J013022J10, full insert sequen...    41   0.072
tr|B8A8D2|B8A8D2_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.072
tr|B7FJ72|B7FJ72_MEDTR Putative uncharacterized protein OS=Medic...    41   0.072
tr|A9SUW4|A9SUW4_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.072
tr|A3BSC4|A3BSC4_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.072
tr|A2YUD2|A2YUD2_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.072
tr|Q09LL3|Q09LL3_9ORYZ DNA-binding protein DSP1 OS=Oryza minuta ...    39   0.21 
tr|A2ZWY9|A2ZWY9_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.21 
tr|A7R7G7|A7R7G7_VITVI Chromosome undetermined scaffold_1770, wh...    39   0.27 
tr|A7R1S1|A7R1S1_VITVI Chromosome chr4 scaffold_373, whole genom...    39   0.27 
tr|A9SCC6|A9SCC6_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.36 
tr|B6TCQ8|B6TCQ8_MAIZE Wound responsive protein OS=Zea mays PE=2...    38   0.61 
tr|A5AZ38|A5AZ38_VITVI Putative uncharacterized protein OS=Vitis...    36   2.3  
tr|A9RXB4|A9RXB4_PHYPA Predicted protein (Fragment) OS=Physcomit...    35   3.0  
tr|A9RQ75|A9RQ75_PHYPA Predicted protein OS=Physcomitrella paten...    35   3.0  
tr|A2EX20|A2EX20_TRIVA Putative uncharacterized protein OS=Trich...    35   3.0  

>tr|A9RZY8|A9RZY8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_179885 PE=4 SV=1
          Length = 306

 Score =  105 bits (263), Expect = 2e-21
 Identities = 51/98 (52%), Positives = 68/98 (69%)
 Frame = +1

Query: 343 GWDNDDCNYLEAQVVDAVSLLPSQGHLYMTLSDGGEVEVDHVKPPKRPLLFRSRNPSIFL 522
           G  N    YLEAQV+DAVS++P  G L MTL +G E+EVDH+ P K  LL++S  P+IFL
Sbjct: 56  GGGNSTSEYLEAQVMDAVSMVPFHGKLLMTLGNGMEMEVDHINPAKGRLLYKSSTPTIFL 115

Query: 523 KIVSEPDLILPIIVRDSAIDMLMSALHGEEKVLRPNQY 636
           K+    +L+LPI+V ++A+ MLM ALH +E   RPN Y
Sbjct: 116 KVTDGSNLMLPIVVGEAAVSMLMRALHDDEHASRPNYY 153


>tr|A9TSD4|A9TSD4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_197752 PE=4 SV=1
          Length = 215

 Score = 70.5 bits (171), Expect = 8e-11
 Identities = 32/62 (51%), Positives = 45/62 (72%)
 Frame = +1

Query: 451 VEVDHVKPPKRPLLFRSRNPSIFLKIVSEPDLILPIIVRDSAIDMLMSALHGEEKVLRPN 630
           +EVDH+ P K  LL++S  P+IFLK+    +L+LPI+V ++A+ MLM ALH +E V RPN
Sbjct: 1   MEVDHINPAKGRLLYKSSTPTIFLKVTDGSNLMLPIVVGEAAVSMLMRALHDDEHVGRPN 60

Query: 631 QY 636
            Y
Sbjct: 61  YY 62


>tr|A9P204|A9P204_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 352

 Score = 70.1 bits (170), Expect = 1e-10
 Identities = 43/115 (37%), Positives = 61/115 (53%), Gaps = 16/115 (13%)
 Frame = +1

Query: 346 WDNDDCNYLEAQVVD----------------AVSLLPSQGHLYMTLSDGGEVEVDHVKPP 477
           WD +D +Y+EA VVD                A  L  S   L   +++  E E D +   
Sbjct: 90  WDKNDGDYVEAHVVDTELLKHQQLRKQGLSGASGLWHSSDQLTTPINEAKESEADQISLI 149

Query: 478 KRPLLFRSRNPSIFLKIVSEPDLILPIIVRDSAIDMLMSALHGEEKVLRPNQYHI 642
           +  LL R RNP+IFL+I  + +L+LPIIV + AI  L+ ALH +EK  RPN + +
Sbjct: 150 EHGLLRRFRNPTIFLRIACDGNLLLPIIVGEFAIGKLIDALHEDEKGGRPNPFQL 204


>tr|A9NUL3|A9NUL3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 330

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 32/102 (31%), Positives = 50/102 (49%)
 Frame = +1

Query: 337 AGGWDNDDCNYLEAQVVDAVSLLPSQGHLYMTLSDGGEVEVDHVKPPKRPLLFRSRNPSI 516
           A  +  +D +Y+ + V++AV +        + + DG  V   H  P    L   +  P+I
Sbjct: 80  ADSFSENDEDYVNSSVIEAVEVKSGAEGFLIKMRDGRHVRCVHNNPEGGHLPDYAPQPAI 139

Query: 517 FLKIVSEPDLILPIIVRDSAIDMLMSALHGEEKVLRPNQYHI 642
            LK+    DL+LPIIV +    MLM+A+   + V RP  Y I
Sbjct: 140 VLKMEDGSDLLLPIIVLEMPSVMLMAAIRNVQ-VARPTVYQI 180


>tr|Q9FWS6|Q9FWS6_ARATH F1B16.9 protein (Wound-responsive protein,
           putative) (At1g75380/F1B16_15) OS=Arabidopsis thaliana
           GN=At1g75380 PE=2 SV=1
          Length = 325

 Score = 44.7 bits (104), Expect = 0.005
 Identities = 28/104 (26%), Positives = 52/104 (50%)
 Frame = +1

Query: 331 NAAGGWDNDDCNYLEAQVVDAVSLLPSQGHLYMTLSDGGEVEVDHVKPPKRPLLFRSRNP 510
           + A  ++ +D  Y+ + VV+AV +        + + DG ++   H  P    L   + +P
Sbjct: 75  STAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRDGRQLRCVHNNPQGGHLPDYAPHP 134

Query: 511 SIFLKIVSEPDLILPIIVRDSAIDMLMSALHGEEKVLRPNQYHI 642
           +I LK+     L+LPIIV +    +LM+A+   + + RP  Y +
Sbjct: 135 AIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQ-IARPTMYQV 177


>tr|Q9LW93|Q9LW93_TOBAC Nicotiana tabacum wound inducive mRNA ,
           complete cds OS=Nicotiana tabacum PE=2 SV=1
          Length = 317

 Score = 43.9 bits (102), Expect = 0.008
 Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 2/163 (1%)
 Frame = +1

Query: 160 CGRRFCALSASSSGRNLLFPGRTNSFSFSLPSHRSARFPCIRCCXXXXXXXXXXXXXNA- 336
           CG+R   +++S     +L   R+  + F+  S R A  P  R               N  
Sbjct: 14  CGKRTGPVNSSIVKAKML---RSEFWGFNGISSRVACLPRSRVSKLIGCSFSSSSNGNGS 70

Query: 337 -AGGWDNDDCNYLEAQVVDAVSLLPSQGHLYMTLSDGGEVEVDHVKPPKRPLLFRSRNPS 513
            A  +   D +Y+ + VV+AV +   +    + + DG  ++     P    +   +  P+
Sbjct: 71  MAENFSESDADYVNSSVVEAVEVRSGKDGFVIKMRDGRHLKCVPSNPQCGHIPDYAPQPA 130

Query: 514 IFLKIVSEPDLILPIIVRDSAIDMLMSALHGEEKVLRPNQYHI 642
           I L++     L+LPIIV +    +LM+A+   + + RP  YH+
Sbjct: 131 IVLRMEDGTGLLLPIIVLEMPSVLLMAAVRNIQ-LARPTMYHV 172


>tr|A7NT78|A7NT78_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014565001
           PE=4 SV=1
          Length = 308

 Score = 42.7 bits (99), Expect = 0.019
 Identities = 27/102 (26%), Positives = 51/102 (50%)
 Frame = +1

Query: 337 AGGWDNDDCNYLEAQVVDAVSLLPSQGHLYMTLSDGGEVEVDHVKPPKRPLLFRSRNPSI 516
           A  ++ +D +Y+ + VV+AV +        + + DG  +   H  P    +   + +P+I
Sbjct: 82  AENFNENDEDYVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHMPDYAPHPAI 141

Query: 517 FLKIVSEPDLILPIIVRDSAIDMLMSALHGEEKVLRPNQYHI 642
            LK+     L+LPIIV +    +LM+A+   + + RP  Y +
Sbjct: 142 VLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQ-IARPTLYQV 182


>tr|A9TA66|A9TA66_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_16562 PE=4 SV=1
          Length = 248

 Score = 42.0 bits (97), Expect = 0.032
 Identities = 26/98 (26%), Positives = 51/98 (52%)
 Frame = +1

Query: 349 DNDDCNYLEAQVVDAVSLLPSQGHLYMTLSDGGEVEVDHVKPPKRPLLFRSRNPSIFLKI 528
           +ND+ +Y+++ V++A+ +        + + DG  ++ +H  P    L      P+I L++
Sbjct: 3   ENDE-DYVDSTVLEALEVKSGPEGFIIKMRDGRFLKCEHNMPESGHLPEYGPQPAIVLQL 61

Query: 529 VSEPDLILPIIVRDSAIDMLMSALHGEEKVLRPNQYHI 642
            +   L+LPIIV +    ML+ A+     + RP  YH+
Sbjct: 62  NNASKLLLPIIVLELPCTMLLEAVR-NVPISRPTVYHV 98


>tr|Q9FWS0|Q9FWS0_ARATH F14P1.1 protein OS=Arabidopsis thaliana
           GN=F14P1.1 PE=4 SV=1
          Length = 329

 Score = 41.6 bits (96), Expect = 0.042
 Identities = 26/104 (25%), Positives = 53/104 (50%)
 Frame = +1

Query: 331 NAAGGWDNDDCNYLEAQVVDAVSLLPSQGHLYMTLSDGGEVEVDHVKPPKRPLLFRSRNP 510
           + A  ++ +D +Y+++ V++AV +        + + DG ++   H  P    L   + + 
Sbjct: 79  STAENFNENDEDYVKSSVLEAVEVKSGPDGFMVKMKDGRQLRCVHNNPQGGNLPNYAPHS 138

Query: 511 SIFLKIVSEPDLILPIIVRDSAIDMLMSALHGEEKVLRPNQYHI 642
           +I LK+     L+LPIIV +    +LM+A+   + + RP  Y +
Sbjct: 139 AIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQ-IARPTMYQV 181


>tr|Q93VH2|Q93VH2_ARATH Putative uncharacterized protein At1g19660
           OS=Arabidopsis thaliana GN=At1g19660 PE=2 SV=1
          Length = 329

 Score = 41.6 bits (96), Expect = 0.042
 Identities = 26/104 (25%), Positives = 53/104 (50%)
 Frame = +1

Query: 331 NAAGGWDNDDCNYLEAQVVDAVSLLPSQGHLYMTLSDGGEVEVDHVKPPKRPLLFRSRNP 510
           + A  ++ +D +Y+++ V++AV +        + + DG ++   H  P    L   + + 
Sbjct: 79  STAENFNENDEDYVKSSVLEAVEVKSGPDGFMVKMKDGRQLRCVHNNPQGGNLPNYAPHS 138

Query: 511 SIFLKIVSEPDLILPIIVRDSAIDMLMSALHGEEKVLRPNQYHI 642
           +I LK+     L+LPIIV +    +LM+A+   + + RP  Y +
Sbjct: 139 AIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQ-IARPTMYQV 181