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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961277
Clone id TST39A01NGRL0009_K22
Library
Length 130
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_K22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTCTCTGCGAACGGGGTCCCGAGAAGTGGTCGCTTCGTCCCCAGCTTCTTTCGAGCTCCA
CCGGCGCCATGGTGAAATACTCCAGGGAGCCTGATAATATCACAAAAGCTTGTAAGTCTA
GAGGTTCTGA
■■Homology search results ■■ -
sp_hit_id Q93VI3
Definition sp|Q93VI3|RL171_ARATH 60S ribosomal protein L17-1 OS=Arabidopsis thaliana
Align length 20
Score (bit) 40.0
E-value 0.004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961277|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_K22, 5'
         (130 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q93VI3|RL171_ARATH 60S ribosomal protein L17-1 OS=Arabidopsis...    40   0.004
sp|P51413|RL172_ARATH 60S ribosomal protein L17-2 OS=Arabidopsis...    39   0.011
sp|A8CAG3|RL17_PHLPP 60S ribosomal protein L17 OS=Phlebotomus pa...    37   0.031
sp|P24049|RL17_RAT 60S ribosomal protein L17 OS=Rattus norvegicu...    35   0.15 
sp|Q9CPR4|RL17_MOUSE 60S ribosomal protein L17 OS=Mus musculus G...    35   0.15 
sp|P18621|RL17_HUMAN 60S ribosomal protein L17 OS=Homo sapiens G...    35   0.15 
sp|Q5XTY7|RL17_FELCA 60S ribosomal protein L17 OS=Felis silvestr...    35   0.15 
sp|Q3T025|RL17_BOVIN 60S ribosomal protein L17 OS=Bos taurus GN=...    35   0.15 
sp|Q5UAS2|RL17_BOMMO 60S ribosomal protein L17 OS=Bombyx mori GN...    34   0.20 
sp|A0NGY0|RL17_ANOGA 60S ribosomal protein L17 OS=Anopheles gamb...    34   0.20 
sp|Q4PM54|RL17_IXOSC 60S ribosomal protein L17 OS=Ixodes scapula...    34   0.26 
sp|Q29IM3|RL17_DROPS 60S ribosomal protein L17 OS=Drosophila pse...    34   0.26 
sp|Q09JW2|RL17_ARGMO 60S ribosomal protein L17 OS=Argas monolake...    34   0.26 
sp|Q9YH71|VNT1B_XENLA Homeobox protein vent1B OS=Xenopus laevis ...    33   0.44 
sp|Q4GXH6|RL17_BIPLU 60S ribosomal protein L17 OS=Biphyllus luna...    33   0.44 
sp|Q9BL19|RL17_CAEEL 60S ribosomal protein L17 OS=Caenorhabditis...    32   0.75 
sp|Q6XJ13|RL17_DROYA 60S ribosomal protein L17 OS=Drosophila yak...    32   0.99 
sp|Q9W3W8|RL17_DROME 60S ribosomal protein L17 OS=Drosophila mel...    32   0.99 
sp|Q0PXV9|RL17_DIACI 60S ribosomal protein L17 OS=Diaphorina cit...    32   0.99 
sp|Q5MIR6|RL17_AEDAL 60S ribosomal protein L17 OS=Aedes albopict...    32   0.99 
sp|Q1HR65|RL17_AEDAE 60S ribosomal protein L17 OS=Aedes aegypti ...    32   0.99 
sp|Q5MGD1|RL17_LONON 60S ribosomal protein L17 OS=Lonomia obliqu...    32   1.3  
sp|Q4GXH5|RL17_CARGR 60S ribosomal protein L17 OS=Carabus granul...    32   1.3  
sp|Q4N4B9|RL17_THEPA 60S ribosomal protein L17 OS=Theileria parv...    31   1.7  
sp|Q4UF75|RL17_THEAN 60S ribosomal protein L17 OS=Theileria annu...    31   1.7  
sp|Q4GXH7|RL17_AGRLI 60S ribosomal protein L17 OS=Agriotes linea...    30   3.7  
sp|P40714|CSCA_ECOLX Sucrose-6-phosphate hydrolase OS=Escherichi...    30   4.9  
sp|P37380|RL17_PODCA 60S ribosomal protein L17 OS=Podocoryne car...    29   6.4  
sp|P05087|PHAL_PHAVU Leucoagglutinating phytohemagglutinin OS=Ph...    29   8.3  

>sp|Q93VI3|RL171_ARATH 60S ribosomal protein L17-1 OS=Arabidopsis
           thaliana GN=RPL17A PE=1 SV=1
          Length = 176

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 16/20 (80%), Positives = 20/20 (100%)
 Frame = +3

Query: 69  MVKYSREPDNITKACKSRGS 128
           MVKYS+EPDNITK+CK+RG+
Sbjct: 1   MVKYSQEPDNITKSCKARGA 20


>sp|P51413|RL172_ARATH 60S ribosomal protein L17-2 OS=Arabidopsis
           thaliana GN=RPL17B PE=2 SV=2
          Length = 175

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 16/20 (80%), Positives = 19/20 (95%)
 Frame = +3

Query: 69  MVKYSREPDNITKACKSRGS 128
           MVKYS+EPDN TK+CK+RGS
Sbjct: 1   MVKYSQEPDNQTKSCKARGS 20


>sp|A8CAG3|RL17_PHLPP 60S ribosomal protein L17 OS=Phlebotomus
           papatasi GN=RpL17 PE=2 SV=1
          Length = 186

 Score = 37.0 bits (84), Expect = 0.031
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +3

Query: 69  MVKYSREPDNITKACKSRGS 128
           M +Y+REPDN TK+CKSRGS
Sbjct: 1   MGRYAREPDNATKSCKSRGS 20


>sp|P24049|RL17_RAT 60S ribosomal protein L17 OS=Rattus norvegicus
           GN=Rpl17 PE=2 SV=3
          Length = 184

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +3

Query: 69  MVKYSREPDNITKACKSRGS 128
           MV+YS +P+N TK+CKSRGS
Sbjct: 1   MVRYSLDPENPTKSCKSRGS 20


>sp|Q9CPR4|RL17_MOUSE 60S ribosomal protein L17 OS=Mus musculus
           GN=Rpl17 PE=2 SV=3
          Length = 184

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +3

Query: 69  MVKYSREPDNITKACKSRGS 128
           MV+YS +P+N TK+CKSRGS
Sbjct: 1   MVRYSLDPENPTKSCKSRGS 20


>sp|P18621|RL17_HUMAN 60S ribosomal protein L17 OS=Homo sapiens
           GN=RPL17 PE=1 SV=3
          Length = 184

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +3

Query: 69  MVKYSREPDNITKACKSRGS 128
           MV+YS +P+N TK+CKSRGS
Sbjct: 1   MVRYSLDPENPTKSCKSRGS 20


>sp|Q5XTY7|RL17_FELCA 60S ribosomal protein L17 OS=Felis silvestris
           catus GN=RPL17 PE=2 SV=3
          Length = 184

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +3

Query: 69  MVKYSREPDNITKACKSRGS 128
           MV+YS +P+N TK+CKSRGS
Sbjct: 1   MVRYSLDPENPTKSCKSRGS 20


>sp|Q3T025|RL17_BOVIN 60S ribosomal protein L17 OS=Bos taurus
           GN=RPL17 PE=2 SV=3
          Length = 184

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +3

Query: 69  MVKYSREPDNITKACKSRGS 128
           MV+YS +P+N TK+CKSRGS
Sbjct: 1   MVRYSLDPENPTKSCKSRGS 20


>sp|Q5UAS2|RL17_BOMMO 60S ribosomal protein L17 OS=Bombyx mori
           GN=RpL17 PE=2 SV=1
          Length = 187

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +3

Query: 69  MVKYSREPDNITKACKSRGS 128
           M +YSREPDN  K+CK+RGS
Sbjct: 1   MGRYSREPDNPAKSCKARGS 20


>sp|A0NGY0|RL17_ANOGA 60S ribosomal protein L17 OS=Anopheles gambiae
           GN=RpL17 PE=3 SV=1
          Length = 187

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 13/20 (65%), Positives = 18/20 (90%)
 Frame = +3

Query: 69  MVKYSREPDNITKACKSRGS 128
           M +Y++EPDN +K+CKSRGS
Sbjct: 1   MGRYAKEPDNASKSCKSRGS 20
tr_hit_id A7PHG3
Definition tr|A7PHG3|A7PHG3_VITVI Chromosome chr17 scaffold_16, whole genome shotgun sequence OS=Vitis vinifera
Align length 21
Score (bit) 41.6
E-value 0.02
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961277|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_K22, 5'
         (130 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PHG3|A7PHG3_VITVI Chromosome chr17 scaffold_16, whole genom...    42   0.020
tr|Q307X7|Q307X7_SOLTU Ribosomal protein PETRP-like OS=Solanum t...    41   0.026
tr|Q6RK02|Q6RK02_CAPAN Ribosomal protein PETRP OS=Capsicum annuu...    40   0.058
tr|A9PJV5|A9PJV5_POPJC Putative uncharacterized protein OS=Popul...    40   0.058
tr|A9PE02|A9PE02_POPTR Putative uncharacterized protein OS=Popul...    40   0.058
tr|A9PCW9|A9PCW9_POPTR Putative uncharacterized protein OS=Popul...    40   0.058
tr|A9PBU5|A9PBU5_POPTR Putative uncharacterized protein OS=Popul...    40   0.058
tr|A9PA96|A9PA96_POPTR Putative uncharacterized protein OS=Popul...    40   0.058
tr|A9NYW9|A9NYW9_PICSI Putative uncharacterized protein OS=Picea...    40   0.058
tr|A9NT14|A9NT14_PICSI Putative uncharacterized protein OS=Picea...    40   0.058
tr|A5B412|A5B412_VITVI Putative uncharacterized protein OS=Vitis...    40   0.058
tr|A9SN83|A9SN83_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.099
tr|A9TXV0|A9TXV0_PHYPA Predicted protein (Fragment) OS=Physcomit...    39   0.13 
tr|Q947H2|Q947H2_PETHY Ribosomal protein OS=Petunia hybrida GN=P...    39   0.17 
tr|Q0WRE5|Q0WRE5_ARATH Ribosomal protein L17-like protein OS=Ara...    39   0.17 
tr|A7QP85|A7QP85_VITVI Chromosome chr1 scaffold_136, whole genom...    38   0.22 
tr|A9SN82|A9SN82_PHYPA Predicted protein (Fragment) OS=Physcomit...    38   0.29 
tr|A9S035|A9S035_PHYPA Predicted protein (Fragment) OS=Physcomit...    37   0.37 
tr|A7QP86|A7QP86_VITVI Chromosome chr1 scaffold_136, whole genom...    37   0.64 
tr|A9RQX8|A9RQX8_PHYPA Predicted protein OS=Physcomitrella paten...    36   0.84 
tr|Q7ZY53|Q7ZY53_XENLA RPL17 protein (Fragment) OS=Xenopus laevi...    36   1.1  
tr|Q80V08|Q80V08_MOUSE Rpl17 protein (Fragment) OS=Mus musculus ...    35   1.4  
tr|B4N1G4|B4N1G4_DROWI GK16300 OS=Drosophila willistoni GN=GK163...    35   1.4  
tr|B4M6M3|B4M6M3_DROVI GJ16610 OS=Drosophila virilis GN=GJ16610 ...    35   1.4  
tr|B4LJ83|B4LJ83_DROVI GJ20274 OS=Drosophila virilis GN=GJ20274 ...    35   1.4  
tr|B4L275|B4L275_DROMO GI15202 OS=Drosophila mojavensis GN=GI152...    35   1.4  
tr|B4JKY7|B4JKY7_DROGR GH12755 OS=Drosophila grimshawi GN=GH1275...    35   1.4  
tr|Q9IA75|Q9IA75_PAROL Ribosomal protein L17 OS=Paralichthys oli...    35   2.4  
tr|Q7T1K0|Q7T1K0_DANRE Zgc:65996 OS=Danio rerio GN=zgc:65996 PE=...    35   2.4  
tr|Q563Y0|Q563Y0_TAEGU Putative ribosomal protein L17 variant 1 ...    35   2.4  

>tr|A7PHG3|A7PHG3_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017930001
           PE=3 SV=1
          Length = 216

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 18/21 (85%), Positives = 20/21 (95%)
 Frame = +3

Query: 66  AMVKYSREPDNITKACKSRGS 128
           AMVKYSREPDN TK+CK+RGS
Sbjct: 33  AMVKYSREPDNPTKSCKARGS 53


>tr|Q307X7|Q307X7_SOLTU Ribosomal protein PETRP-like OS=Solanum
           tuberosum PE=2 SV=1
          Length = 173

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 18/20 (90%), Positives = 19/20 (95%)
 Frame = +3

Query: 69  MVKYSREPDNITKACKSRGS 128
           MVKYSREPDN TK+CKSRGS
Sbjct: 1   MVKYSREPDNPTKSCKSRGS 20


>tr|Q6RK02|Q6RK02_CAPAN Ribosomal protein PETRP OS=Capsicum annuum
           PE=2 SV=1
          Length = 173

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +3

Query: 69  MVKYSREPDNITKACKSRGS 128
           MVKYSREPDN TK+CK+RGS
Sbjct: 1   MVKYSREPDNPTKSCKARGS 20


>tr|A9PJV5|A9PJV5_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 178

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +3

Query: 69  MVKYSREPDNITKACKSRGS 128
           MVKYSREPDN TK+CK+RGS
Sbjct: 1   MVKYSREPDNPTKSCKARGS 20


>tr|A9PE02|A9PE02_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 181

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +3

Query: 69  MVKYSREPDNITKACKSRGS 128
           MVKYSREPDN TK+CK+RGS
Sbjct: 1   MVKYSREPDNQTKSCKARGS 20


>tr|A9PCW9|A9PCW9_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 181

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +3

Query: 69  MVKYSREPDNITKACKSRGS 128
           MVKYSREPDN TK+CK+RGS
Sbjct: 1   MVKYSREPDNPTKSCKARGS 20


>tr|A9PBU5|A9PBU5_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 178

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +3

Query: 69  MVKYSREPDNITKACKSRGS 128
           MVKYSREPDN TK+CK+RGS
Sbjct: 1   MVKYSREPDNPTKSCKARGS 20


>tr|A9PA96|A9PA96_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 178

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +3

Query: 69  MVKYSREPDNITKACKSRGS 128
           MVKYSREPDN TK+CK+RGS
Sbjct: 1   MVKYSREPDNPTKSCKARGS 20


>tr|A9NYW9|A9NYW9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 183

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +3

Query: 69  MVKYSREPDNITKACKSRGS 128
           MVKYSREPDN TK+CK+RGS
Sbjct: 1   MVKYSREPDNPTKSCKARGS 20


>tr|A9NT14|A9NT14_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 183

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +3

Query: 69  MVKYSREPDNITKACKSRGS 128
           MVKYSREPDN TK+CK+RGS
Sbjct: 1   MVKYSREPDNPTKSCKARGS 20