DK961440 |
Clone id |
TST39A01NGRL0010_C03 |
Library |
TST39 |
Length |
280 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_C03. 5' end sequence. |
Accession |
DK961440 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GGCCTTTCAGCATGTCAGCCCGAATCGACTCTGATCACCAATTCTTCCCCTCCACTATGC CTTGTATGTTGTTGCTTCCATGTCTTCTGCTGCCACTACCACTACTAGCAGGGTCCTGCT TAAATTACACATTTGAAAATAAAACCCCATCCAGCGCAAGGACCATCATTACCGTCTCAG CCTTCGATGAACTCTCCCGGAAAAAAACCGACCCATCCCATGCAAAACCCTATAGTGACT GTTATTAACCCGTGTAAACTACGAATAATTAAGACCAGCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8K4G1 |
Definition |
sp|Q8K4G1|LTBP4_MOUSE Latent-transforming growth factor beta-binding protein 4 OS=Mus musculus |
Align length |
38 |
Score (bit) |
30.8 |
E-value |
2.2 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961440|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0010_C03, 5' (280 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q8K4G1|LTBP4_MOUSE Latent-transforming growth factor beta-bin... 31 2.2 sp|A8MZA4|GG6L6_HUMAN Putative golgin subfamily A member 6-like ... 31 2.2 sp|Q8N7Z2|GG6L1_HUMAN Golgin subfamily A member 6-like protein 1... 30 2.9 sp|Q8MTI2|BSL1_TRIVA Putative surface protein bspA-like OS=Trich... 30 3.7 sp|Q54TH6|Y9863_DICDI Probable serine/threonine-protein kinase D... 30 4.9 sp|Q8BRH4|MLL3_MOUSE Histone-lysine N-methyltransferase MLL3 OS=... 30 4.9 sp|P45561|AMEL_PIG Amelogenin OS=Sus scrofa GN=AMEL PE=1 SV=2 30 4.9 sp|Q99217|AMELX_HUMAN Amelogenin, X isoform OS=Homo sapiens GN=A... 30 4.9 sp|Q8ND04|CQ071_HUMAN UPF0487 protein C17orf71 OS=Homo sapiens G... 29 6.4 sp|Q99004|AMELY_BOVIN Amelogenin, Y isoform OS=Bos taurus GN=AME... 29 8.3
>sp|Q8K4G1|LTBP4_MOUSE Latent-transforming growth factor beta-binding protein 4 OS=Mus musculus GN=Ltbp4 PE=2 SV=1 Length = 1666
Score = 30.8 bits (68), Expect = 2.2 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +1
Query: 142 KPHPAQGPSLPSQPSMNSPGKKPTHPMQNPIVTVINPC 255 +P PSLP++P P ++P+ P Q P+ + C Sbjct: 1188 QPQAPASPSLPARPPAPPPPRRPSPPRQGPVSSGRREC 1225
>sp|A8MZA4|GG6L6_HUMAN Putative golgin subfamily A member 6-like protein 6 OS=Homo sapiens PE=5 SV=2 Length = 620
Score = 30.8 bits (68), Expect = 2.2 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +1
Query: 130 HLKIKPHPAQGPSLPSQPSMNSPGKKPTHPMQN 228 HL PH P LP+ P + + PTHPM + Sbjct: 18 HLPTHPHLPTHPHLPTHPHLPTHPHLPTHPMMS 50
>sp|Q8N7Z2|GG6L1_HUMAN Golgin subfamily A member 6-like protein 1 OS=Homo sapiens PE=2 SV=1 Length = 621
Score = 30.4 bits (67), Expect = 2.9 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +1
Query: 130 HLKIKPHPAQGPSLPSQPSMNSPGKKPTHPMQN 228 HL PH P LP+ P + + PTHPM + Sbjct: 14 HLPTHPHLPTHPHLPTHPHVPTHPHLPTHPMMS 46
>sp|Q8MTI2|BSL1_TRIVA Putative surface protein bspA-like OS=Trichomonas vaginalis GN=BSPAL1 PE=4 SV=1 Length = 625
Score = 30.0 bits (66), Expect = 3.7 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 9/52 (17%) Frame = +1
Query: 124 ITHLKIKPHPAQGPSLPSQP---------SMNSPGKKPTHPMQNPIVTVINP 252 ITH + + +P Q P+QP + N PG+ P+ P +NP NP Sbjct: 436 ITHKQSEENPNQPGENPNQPGENPNQPGENPNQPGENPSQPGENPSQPGENP 487
Score = 29.3 bits (64), Expect = 6.4 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Frame = +1
Query: 148 HPAQGPSLPSQP--SMNSPGKKPTHPMQNPIVTVINP 252 +P+Q PSQP + N PG+ P+ P +NP NP Sbjct: 472 NPSQPGENPSQPGENPNQPGENPSQPGENPNQPGENP 508
>sp|Q54TH6|Y9863_DICDI Probable serine/threonine-protein kinase DDB_G0281745 OS=Dictyostelium discoideum GN=DDB_G0281745 PE=3 SV=1 Length = 597
Score = 29.6 bits (65), Expect = 4.9 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +1
Query: 157 QGPSLPSQPSMNSPGKKPTHPMQ 225 Q PS PS PS P ++PT P+Q Sbjct: 171 QSPSRPSIPSFEPPTQQPTQPLQ 193
>sp|Q8BRH4|MLL3_MOUSE Histone-lysine N-methyltransferase MLL3 OS=Mus musculus GN=Mll3 PE=2 SV=2 Length = 4903
Score = 29.6 bits (65), Expect = 4.9 Identities = 13/25 (52%), Positives = 13/25 (52%) Frame = +1
Query: 145 PHPAQGPSLPSQPSMNSPGKKPTHP 219 P P GPSL P N P K P HP Sbjct: 2019 PDPYAGPSLTPAPLGNGPFKTPLHP 2043
>sp|P45561|AMEL_PIG Amelogenin OS=Sus scrofa GN=AMEL PE=1 SV=2 Length = 189
Score = 29.6 bits (65), Expect = 4.9 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +1
Query: 130 HLKIKPHPAQGPSLPSQPSMNSPGKKPTHPMQN 228 H I PAQ P +P QP M PG+ P Q+ Sbjct: 83 HHHIPMVPAQQPGIPQQPMMPLPGQHSMTPTQH 115
>sp|Q99217|AMELX_HUMAN Amelogenin, X isoform OS=Homo sapiens GN=AMELX PE=1 SV=1 Length = 191
Score = 29.6 bits (65), Expect = 4.9 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +1
Query: 130 HLKIKPHPAQGPSLPSQPSMNSPGKKPTHPMQN 228 H I PAQ P +P QP M PG+ P+Q+ Sbjct: 82 HHHIPVVPAQQPVIPQQPMMPVPGQHSMTPIQH 114
>sp|Q8ND04|CQ071_HUMAN UPF0487 protein C17orf71 OS=Homo sapiens GN=C17orf71 PE=1 SV=1 Length = 991
Score = 29.3 bits (64), Expect = 6.4 Identities = 11/43 (25%), Positives = 24/43 (55%) Frame = +1
Query: 133 LKIKPHPAQGPSLPSQPSMNSPGKKPTHPMQNPIVTVINPCKL 261 LK++P Q P+ P +P +SP ++ H +++ I + ++ Sbjct: 275 LKVEPPRNQDPAHPDKPKKHSPKRRLQHALEDQIYRIFRKSRV 317
>sp|Q99004|AMELY_BOVIN Amelogenin, Y isoform OS=Bos taurus GN=AMELY PE=2 SV=1 Length = 192
Score = 28.9 bits (63), Expect = 8.3 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 6/36 (16%) Frame = +1
Query: 139 IKPH------PAQGPSLPSQPSMNSPGKKPTHPMQN 228 ++PH PAQ P +P QP M PG+ P+Q+ Sbjct: 80 LQPHHHNPMVPAQQPVVPQQPMMPVPGQHSMTPIQH 115
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A2ZYH8 |
Definition |
tr|A2ZYH8|A2ZYH8_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica |
Align length |
27 |
Score (bit) |
37.0 |
E-value |
0.5 |
Report |
|