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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961426
Clone id TST39A01NGRL0010_B08
Library
Length 651
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_B08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GACGCGCGCGTTTGTGTAGAGAGAGCGAGAGCGCGTTTTCCATTTTCTCTGTCTCATCCT
TTGGTCCGGGTCTTCTTACAGGGCTTTAAGTCATGGAAGCCACAATGAAACTAGCATCCT
TTTCATTGAATGCTCCTCTTGCGAGCACTGCATTGGGTAAGGCTCGCACCACGCCTTCTT
GCTCGCTGAATTACATGGGTTTCCCTTCTCGAACAGCTCAACTCTCTACCCGTTGTCACG
CCACCACACAGTCGTCGACAGTGGCCGATTGTGGAGATGTCTTCAAGATCTTTGCAGACG
ACAGCACAGGTGTCGTTTGCTATAAAAATGAACTCGGCGAAATGGTCTGCGAAGGCTTAG
ATGAGGGCCCCCACTTTTACCCCCAATTGGGTTTCAAAGATGGGCCTTCAAGTATGTATG
TTGCAGATAATCAAGCTGCCCAGATTCTCCCAATATTTGATCAACCCATGTACGAGATTT
GAGAGTTGAGCAGAAGGCAAGGTATTGAAAGAAGGGGAGGTATTTAAGTTGTACTTACTA
GTGTGGAAATGCCATTCCTGAACATTTGAACATGGTCTTCAACTTGTGTATACTACATAC
TTAATATTATTTCTGCCAGGATTGTTTTCCAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9SCU9
Definition sp|Q9SCU9|BGL13_ARATH Beta-galactosidase 13 OS=Arabidopsis thaliana
Align length 55
Score (bit) 33.5
E-value 0.92
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961426|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_B08, 5'
         (630 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SCU9|BGL13_ARATH Beta-galactosidase 13 OS=Arabidopsis thali...    33   0.92 
sp|Q9SCV1|BGL11_ARATH Beta-galactosidase 11 OS=Arabidopsis thali...    33   1.6  
sp|O75369|FLNB_HUMAN Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=1       33   1.6  
sp|O75628|REM1_HUMAN GTP-binding protein REM 1 OS=Homo sapiens G...    32   2.1  
sp|A6LL68|ERA_THEM4 GTP-binding protein era homolog OS=Thermosip...    31   4.6  
sp|Q80X90|FLNB_MOUSE Filamin-B OS=Mus musculus GN=Flnb PE=2 SV=2       31   4.6  
sp|Q3AEZ3|ERA_CARHZ GTP-binding protein era homolog OS=Carboxydo...    31   6.0  
sp|Q9SMY8|FBL15_ARATH F-box/LRR-repeat protein 15 OS=Arabidopsis...    30   7.9  

>sp|Q9SCU9|BGL13_ARATH Beta-galactosidase 13 OS=Arabidopsis thaliana
           GN=BGAL13 PE=2 SV=1
          Length = 848

 Score = 33.5 bits (75), Expect = 0.92
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +2

Query: 53  LILWSGSSYRALSHGSHNETSILFIECSSCEHCIG*GSHHAFLLAELHGFPFSNS 217
           L +W    Y    HGSH E S +F +  + +     G +H  +L  L GFP S S
Sbjct: 521 LHVWLNGEYLGNGHGSHEEKSFVFQKPVTLKE----GENHLTMLGVLTGFPDSGS 571


>sp|Q9SCV1|BGL11_ARATH Beta-galactosidase 11 OS=Arabidopsis thaliana
           GN=BGAL11 PE=2 SV=1
          Length = 845

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +2

Query: 62  WSGSSYRALSHGSHNETSILFIECSSCEHCIG*GSHHAFLLAELHGFPFSNS 217
           W    Y    HGSH E S +F +    +  +  G +H  +L  L GFP S S
Sbjct: 521 WLNGEYLGSGHGSHEEKSFVFQK----QVTLKAGENHLVMLGVLTGFPDSGS 568


>sp|O75369|FLNB_HUMAN Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=1
          Length = 2602

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 226  LPVVTPPHSRRQWPIVEMSSRSLQTTAQVSFAIKMNSAKWSAKA*MRAPT 375
            +PV+ P    R+  ++ +    L+     SFAI++N AK    A + +P+
Sbjct: 2278 VPVIAPSDDARRLTVMSLQESGLKVNQPASFAIRLNGAKGKIDAKVHSPS 2327


>sp|O75628|REM1_HUMAN GTP-binding protein REM 1 OS=Homo sapiens
           GN=REM1 PE=1 SV=2
          Length = 298

 Score = 32.3 bits (72), Expect = 2.1
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
 Frame = -2

Query: 308 CAVV--CKDLEDISTIGH-CRRLCGGV----------TTGRELSCSRRETHVIQRARRRG 168
           CAVV  CK +E  +T+ H    L  GV          +  +E    RR   + QRARR  
Sbjct: 213 CAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRDSAAKEPPAPRRPASLAQRARRFL 272

Query: 167 ASLTQCSARKRSIQ 126
           A LT  SAR+R+++
Sbjct: 273 ARLTARSARRRALK 286


>sp|A6LL68|ERA_THEM4 GTP-binding protein era homolog OS=Thermosipho
           melanesiensis (strain BI429 / DSM 12029) GN=era PE=3
           SV=1
          Length = 299

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +3

Query: 261 VADCGDVFKIFADDSTGVVCYKNELGEMVCEGLDEGPHFYPQLGFKDGPSSMYVAD 428
           + +C  + K  A  + G      EL +++ E L EGP +YP+    D P S  V++
Sbjct: 140 LTNCISIVKTSATRNEGT----KELLDLIIENLPEGPQYYPEDMVTDRPLSFMVSE 191


>sp|Q80X90|FLNB_MOUSE Filamin-B OS=Mus musculus GN=Flnb PE=2 SV=2
          Length = 2602

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 226  LPVVTPPHSRRQWPIVEMSSRSLQTTAQVSFAIKMNSAKWSAKA*MRAPT 375
            +PV+ P    R   ++ +    L+     SFAI++N AK    A + +P+
Sbjct: 2278 VPVIAPSDDARCLTVLSLQESGLKVNQPASFAIRLNGAKGKIDAKVHSPS 2327


>sp|Q3AEZ3|ERA_CARHZ GTP-binding protein era homolog
           OS=Carboxydothermus hydrogenoformans (strain Z-2901 /
           DSM 6008) GN=era PE=3 SV=1
          Length = 298

 Score = 30.8 bits (68), Expect = 6.0
 Identities = 21/56 (37%), Positives = 29/56 (51%)
 Frame = +3

Query: 282 FKIFADDSTGVVCYKNELGEMVCEGLDEGPHFYPQLGFKDGPSSMYVADNQAAQIL 449
           + I A + TGV    +EL E + E L EGP +YP+    D P    +A+    QIL
Sbjct: 148 YYISALNGTGV----SELVEGIFELLPEGPPYYPEGQVTDYPERFIIAEYIREQIL 199


>sp|Q9SMY8|FBL15_ARATH F-box/LRR-repeat protein 15 OS=Arabidopsis
           thaliana GN=FBL15 PE=1 SV=2
          Length = 990

 Score = 30.4 bits (67), Expect = 7.9
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -1

Query: 513 FFQYLAFCSTLKSRTWVDQILGESGQLDYLQHTYLK 406
           FFQ L  C+ L+S T  D ILG   Q  +L H  L+
Sbjct: 297 FFQALGECNMLRSVTVSDAILGNGAQEIHLSHDRLR 332
tr_hit_id A9SQE0
Definition tr|A9SQE0|A9SQE0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 34
Score (bit) 55.1
E-value 3.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961426|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_B08, 5'
         (630 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SQE0|A9SQE0_PHYPA Predicted protein OS=Physcomitrella paten...    55   3e-06
tr|A9NNE4|A9NNE4_PICSI Putative uncharacterized protein OS=Picea...    53   1e-05
tr|A9TMJ3|A9TMJ3_PHYPA Predicted protein OS=Physcomitrella paten...    52   2e-05
tr|B6UGC8|B6UGC8_MAIZE Putative uncharacterized protein OS=Zea m...    51   5e-05
tr|A7P6B3|A7P6B3_VITVI Chromosome chr9 scaffold_7, whole genome ...    51   7e-05
tr|A5C676|A5C676_VITVI Putative uncharacterized protein OS=Vitis...    51   7e-05
tr|B7FMF3|B7FMF3_MEDTR Putative uncharacterized protein OS=Medic...    50   9e-05
tr|A9TQX1|A9TQX1_PHYPA Predicted protein OS=Physcomitrella paten...    50   9e-05
tr|Q69Y53|Q69Y53_ORYSJ Os06g0193300 protein OS=Oryza sativa subs...    49   3e-04
tr|A3B979|A3B979_ORYSJ Putative uncharacterized protein OS=Oryza...    49   3e-04
tr|A2YA82|A2YA82_ORYSI Putative uncharacterized protein OS=Oryza...    49   3e-04
tr|Q94HC7|Q94HC7_ORYSJ Putative uncharacterized protein OSJNBb00...    47   0.001
tr|B8BGM6|B8BGM6_ORYSI Putative uncharacterized protein OS=Oryza...    47   0.001
tr|A9S8K3|A9S8K3_PHYPA Predicted protein OS=Physcomitrella paten...    46   0.002
tr|Q6K7E4|Q6K7E4_ORYSJ Putative uncharacterized protein OJ1311_D...    45   0.004
tr|Q0DX03|Q0DX03_ORYSJ Os02g0782900 protein OS=Oryza sativa subs...    45   0.004
tr|Q9LUL9|Q9LUL9_ARATH Genomic DNA, chromosome 3, P1 clone: MLN2...    42   0.023
tr|A3AC06|A3AC06_ORYSJ Putative uncharacterized protein OS=Oryza...    35   4.8  
tr|B6JBX5|B6JBX5_OLICO Negative regulator of AmpC, AmpD OS=Oligo...    34   8.2  
tr|A8TIW8|A8TIW8_9PROT Putative uncharacterized protein OS=alpha...    34   8.3  

>tr|A9SQE0|A9SQE0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_82514 PE=4 SV=1
          Length = 104

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 21/34 (61%), Positives = 27/34 (79%)
 Frame = +3

Query: 285 KIFADDSTGVVCYKNELGEMVCEGLDEGPHFYPQ 386
           ++F D+S G+VCY NE GE+ CEG DEGPHF P+
Sbjct: 19  QVFKDESNGIVCYVNEDGEITCEGWDEGPHFIPE 52


>tr|A9NNE4|A9NNE4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 141

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 19/33 (57%), Positives = 26/33 (78%)
 Frame = +3

Query: 276 DVFKIFADDSTGVVCYKNELGEMVCEGLDEGPH 374
           +  K++ D S G+VCY+NE GE++CEG DEGPH
Sbjct: 57  EAVKVYQDASRGIVCYRNEYGELICEGYDEGPH 89


>tr|A9TMJ3|A9TMJ3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170863 PE=4 SV=1
          Length = 153

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = +3

Query: 288 IFADDSTGVVCYKNELGEMVCEGLDEGPHFYP 383
           IF D+S G++CY +E G+++CEG DEGPHF P
Sbjct: 64  IFKDESQGIICYYDENGDLICEGWDEGPHFQP 95


>tr|B6UGC8|B6UGC8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 130

 Score = 51.2 bits (121), Expect = 5e-05
 Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
 Frame = +3

Query: 165 RTTPSCSLNYMGFPSRT----AQLSTRCHATTQ----SSTVADCGDVFKIFADDSTGVVC 320
           R +PS ++  M   SRT    A +ST   ++++    S +V+  G   K++ D   G++C
Sbjct: 10  RYSPSVAMVPMRKTSRTTMTRASISTDGCSSSEPKKKSHSVSFAGKANKVYEDKDMGILC 69

Query: 321 YKNELGEMVCEGLDEGP 371
           Y +E GE+VCEGLDEGP
Sbjct: 70  YTDENGELVCEGLDEGP 86


>tr|A7P6B3|A7P6B3_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034001001
           PE=4 SV=1
          Length = 105

 Score = 50.8 bits (120), Expect = 7e-05
 Identities = 20/39 (51%), Positives = 29/39 (74%)
 Frame = +3

Query: 285 KIFADDSTGVVCYKNELGEMVCEGLDEGPHFYPQLGFKD 401
           K+F D S G+VCY+++ GE+VCEG DEGP  + +L  K+
Sbjct: 25  KVFEDQSKGIVCYRDDKGEIVCEGYDEGPRLHHELQRKN 63


>tr|A5C676|A5C676_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043719 PE=4 SV=1
          Length = 133

 Score = 50.8 bits (120), Expect = 7e-05
 Identities = 20/39 (51%), Positives = 29/39 (74%)
 Frame = +3

Query: 285 KIFADDSTGVVCYKNELGEMVCEGLDEGPHFYPQLGFKD 401
           K+F D S G+VCY+++ GE+VCEG DEGP  + +L  K+
Sbjct: 53  KVFEDQSKGIVCYRDDKGEIVCEGYDEGPRLHHELQRKN 91


>tr|B7FMF3|B7FMF3_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 133

 Score = 50.4 bits (119), Expect = 9e-05
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 9/66 (13%)
 Frame = +3

Query: 207 SRTAQLSTRCHATTQSSTVADCGDVFKIFA---------DDSTGVVCYKNELGEMVCEGL 359
           S    +S RC+A  + STV     + KI A         D+S G++CY++E GE++CEG 
Sbjct: 24  SNNLLMSKRCYAPKKKSTVGPV--LLKITASIKNKVVYEDESQGIICYQDESGEIICEGY 81

Query: 360 DEGPHF 377
           DEGP +
Sbjct: 82  DEGPSY 87


>tr|A9TQX1|A9TQX1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171438 PE=4 SV=1
          Length = 153

 Score = 50.4 bits (119), Expect = 9e-05
 Identities = 18/32 (56%), Positives = 25/32 (78%)
 Frame = +3

Query: 288 IFADDSTGVVCYKNELGEMVCEGLDEGPHFYP 383
           +F D+S G++CY +E G++ CEG DEGPHF P
Sbjct: 64  VFKDESQGIICYYDENGDITCEGWDEGPHFQP 95


>tr|Q69Y53|Q69Y53_ORYSJ Os06g0193300 protein OS=Oryza sativa subsp.
           japonica GN=P0698A06.24 PE=2 SV=1
          Length = 127

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
 Frame = +3

Query: 207 SRTAQLSTRC--HATTQSS--TVADCGDVFKIFADDSTGVVCYKNELGEMVCEGLDEGP 371
           +R A L  R   H  T SS  ++A      K+F D   G+VCY+++ GEMVCEG DEGP
Sbjct: 21  TRKAALRFRAPAHGGTSSSQLSIAAATANKKVFEDQLRGIVCYRDDKGEMVCEGYDEGP 79


>tr|A3B979|A3B979_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019601 PE=4 SV=1
          Length = 133

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
 Frame = +3

Query: 207 SRTAQLSTRC--HATTQSS--TVADCGDVFKIFADDSTGVVCYKNELGEMVCEGLDEGP 371
           +R A L  R   H  T SS  ++A      K+F D   G+VCY+++ GEMVCEG DEGP
Sbjct: 21  TRKAALRFRAPAHGGTSSSQLSIAAATANKKVFEDQLRGIVCYRDDKGEMVCEGYDEGP 79