DK961266 |
Clone id |
TST39A01NGRL0009_K09 |
Library |
TST39 |
Length |
670 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_K09. 5' end sequence. |
Accession |
DK961266 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
TCCAAGCTCAATCCAGCTCTCCTAACCTCCTCGAGTCTCTGTCTTTGTAATTGGCGCGCT TTTTCTTCTCTCGCCATCGCTGAACACAGTGCGAGGCTCGTTTCCTTTCCGCGTTCGTAT GCTCTCGGTTGTCGAAGAACTCATTTGAGCTGCTGAACCTGAAACTTTGGTTCTCTAGAG TTCGCTCGCCTCCTGTCCTTTCCATTCTTTGTCGCGTACAAGCACACGCGCAGACAGGCG CGGATGCTGCACACGTTTGGCTGCTTACACACCAAATCTGCGCCTGCCCATCCCCTTTTC GATTGGGCTGGGGGGAAGGGCAGCAACGCTATTGGTTGCTCGGTGCTTTCGACGAATCAG GTGCAGAGCCCATAGCCCGCCCGTTGATGGACAGGCAGTCCCGACTGCCCAAGCCCTTGT CCACTGTCCGAGAACGCTACCAATCAGTCTGCGCCTTCTGTCATCCACGCAGACACGCGC ACCTGTTGCCCAATTTTGGGCAATCTTCTGTGCCTCCCGTGAGTTTCGTCCAGTGCTTTT GGTCTCGTGTTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACAC ACACACACACACACACACACACTTCTGTCGCTGGCGCTCTCACCGACGGACTTCTGCATT TGAGCGCAAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P23588 |
Definition |
sp|P23588|IF4B_HUMAN Eukaryotic translation initiation factor 4B OS=Homo sapiens |
Align length |
58 |
Score (bit) |
33.5 |
E-value |
1.0 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RI33 |
Definition |
tr|A9RI33|A9RI33_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
80 |
Score (bit) |
38.1 |
E-value |
0.5 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961266|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0009_K09, 5' (670 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RI33|A9RI33_PHYPA Predicted protein (Fragment) OS=Physcomit... 38 0.50 tr|Q4QC46|Q4QC46_LEIMA Putative uncharacterized protein OS=Leish... 38 0.50 tr|Q1NYF3|Q1NYF3_9DELT CoA enzyme activase OS=delta proteobacter... 37 1.1 tr|Q1NK68|Q1NK68_9DELT (R)-2-hydroxyglutaryl-CoA dehydratase act... 37 1.1 tr|B6MLC6|B6MLC6_BRAFL Putative uncharacterized protein OS=Branc... 35 5.6 tr|Q6N4L8|Q6N4L8_RHOPA Putative uncharacterized protein OS=Rhodo... 34 7.2 tr|A9SFE1|A9SFE1_PHYPA Predicted protein (Fragment) OS=Physcomit... 34 7.2 tr|A3A6N5|A3A6N5_ORYSJ Putative uncharacterized protein OS=Oryza... 34 7.3 tr|B6KTR5|B6KTR5_TOXGO RIO1 family domain-containing protein OS=... 34 7.3 tr|A5ARJ1|A5ARJ1_VITVI Putative uncharacterized protein OS=Vitis... 34 9.4 tr|B3L2L3|B3L2L3_PLAKH Dolichyl-diphosphooligosaccharide--protei... 29 10.0
>tr|A9RI33|A9RI33_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_53176 PE=4 SV=1 Length = 140
Score = 38.1 bits (87), Expect = 0.50 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Frame = +3
Query: 264 LTHQICACPSPFRLGWGEGQQRYWLL-GAFDESGAEPIARPLMDRQSRLPKPLSTVRERY 440 L H CP P R WG L AF+E+G +P + P RQ RL L VRE Sbjct: 62 LPHPPHPCPCPLRQAWGSLDALIGRLRAAFEENGGKPESNPFGARQVRL--YLREVREMQ 119
Query: 441 QSVCAFCHPRRHAHLLPNFG 500 + ++ +PN G Sbjct: 120 AKARGIAYEKKKRKRMPNAG 139
>tr|Q4QC46|Q4QC46_LEIMA Putative uncharacterized protein OS=Leishmania major GN=LmjF21.1490 PE=4 SV=1 Length = 670
Score = 38.1 bits (87), Expect = 0.50 Identities = 21/68 (30%), Positives = 29/68 (42%) Frame = +1
Query: 247 LHTFGCLHTKSAPAHPLFDWAGGKGSNAIGCSVLSTNQVQSP*PAR*WTGSPDCPSPCPL 426 LHT G T P H D GG + +G S Q P PA+ +G P P+P Sbjct: 554 LHTAGASSTPGPPPHSAADGGGGVLAAVVGLSSPPQQPQQQPQPAKPLSGGPHLPAPAST 613
Query: 427 SENATNQS 450 ++ Q+ Sbjct: 614 RSMSSKQT 621
>tr|Q1NYF3|Q1NYF3_9DELT CoA enzyme activase OS=delta proteobacterium MLMS-1 GN=MldDRAFT_1562 PE=3 SV=1 Length = 1454
Score = 37.0 bits (84), Expect = 1.1 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 4/88 (4%) Frame = +2
Query: 272 PNLRLPIPFSIGLGGRAATLLVARCFRRIRCRAHS-PPVDGQAVPTAQALVHCPRTLPIS 448 P +R+ +P GR T LVA+ F R RA + PP D QA+ + C LP+ Sbjct: 1037 PRVRVVLPAM----GRFGTALVAKAFARKGIRAEALPPADEQALKLGRGNSSCKECLPLQ 1092
Query: 449 L---RLLSSTQTRAPVAQFWAIFCASRE 523 +L+ Q + P + A F A+ E Sbjct: 1093 TTVGTMLAYFQQQRPQDEITAYFMATTE 1120
>tr|Q1NK68|Q1NK68_9DELT (R)-2-hydroxyglutaryl-CoA dehydratase activator-related protein (Fragment) OS=delta proteobacterium MLMS-1 GN=MldDRAFT_2590 PE=4 SV=1 Length = 445
Score = 37.0 bits (84), Expect = 1.1 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 4/88 (4%) Frame = +2
Query: 272 PNLRLPIPFSIGLGGRAATLLVARCFRRIRCRAHS-PPVDGQAVPTAQALVHCPRTLPIS 448 P +R+ +P GR T LVA+ F R RA + PP D QA+ + C LP+ Sbjct: 28 PRVRVVLPAM----GRFGTALVAKAFARKGIRAEALPPADEQALKLGRGNSSCKECLPLQ 83
Query: 449 L---RLLSSTQTRAPVAQFWAIFCASRE 523 +L+ Q + P + A F A+ E Sbjct: 84 TTVGTMLAYFQQQRPQDEITAYFMATTE 111
>tr|B6MLC6|B6MLC6_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_83860 PE=4 SV=1 Length = 379
Score = 34.7 bits (78), Expect = 5.6 Identities = 28/78 (35%), Positives = 36/78 (46%) Frame = +2
Query: 260 AAYTPNLRLPIPFSIGLGGRAATLLVARCFRRIRCRAHSPPVDGQAVPTAQALVHCPRTL 439 AA P RLP P AAT VAR +R + PV PTA+ + H P T Sbjct: 54 AATAPVARLPDP--------AATAPVAR----LRDPTAAAPVARLQDPTARLVAHVPHTT 101
Query: 440 PISLRLLSSTQTRAPVAQ 493 P++ R + T APV + Sbjct: 102 PVTRRQDPAIATPAPVTR 119
>tr|Q6N4L8|Q6N4L8_RHOPA Putative uncharacterized protein OS=Rhodopseudomonas palustris GN=RPA3319 PE=4 SV=1 Length = 139
Score = 34.3 bits (77), Expect = 7.2 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 15/80 (18%) Frame = +3
Query: 312 GEGQQRYWLLGAFDESGAEPIARPLMDRQ---------------SRLPKPLSTVRERYQS 446 G +QR+ G E G+ RP D+Q S+ P P+ + + Sbjct: 51 GTSEQRWRFTGHIPERGSARPGRPQSDQQIGPCGTVHSPLLLLRSQSPLPVGGAKHGQLT 110
Query: 447 VCAFCHPRRHAHLLPNFGQS 506 V + CHPRR LP QS Sbjct: 111 VRSLCHPRRDMRWLPRRPQS 130
>tr|A9SFE1|A9SFE1_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_48282 PE=4 SV=1 Length = 142
Score = 34.3 bits (77), Expect = 7.2 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Frame = +3
Query: 264 LTHQICACPSPFRLGWGEGQQRYWLL-GAFDESGAEPIARPLMDRQSRLPKPLSTVRERY 440 L H CP P R WG L AF+E+G +P + P RQ RL L VRE Sbjct: 61 LPHPPHPCPCPLRQAWGSLDALIGRLRAAFEENGGKPESNPFGARQVRL--YLREVREMQ 118
Query: 441 QSVCAFCHPRRHAHLLP 491 + ++ +P Sbjct: 119 AKARGIAYEKKKRKRIP 135
>tr|A3A6N5|A3A6N5_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_006457 PE=4 SV=1 Length = 494
Score = 34.3 bits (77), Expect = 7.3 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 11/172 (6%) Frame = -2
Query: 531 GRNSREAQKIAQN---WATGARVCVDDRRRRLIGSVLGQWTRAWAVGTACPSTGGLW--A 367 G ++E +K A + W+ G R + RR +G V + AW + G W A Sbjct: 236 GWTTKEREKAAASRGSWSVGRRRWRRGKWRRGLGGVGRRTEEAW-IPLQAGQGGRRWQGA 294
Query: 366 LHLIRRKHRATNSVAALPPSPIEKG-MGRRRFGV*AAKRVQHPRLSARVLVRDKEWKG-- 196 + + + V A + EK GRRR + R L +R L +W+ Sbjct: 295 MATVVGGRAMRDGVWAEWAADAEKKEWGRRR-----SIRATTMCLKSRELKDQPKWRRVL 349
Query: 195 QEASEL*RTKVSGSAAQMSSS---TTESIRTRKGNEPRTVFSDGERRKSAPI 49 +E S+ RTK+S S A SSS T E R +K N + +G+++ A + Sbjct: 350 EEDSKNKRTKISESGAYTSSSNQDTEEENRRKKENRRKKKRPEGQKKAKAKL 401
>tr|B6KTR5|B6KTR5_TOXGO RIO1 family domain-containing protein OS=Toxoplasma gondii ME49 GN=TGME49_010830 PE=4 SV=1 Length = 1015
Score = 34.3 bits (77), Expect = 7.3 Identities = 16/37 (43%), Positives = 25/37 (67%) Frame = -2
Query: 162 SGSAAQMSSSTTESIRTRKGNEPRTVFSDGERRKSAP 52 S S++ SSS++ S T+KG+ R + S GERR++ P Sbjct: 29 SSSSSSSSSSSSSSFATQKGDAGRLLRSSGERRRAEP 65
>tr|A5ARJ1|A5ARJ1_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036348 PE=4 SV=1 Length = 177
Score = 33.9 bits (76), Expect = 9.4 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Frame = +3
Query: 285 CPSPFRLGWGEGQQRYWLL-GAFDESGAEPIARPLMDRQSRLPKPLSTVRERYQSVCAFC 461 CP P R WG L AF+E+G +P A P R RL L VR+ Sbjct: 97 CPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRL--YLREVRDLQSKARGIS 154
Query: 462 HPRRHAHLLPNFGQSSVPP 518 + ++ LP +PP Sbjct: 155 YEKKKRKRLPQQMPPQLPP 173
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