DK961266
Clone id TST39A01NGRL0009_K09
Library
Length 670
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_K09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
TCCAAGCTCAATCCAGCTCTCCTAACCTCCTCGAGTCTCTGTCTTTGTAATTGGCGCGCT
TTTTCTTCTCTCGCCATCGCTGAACACAGTGCGAGGCTCGTTTCCTTTCCGCGTTCGTAT
GCTCTCGGTTGTCGAAGAACTCATTTGAGCTGCTGAACCTGAAACTTTGGTTCTCTAGAG
TTCGCTCGCCTCCTGTCCTTTCCATTCTTTGTCGCGTACAAGCACACGCGCAGACAGGCG
CGGATGCTGCACACGTTTGGCTGCTTACACACCAAATCTGCGCCTGCCCATCCCCTTTTC
GATTGGGCTGGGGGGAAGGGCAGCAACGCTATTGGTTGCTCGGTGCTTTCGACGAATCAG
GTGCAGAGCCCATAGCCCGCCCGTTGATGGACAGGCAGTCCCGACTGCCCAAGCCCTTGT
CCACTGTCCGAGAACGCTACCAATCAGTCTGCGCCTTCTGTCATCCACGCAGACACGCGC
ACCTGTTGCCCAATTTTGGGCAATCTTCTGTGCCTCCCGTGAGTTTCGTCCAGTGCTTTT
GGTCTCGTGTTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACAC
ACACACACACACACACACACACTTCTGTCGCTGGCGCTCTCACCGACGGACTTCTGCATT
TGAGCGCAAT
■■Homology search results ■■ -
sp_hit_id P23588
Definition sp|P23588|IF4B_HUMAN Eukaryotic translation initiation factor 4B OS=Homo sapiens
Align length 58
Score (bit) 33.5
E-value 1.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961266|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_K09, 5'
(670 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P23588|IF4B_HUMAN Eukaryotic translation initiation factor 4B... 33 1.0
sp|Q6F817|SYL_ACIAD Leucyl-tRNA synthetase OS=Acinetobacter sp. ... 32 2.3
sp|Q8BGD9|IF4B_MOUSE Eukaryotic translation initiation factor 4B... 32 3.0
sp|Q5S7W5|NTAL_CHICK Linker for activation of T-cells family mem... 32 3.0
sp|Q96JK2|WDR22_HUMAN WD repeat-containing protein 22 OS=Homo sa... 32 4.0
sp|Q31DD4|COAE_PROM9 Dephospho-CoA kinase OS=Prochlorococcus mar... 31 6.8
sp|P51019|XYLK_PSEPU 4-hydroxy-2-oxovalerate aldolase OS=Pseudom... 31 6.8
sp|O13157|GFRA2_CHICK GDNF family receptor alpha-2 OS=Gallus gal... 31 6.8
sp|P51016|DMPG_PSEUF 4-hydroxy-2-oxovalerate aldolase OS=Pseudom... 31 6.8
sp|Q9R244|TRPC2_MOUSE Short transient receptor potential channel... 30 8.8
sp|Q5R8W6|CROP_PONAB Cisplatin resistance-associated overexpress... 30 8.8
sp|Q5SUF2|CROP_MOUSE Cisplatin resistance-associated overexpress... 30 8.8
sp|O95232|CROP_HUMAN Cisplatin resistance-associated overexpress... 30 8.8
sp|Q3SX41|CROP_BOVIN Cisplatin resistance-associated overexpress... 30 8.8
sp|P37972|CNRA_RALME Nickel and cobalt resistance protein cnrA O... 30 8.8
sp|P25307|BLT4_HORVU Protein BLT4 OS=Hordeum vulgare GN=BLT4 PE=... 30 8.8
sp|Q9S152|MHPE_COMTE 4-hydroxy-2-oxovalerate aldolase OS=Comamon... 30 8.9
sp|A4JPX7|MHPE_BURVG 4-hydroxy-2-oxovalerate aldolase OS=Burkhol... 30 8.9

>sp|P23588|IF4B_HUMAN Eukaryotic translation initiation factor 4B
OS=Homo sapiens GN=EIF4B PE=1 SV=2
Length = 611

Score = 33.5 bits (75), Expect = 1.0
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = -2

Query: 258 KRVQHPRLSARVLVRDKEWKGQEASEL*RTKVSGSAAQMSSSTTESIRTRKGNEPRTV 85
+++ P+L R R W+ +E E R++ ++Q +STT S R+ +++
Sbjct: 389 RQLDEPKLERRPRERHPSWRSEETQERERSRTGSESSQTGTSTTSSRNARRRESEKSL 446


>sp|Q6F817|SYL_ACIAD Leucyl-tRNA synthetase OS=Acinetobacter sp.
(strain ADP1) GN=leuS PE=3 SV=1
Length = 873

Score = 32.3 bits (72), Expect = 2.3
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 14/85 (16%)
Frame = +3

Query: 297 FRL-GWGEGQQRYW----LLGAFDESGAEPIAR---PLMDRQSRLP----KPLSTVRERY 440
FRL WG +QRYW + D G P+ P++ +P PL+ + E Y
Sbjct: 429 FRLRDWGVSRQRYWGCPIPMINCDSCGQVPVPEEQLPVVLPTDVVPDGSGNPLNKMPEFY 488

Query: 441 QSVCAFC--HPRRHAHLLPNFGQSS 509
++ C C H RR L F +SS
Sbjct: 489 ETTCPSCGGHARRETDTLDTFVESS 513


>sp|Q8BGD9|IF4B_MOUSE Eukaryotic translation initiation factor 4B
OS=Mus musculus GN=Eif4b PE=1 SV=1
Length = 611

Score = 32.0 bits (71), Expect = 3.0
Identities = 13/58 (22%), Positives = 28/58 (48%)
Frame = -2

Query: 258 KRVQHPRLSARVLVRDKEWKGQEASEL*RTKVSGSAAQMSSSTTESIRTRKGNEPRTV 85
+++ P+L R R W+ +E E R++ ++Q +S T TR+ +++
Sbjct: 389 RQLDEPKLDRRPRERHPSWRSEETQERERSRTGSESSQTGASATSGRNTRRRESEKSL 446


>sp|Q5S7W5|NTAL_CHICK Linker for activation of T-cells family member
2 OS=Gallus gallus GN=LAT2 PE=1 SV=1
Length = 198

Score = 32.0 bits (71), Expect = 3.0
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = -3

Query: 308 AQSKRGWAGADLVCKQPNVCSIRACLRVCLYATKNGKDRRRANSREPKFQVQQLK*VLRQ 129
AQ + WA A L+ ++ AC+R LYATK GKD + + E + + ++
Sbjct: 2 AQPELLWAAAGLMLLG---VAVSACVRCQLYATKRGKDGSQGSRLERPQRFEVIRSCSAV 58

Query: 128 PRAYERGKE 102
R ER KE
Sbjct: 59 TRRPERIKE 67


>sp|Q96JK2|WDR22_HUMAN WD repeat-containing protein 22 OS=Homo
sapiens GN=WDR22 PE=1 SV=2
Length = 942

Score = 31.6 bits (70), Expect = 4.0
Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 17/136 (12%)
Frame = -2

Query: 369 ALHLIRRKHRATNSVAALPPSPIEKGMGRRRFGV*AAKRVQHPRLSARVLVRDKEWKGQE 190
A HL + TN+VA+ PP+P + R+ + A +R Q RL A D E E
Sbjct: 480 AFHLGPLRVTTTNTVASTPPTPTCEDAASRQQRLSALRRYQDKRLLALSNESDSEENVCE 539

Query: 189 A-----------SEL*RTKVSGSAAQMSSSTTESIRTRKGNE------PRTVFSDGERRK 61
S + S S++ SS E + R+ + R + E +
Sbjct: 540 VELDTDLFPRPRSPSPEDESSSSSSSSSSEDEEELNERRASTWQRNAMRRRQKTTREDKP 599

Query: 60 SAPITKTETRGG*ESW 13
SAPI T T G +++
Sbjct: 600 SAPIKPTNTYIGEDNY 615


>sp|Q31DD4|COAE_PROM9 Dephospho-CoA kinase OS=Prochlorococcus
marinus (strain MIT 9312) GN=coaE PE=3 SV=1
Length = 205

Score = 30.8 bits (68), Expect = 6.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1

Query: 217 TRQRMERTGGERTLENQSFRFSSSNEFFDNREHTNAERKRASHCVQ 80
T+ E+ + L N F+ S S E+ DN H + K C+Q
Sbjct: 71 TKNNSEKAINRKLLRNIIFKHSESKEWIDNLLHPLVKEKMIEECIQ 116


>sp|P51019|XYLK_PSEPU 4-hydroxy-2-oxovalerate aldolase
OS=Pseudomonas putida GN=xylK PE=4 SV=1
Length = 345

Score = 30.8 bits (68), Expect = 6.8
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3

Query: 300 RLGWGEGQQRYWLLGAFDESGAEPIARPLMDRQSRLPK 413
RLGW G Y L+ A D+ I RPL DR R+ +
Sbjct: 248 RLGWNHGTDLYTLMDAADD-----IVRPLQDRPVRVDR 280


>sp|O13157|GFRA2_CHICK GDNF family receptor alpha-2 OS=Gallus gallus
GN=GFRA2 PE=2 SV=1
Length = 465

Score = 30.8 bits (68), Expect = 6.8
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Frame = -3

Query: 356 FVESTEQPIALLPFPPAQSKRGW------AGADLVCKQPNVCSIR-ACLRVCLYATKNGK 198
FV+ T + +A P PP Q +GW A+ +C CS R LR CL G+
Sbjct: 12 FVDETLRSLAAPPSPPGQDLQGWRVPVDCIRANKLCAAEGSCSSRYRTLRQCL----AGR 67

Query: 197 DR 192
DR
Sbjct: 68 DR 69


>sp|P51016|DMPG_PSEUF 4-hydroxy-2-oxovalerate aldolase
OS=Pseudomonas sp. (strain CF600) GN=dmpG PE=1 SV=1
Length = 345

Score = 30.8 bits (68), Expect = 6.8
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3

Query: 300 RLGWGEGQQRYWLLGAFDESGAEPIARPLMDRQSRLPK 413
RLGW G Y L+ A D+ I RPL DR R+ +
Sbjct: 248 RLGWNHGTDLYTLMDAADD-----IVRPLQDRPVRVDR 280


>sp|Q9R244|TRPC2_MOUSE Short transient receptor potential channel 2
OS=Mus musculus GN=Trpc2 PE=2 SV=1
Length = 1172

Score = 30.4 bits (67), Expect = 8.8
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Frame = +2

Query: 257 LAAYTPNLRLPIPFSIGLGGRAATLLVARCFRRIRC--------RAHSPPVDGQAVPTAQ 412
L+ + L LP+PF+I +AA LV R FR + C ++ PP+ P A+
Sbjct: 944 LSYFREGLTLPVPFNILPSPKAAFYLVRRIFRFLCCGSSCCKAKKSDYPPIGTFTNPGAR 1003

Query: 413 A 415
A
Sbjct: 1004 A 1004


tr_hit_id A9RI33
Definition tr|A9RI33|A9RI33_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 80
Score (bit) 38.1
E-value 0.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961266|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_K09, 5'
(670 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9RI33|A9RI33_PHYPA Predicted protein (Fragment) OS=Physcomit... 38 0.50
tr|Q4QC46|Q4QC46_LEIMA Putative uncharacterized protein OS=Leish... 38 0.50
tr|Q1NYF3|Q1NYF3_9DELT CoA enzyme activase OS=delta proteobacter... 37 1.1
tr|Q1NK68|Q1NK68_9DELT (R)-2-hydroxyglutaryl-CoA dehydratase act... 37 1.1
tr|B6MLC6|B6MLC6_BRAFL Putative uncharacterized protein OS=Branc... 35 5.6
tr|Q6N4L8|Q6N4L8_RHOPA Putative uncharacterized protein OS=Rhodo... 34 7.2
tr|A9SFE1|A9SFE1_PHYPA Predicted protein (Fragment) OS=Physcomit... 34 7.2
tr|A3A6N5|A3A6N5_ORYSJ Putative uncharacterized protein OS=Oryza... 34 7.3
tr|B6KTR5|B6KTR5_TOXGO RIO1 family domain-containing protein OS=... 34 7.3
tr|A5ARJ1|A5ARJ1_VITVI Putative uncharacterized protein OS=Vitis... 34 9.4
tr|B3L2L3|B3L2L3_PLAKH Dolichyl-diphosphooligosaccharide--protei... 29 10.0

>tr|A9RI33|A9RI33_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_53176 PE=4 SV=1
Length = 140

Score = 38.1 bits (87), Expect = 0.50
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +3

Query: 264 LTHQICACPSPFRLGWGEGQQRYWLL-GAFDESGAEPIARPLMDRQSRLPKPLSTVRERY 440
L H CP P R WG L AF+E+G +P + P RQ RL L VRE
Sbjct: 62 LPHPPHPCPCPLRQAWGSLDALIGRLRAAFEENGGKPESNPFGARQVRL--YLREVREMQ 119

Query: 441 QSVCAFCHPRRHAHLLPNFG 500
+ ++ +PN G
Sbjct: 120 AKARGIAYEKKKRKRMPNAG 139


>tr|Q4QC46|Q4QC46_LEIMA Putative uncharacterized protein
OS=Leishmania major GN=LmjF21.1490 PE=4 SV=1
Length = 670

Score = 38.1 bits (87), Expect = 0.50
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +1

Query: 247 LHTFGCLHTKSAPAHPLFDWAGGKGSNAIGCSVLSTNQVQSP*PAR*WTGSPDCPSPCPL 426
LHT G T P H D GG + +G S Q P PA+ +G P P+P
Sbjct: 554 LHTAGASSTPGPPPHSAADGGGGVLAAVVGLSSPPQQPQQQPQPAKPLSGGPHLPAPAST 613

Query: 427 SENATNQS 450
++ Q+
Sbjct: 614 RSMSSKQT 621


>tr|Q1NYF3|Q1NYF3_9DELT CoA enzyme activase OS=delta proteobacterium
MLMS-1 GN=MldDRAFT_1562 PE=3 SV=1
Length = 1454

Score = 37.0 bits (84), Expect = 1.1
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Frame = +2

Query: 272 PNLRLPIPFSIGLGGRAATLLVARCFRRIRCRAHS-PPVDGQAVPTAQALVHCPRTLPIS 448
P +R+ +P GR T LVA+ F R RA + PP D QA+ + C LP+
Sbjct: 1037 PRVRVVLPAM----GRFGTALVAKAFARKGIRAEALPPADEQALKLGRGNSSCKECLPLQ 1092

Query: 449 L---RLLSSTQTRAPVAQFWAIFCASRE 523
+L+ Q + P + A F A+ E
Sbjct: 1093 TTVGTMLAYFQQQRPQDEITAYFMATTE 1120


>tr|Q1NK68|Q1NK68_9DELT (R)-2-hydroxyglutaryl-CoA dehydratase
activator-related protein (Fragment) OS=delta
proteobacterium MLMS-1 GN=MldDRAFT_2590 PE=4 SV=1
Length = 445

Score = 37.0 bits (84), Expect = 1.1
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Frame = +2

Query: 272 PNLRLPIPFSIGLGGRAATLLVARCFRRIRCRAHS-PPVDGQAVPTAQALVHCPRTLPIS 448
P +R+ +P GR T LVA+ F R RA + PP D QA+ + C LP+
Sbjct: 28 PRVRVVLPAM----GRFGTALVAKAFARKGIRAEALPPADEQALKLGRGNSSCKECLPLQ 83

Query: 449 L---RLLSSTQTRAPVAQFWAIFCASRE 523
+L+ Q + P + A F A+ E
Sbjct: 84 TTVGTMLAYFQQQRPQDEITAYFMATTE 111


>tr|B6MLC6|B6MLC6_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_83860 PE=4 SV=1
Length = 379

Score = 34.7 bits (78), Expect = 5.6
Identities = 28/78 (35%), Positives = 36/78 (46%)
Frame = +2

Query: 260 AAYTPNLRLPIPFSIGLGGRAATLLVARCFRRIRCRAHSPPVDGQAVPTAQALVHCPRTL 439
AA P RLP P AAT VAR +R + PV PTA+ + H P T
Sbjct: 54 AATAPVARLPDP--------AATAPVAR----LRDPTAAAPVARLQDPTARLVAHVPHTT 101

Query: 440 PISLRLLSSTQTRAPVAQ 493
P++ R + T APV +
Sbjct: 102 PVTRRQDPAIATPAPVTR 119


>tr|Q6N4L8|Q6N4L8_RHOPA Putative uncharacterized protein
OS=Rhodopseudomonas palustris GN=RPA3319 PE=4 SV=1
Length = 139

Score = 34.3 bits (77), Expect = 7.2
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 15/80 (18%)
Frame = +3

Query: 312 GEGQQRYWLLGAFDESGAEPIARPLMDRQ---------------SRLPKPLSTVRERYQS 446
G +QR+ G E G+ RP D+Q S+ P P+ + +
Sbjct: 51 GTSEQRWRFTGHIPERGSARPGRPQSDQQIGPCGTVHSPLLLLRSQSPLPVGGAKHGQLT 110

Query: 447 VCAFCHPRRHAHLLPNFGQS 506
V + CHPRR LP QS
Sbjct: 111 VRSLCHPRRDMRWLPRRPQS 130


>tr|A9SFE1|A9SFE1_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_48282 PE=4 SV=1
Length = 142

Score = 34.3 bits (77), Expect = 7.2
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +3

Query: 264 LTHQICACPSPFRLGWGEGQQRYWLL-GAFDESGAEPIARPLMDRQSRLPKPLSTVRERY 440
L H CP P R WG L AF+E+G +P + P RQ RL L VRE
Sbjct: 61 LPHPPHPCPCPLRQAWGSLDALIGRLRAAFEENGGKPESNPFGARQVRL--YLREVREMQ 118

Query: 441 QSVCAFCHPRRHAHLLP 491
+ ++ +P
Sbjct: 119 AKARGIAYEKKKRKRIP 135


>tr|A3A6N5|A3A6N5_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_006457 PE=4 SV=1
Length = 494

Score = 34.3 bits (77), Expect = 7.3
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 11/172 (6%)
Frame = -2

Query: 531 GRNSREAQKIAQN---WATGARVCVDDRRRRLIGSVLGQWTRAWAVGTACPSTGGLW--A 367
G ++E +K A + W+ G R + RR +G V + AW + G W A
Sbjct: 236 GWTTKEREKAAASRGSWSVGRRRWRRGKWRRGLGGVGRRTEEAW-IPLQAGQGGRRWQGA 294

Query: 366 LHLIRRKHRATNSVAALPPSPIEKG-MGRRRFGV*AAKRVQHPRLSARVLVRDKEWKG-- 196
+ + + V A + EK GRRR + R L +R L +W+
Sbjct: 295 MATVVGGRAMRDGVWAEWAADAEKKEWGRRR-----SIRATTMCLKSRELKDQPKWRRVL 349

Query: 195 QEASEL*RTKVSGSAAQMSSS---TTESIRTRKGNEPRTVFSDGERRKSAPI 49
+E S+ RTK+S S A SSS T E R +K N + +G+++ A +
Sbjct: 350 EEDSKNKRTKISESGAYTSSSNQDTEEENRRKKENRRKKKRPEGQKKAKAKL 401


>tr|B6KTR5|B6KTR5_TOXGO RIO1 family domain-containing protein
OS=Toxoplasma gondii ME49 GN=TGME49_010830 PE=4 SV=1
Length = 1015

Score = 34.3 bits (77), Expect = 7.3
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = -2

Query: 162 SGSAAQMSSSTTESIRTRKGNEPRTVFSDGERRKSAP 52
S S++ SSS++ S T+KG+ R + S GERR++ P
Sbjct: 29 SSSSSSSSSSSSSSFATQKGDAGRLLRSSGERRRAEP 65


>tr|A5ARJ1|A5ARJ1_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_036348 PE=4 SV=1
Length = 177

Score = 33.9 bits (76), Expect = 9.4
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +3

Query: 285 CPSPFRLGWGEGQQRYWLL-GAFDESGAEPIARPLMDRQSRLPKPLSTVRERYQSVCAFC 461
CP P R WG L AF+E+G +P A P R RL L VR+
Sbjct: 97 CPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRL--YLREVRDLQSKARGIS 154

Query: 462 HPRRHAHLLPNFGQSSVPP 518
+ ++ LP +PP
Sbjct: 155 YEKKKRKRLPQQMPPQLPP 173