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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961430
Clone id TST39A01NGRL0010_B15
Library
Length 716
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_B15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CGTCCTTTTCTCCATCGCCATGGCGACCTTCGCAGGAGCCTCGCAGTCACAGATACCTTA
GTAAGAAACTGTCTATGTTTCATGCGGGTGCTCCTTACTGGATAACTCGCGAGACGACCA
TGTTTTCCGCCCTTTCCCCTATCAAACTCCCTGGCAGCATTGCGTAGCAGGTACATTGCG
CAGATAAAGATCAGCCATGAATGGAAATCTTGCAATACAGCATTCTATTTCGCCGTCAAG
CTTTCTAAGAAATCTTTCGCTTGCAAGCTGTCCTACTAGGAGAGAAGTTTGTTTCAAGGC
ATGACACTTTTTACGTACAACCGTCCTTCATCTTTTCACTTCGCTTTGCATAAAGGACCA
TACACCGTCCATTATTTTTACCCCAGCCGAAACTGCGTCAAAGAAAAGTTTCAACAAAGG
CCTTTCCTATTTCATTGCATCGGCATGTGCAGACCGGTAGCAAAATTTTCCTTCGTTTTT
CCTGGAGATTTTACTGATCAGCAGATGATTACAACATTGTCCTAGTACCAGACATGCAGA
TTGCTTCATGTACATTCATTGCAGTTCTTTGGATTGCGTGGCTTCCCTTTTGCTTCTCCC
TTTCACGAGAAGGTTCAATACTCTTCAATTTCAGCAGAAATTTTCATGCAGACACTCTTG
GCGCTNTCCATGGATGGAACGACACAGATGAGACCCCCTTGTGGTTGGTCTGGGAT
■■Homology search results ■■ -
sp_hit_id Q1E5T3
Definition sp|Q1E5T3|CHL1_COCIM ATP-dependent RNA helicase CHL1 OS=Coccidioides immitis
Align length 37
Score (bit) 32.7
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961430|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_B15, 5'
         (716 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1E5T3|CHL1_COCIM ATP-dependent RNA helicase CHL1 OS=Coccidio...    33   2.0  
sp|Q1D6E3|SYT_MYXXD Threonyl-tRNA synthetase OS=Myxococcus xanth...    32   3.4  
sp|Q9VN03|SUV3_DROME ATP-dependent RNA helicase SUV3 homolog, mi...    32   4.5  
sp|Q5SWW4|MED13_MOUSE Mediator of RNA polymerase II transcriptio...    31   7.7  
sp|Q9UHV7|MED13_HUMAN Mediator of RNA polymerase II transcriptio...    31   7.7  

>sp|Q1E5T3|CHL1_COCIM ATP-dependent RNA helicase CHL1
           OS=Coccidioides immitis GN=CHL1 PE=3 SV=1
          Length = 861

 Score = 32.7 bits (73), Expect = 2.0
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -1

Query: 410 NFSLTQFRLG*K*WTVYGPLCKAK*KDEGRLYVKSVM 300
           N SLTQ R+G +  T+Y    KA+ K + R+YV  VM
Sbjct: 392 NVSLTQLRIGLEQLTIYARKYKARLKGKNRVYVAQVM 428


>sp|Q1D6E3|SYT_MYXXD Threonyl-tRNA synthetase OS=Myxococcus xanthus
           (strain DK 1622) GN=thrS PE=3 SV=1
          Length = 642

 Score = 32.0 bits (71), Expect = 3.4
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = +3

Query: 42  RSHRYLSKKLSMFH-----AGAPYWITRETTMFSALS 137
           R HR L K+L +FH      G+ +W  + TT+++ LS
Sbjct: 247 RDHRKLGKELDLFHFHPYSPGSAFWTPKGTTLYTTLS 283


>sp|Q9VN03|SUV3_DROME ATP-dependent RNA helicase SUV3 homolog,
           mitochondrial OS=Drosophila melanogaster GN=CG9791 PE=1
           SV=2
          Length = 758

 Score = 31.6 bits (70), Expect = 4.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 306 TFYVQPSFIFSLRFA*RTIHRPLFLPQPKLRQRKVSTKAFPISLHRHVQT 455
           T Y++PSF   L    R +HR  FL   K  +  +ST   P+ +H +V +
Sbjct: 17  TLYLRPSFSIDLSL--RRLHRAAFLFSRKKPETNLSTLFKPVQVHAYVDS 64


>sp|Q5SWW4|MED13_MOUSE Mediator of RNA polymerase II transcription
           subunit 13 OS=Mus musculus GN=Med13 PE=2 SV=1
          Length = 2171

 Score = 30.8 bits (68), Expect = 7.7
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 585 PFCFSLSREGSILFNFSRNFHADTLGAXHGWNDTDETPLWLVW 713
           P  F ++ E  IL +FSR   AD LG            LW+ W
Sbjct: 42  PILFPVTEEDPILSSFSRCLKADVLGVWRRDQRPGRRELWIFW 84


>sp|Q9UHV7|MED13_HUMAN Mediator of RNA polymerase II transcription
           subunit 13 OS=Homo sapiens GN=MED13 PE=1 SV=2
          Length = 2174

 Score = 30.8 bits (68), Expect = 7.7
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 585 PFCFSLSREGSILFNFSRNFHADTLGAXHGWNDTDETPLWLVW 713
           P  F ++ E  IL +FSR   AD LG            LW+ W
Sbjct: 42  PILFPVTEEDPILSSFSRCLKADVLGVWRRDQRPGRRELWIFW 84
tr_hit_id Q91GE2
Definition tr|Q91GE2|Q91GE2_NPVEP Putative uncharacterized protein OS=Epiphyas postvittana nucleopolyhedrovirus
Align length 87
Score (bit) 35.0
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961430|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_B15, 5'
         (716 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q91GE2|Q91GE2_NPVEP Putative uncharacterized protein OS=Epiph...    35   4.9  
tr|A9DLM1|A9DLM1_9FLAO Putative uncharacterized protein OS=Kordi...    35   6.4  
tr|Q0V9Y6|Q0V9Y6_XENTR LOC548667 protein OS=Xenopus tropicalis G...    34   8.3  
tr|Q1R2N0|Q1R2N0_ECOUT Putative uncharacterized protein OS=Esche...    34   8.3  
tr|Q0T921|Q0T921_ECOL5 Putative uncharacterized protein OS=Esche...    34   8.3  
tr|B4TEH3|B4TEH3_SALHS Putative uncharacterized protein OS=Salmo...    34   8.3  
tr|Q8G9U6|Q8G9U6_ECOLX Putative uncharacterized protein OS=Esche...    34   8.3  
tr|B7LD31|B7LD31_ECOLX Putative uncharacterized protein OS=Esche...    34   8.3  
tr|B3HN60|B3HN60_ECOLX Putative uncharacterized protein OS=Esche...    34   8.3  

>tr|Q91GE2|Q91GE2_NPVEP Putative uncharacterized protein OS=Epiphyas
           postvittana nucleopolyhedrovirus PE=4 SV=1
          Length = 147

 Score = 35.0 bits (79), Expect = 4.9
 Identities = 25/87 (28%), Positives = 38/87 (43%)
 Frame = +1

Query: 133 FPLSNSLAALRSRYIAQIKISHEWKSCNTAFYFAVKLSKKSFACKLSY*ERSLFQGMTLF 312
           F L    AA+R  YI QIK      +CNTA Y  +    + +    +Y          + 
Sbjct: 7   FVLVIMFAAVRCSYIVQIK------NCNTATYEILLYQNRYY----NY----------IS 46

Query: 313 TYNRPSSFHFALHKGPYTVHYFYPSRN 393
            YN+   + F LH+  Y  H+ Y ++N
Sbjct: 47  IYNKNEKYDFCLHRYDYKEHFTYTAKN 73


>tr|A9DLM1|A9DLM1_9FLAO Putative uncharacterized protein OS=Kordia
           algicida OT-1 GN=KAOT1_15297 PE=4 SV=1
          Length = 233

 Score = 34.7 bits (78), Expect = 6.4
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +1

Query: 430 FHCIGMCRPVAKFSFVFPGDFTDQ-QMITTLS*YQTCRLLHVHSLQF-FGLRG 582
           FHC+GMC P+A   F+ P D  +  + +  +S Y   RLL   ++ F FGL G
Sbjct: 14  FHCVGMCGPIA---FMLPVDRNNSYKKVAQISLYHIGRLLSYATIGFVFGLLG 63


>tr|Q0V9Y6|Q0V9Y6_XENTR LOC548667 protein OS=Xenopus tropicalis
           GN=LOC548667 PE=2 SV=1
          Length = 419

 Score = 34.3 bits (77), Expect = 8.3
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +2

Query: 350 IKDHT----PSIIFTPAETASKKSFNKGLSYFIASACADR*QNFPSFFLEILLISR*LQH 517
           IKD++    P ++ T  + + K S N+ LS   AS+CAD+ +N      E  L+      
Sbjct: 297 IKDYSKVALPDMVSTHNDQSRKGSLNQNLSTKPASSCADKLENNAQLDRENHLV------ 350

Query: 518 CPSTRHADCFMYIH 559
            PS    +CF Y H
Sbjct: 351 -PSHGKGECFRYYH 363


>tr|Q1R2N0|Q1R2N0_ECOUT Putative uncharacterized protein
           OS=Escherichia coli (strain UTI89 / UPEC) GN=UTI89_C4981
           PE=4 SV=1
          Length = 243

 Score = 34.3 bits (77), Expect = 8.3
 Identities = 27/82 (32%), Positives = 39/82 (47%)
 Frame = +1

Query: 364 TVHYFYPSRNCVKEKFQQRPFLFHCIGMCRPVAKFSFVFPGDFTDQQMITTLS*YQTCRL 543
           T+HYF+  R   KEK ++    +H I +     K ++  PGDFT    + TL     C  
Sbjct: 84  TLHYFW-CREFGKEKGRKH---YHVILLLN---KDTWCSPGDFTVPSSLATLIKLAWCSA 136

Query: 544 LHVHSLQFFGLRGFPFASPFHE 609
           LH+   Q  GL  F   +PF +
Sbjct: 137 LHLEPWQGNGLVHFSRRTPFRK 158


>tr|Q0T921|Q0T921_ECOL5 Putative uncharacterized protein
           OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC)
           GN=ECP_4622 PE=4 SV=1
          Length = 243

 Score = 34.3 bits (77), Expect = 8.3
 Identities = 27/82 (32%), Positives = 39/82 (47%)
 Frame = +1

Query: 364 TVHYFYPSRNCVKEKFQQRPFLFHCIGMCRPVAKFSFVFPGDFTDQQMITTLS*YQTCRL 543
           T+HYF+  R   KEK ++    +H I +     K ++  PGDFT    + TL     C  
Sbjct: 84  TLHYFW-CREFGKEKGRKH---YHVILLLN---KDTWCSPGDFTVPSSLATLIKLAWCSA 136

Query: 544 LHVHSLQFFGLRGFPFASPFHE 609
           LH+   Q  GL  F   +PF +
Sbjct: 137 LHLEPWQGNGLVHFSRRTPFRK 158


>tr|B4TEH3|B4TEH3_SALHS Putative uncharacterized protein
           OS=Salmonella heidelberg (strain SL476) GN=SeHA_C4689
           PE=4 SV=1
          Length = 243

 Score = 34.3 bits (77), Expect = 8.3
 Identities = 27/82 (32%), Positives = 39/82 (47%)
 Frame = +1

Query: 364 TVHYFYPSRNCVKEKFQQRPFLFHCIGMCRPVAKFSFVFPGDFTDQQMITTLS*YQTCRL 543
           T+HYF+  R   KEK ++    +H I +     K ++  PGDFT    + TL     C  
Sbjct: 84  TLHYFW-CREFGKEKGRKH---YHVILLLN---KDTWCSPGDFTVPSSLATLIKLAWCSA 136

Query: 544 LHVHSLQFFGLRGFPFASPFHE 609
           LH+   Q  GL  F   +PF +
Sbjct: 137 LHLEPWQGNGLVHFSRRTPFRK 158


>tr|Q8G9U6|Q8G9U6_ECOLX Putative uncharacterized protein
           OS=Escherichia coli PE=4 SV=1
          Length = 243

 Score = 34.3 bits (77), Expect = 8.3
 Identities = 27/82 (32%), Positives = 39/82 (47%)
 Frame = +1

Query: 364 TVHYFYPSRNCVKEKFQQRPFLFHCIGMCRPVAKFSFVFPGDFTDQQMITTLS*YQTCRL 543
           T+HYF+  R   KEK ++    +H I +     K ++  PGDFT    + TL     C  
Sbjct: 84  TLHYFW-CREFGKEKGRKH---YHVILLLN---KDTWCSPGDFTVPSSLATLIKLAWCSA 136

Query: 544 LHVHSLQFFGLRGFPFASPFHE 609
           LH+   Q  GL  F   +PF +
Sbjct: 137 LHLEPWQGNGLVHFSRRTPFRK 158


>tr|B7LD31|B7LD31_ECOLX Putative uncharacterized protein
           OS=Escherichia coli GN=EC55989_4880 PE=4 SV=1
          Length = 243

 Score = 34.3 bits (77), Expect = 8.3
 Identities = 27/82 (32%), Positives = 39/82 (47%)
 Frame = +1

Query: 364 TVHYFYPSRNCVKEKFQQRPFLFHCIGMCRPVAKFSFVFPGDFTDQQMITTLS*YQTCRL 543
           T+HYF+  R   KEK ++    +H I +     K ++  PGDFT    + TL     C  
Sbjct: 84  TLHYFW-CREFGKEKGRKH---YHVILLLN---KDTWCSPGDFTVPSSLATLIQLAWCSA 136

Query: 544 LHVHSLQFFGLRGFPFASPFHE 609
           LH+   Q  GL  F   +PF +
Sbjct: 137 LHLEPWQGNGLVHFSRRTPFRK 158


>tr|B3HN60|B3HN60_ECOLX Putative uncharacterized protein
           OS=Escherichia coli F11 GN=EcF11_0670 PE=4 SV=1
          Length = 243

 Score = 34.3 bits (77), Expect = 8.3
 Identities = 27/82 (32%), Positives = 39/82 (47%)
 Frame = +1

Query: 364 TVHYFYPSRNCVKEKFQQRPFLFHCIGMCRPVAKFSFVFPGDFTDQQMITTLS*YQTCRL 543
           T+HYF+  R   KEK ++    +H I +     K ++  PGDFT    + TL     C  
Sbjct: 84  TLHYFW-CREFGKEKGRKH---YHVILLLN---KDTWCSPGDFTVPSSLATLIKLAWCSA 136

Query: 544 LHVHSLQFFGLRGFPFASPFHE 609
           LH+   Q  GL  F   +PF +
Sbjct: 137 LHLEPWQGNGLVHFSRRTPFRK 158