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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961233
Clone id TST39A01NGRL0009_I22
Library
Length 677
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_I22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GAAGGAGACAGCGAGAGAGAAGTCCTTGCGATCCCGACCTGCGGTTTTGTGCAGTGGACG
CGACGTCTCTTCTCTAGAATCCCCTCGTCTGCTTCTCCTCTGTGGAAGCAAGCTGCCTCA
AATCCATCGCTTGTCATCTTTGAGTGCCCATCAAGGCACCCTTTGTTCCAACCAGATGTC
GTGCTCCTGCATCTCAATATATTGCTGCCAGCGTTGGATTCCATCGGCTGTGAGGATCGA
GGGCTTGAAGGTACTTTGATGGTGATTTCTGCAGGTGGGCGCCTCACAAGTTGCAGATCT
TTGCCGTGTCGATATATCCAGGCAGCACTGCAAGTAGTACTAGCATGCGCACTTTACTTA
TGTTACCATTTTGATGTAGATAATGTGAATGAAGGTCACACTAATGACACCAGTTTTTGA
TGTGTTCGACGCATAGAAGAGCGCATGTGTGATTTGTGATCTAGTTTGTTAGGGCTCCTC
AAATGGGTTCCAGCAGAGACAGATCGATAGGTAGTTCAGAGCAACAGGTAGAAGTCATAA
ACCATCGGAAGAGGGGCGCTACTTCTTCCAGCATTTGGGATAACCTGCCGCAAGAGCTCG
CCGATNAGGTGTTTTCTCTGCTTCCAGTAGCATCAATATTCCGATGTCGTTGTGTTTGCA
AAAAATGGCTGCAAGTC
■■Homology search results ■■ -
sp_hit_id Q9FZK1
Definition sp|Q9FZK1|FBX6_ARATH F-box only protein 6 OS=Arabidopsis thaliana
Align length 67
Score (bit) 48.1
E-value 4.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961233|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_I22, 5'
         (677 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FZK1|FBX6_ARATH F-box only protein 6 OS=Arabidopsis thalian...    48   4e-05
sp|Q9SXA0|FB42_ARATH Putative F-box protein At1g47730 OS=Arabido...    40   0.009
sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis...    40   0.015
sp|Q9M310|FBK77_ARATH F-box/Kelch-repeat protein At3g61590 OS=Ar...    40   0.015
sp|Q9LFV5|FK111_ARATH F-box/Kelch-repeat protein At5g15710 OS=Ar...    38   0.056
sp|Q9LQL5|FB30_ARATH Putative F-box protein At1g32420 OS=Arabido...    38   0.056
sp|Q9LNF6|FB48_ARATH F-box protein At1g48060 OS=Arabidopsis thal...    36   0.16 
sp|Q5BPS3|FB120_ARATH F-box protein At2g31470 OS=Arabidopsis tha...    36   0.16 
sp|Q81487|POLG_HCVTR Genome polyprotein OS=Hepatitis C virus gen...    35   0.28 
sp|Q9C6J2|FB53_ARATH Putative F-box protein At1g50880 OS=Arabido...    35   0.28 
sp|Q9Z0Z3|SKP2_MOUSE S-phase kinase-associated protein 2 OS=Mus ...    35   0.36 
sp|P0C2C9|FBX12_ARATH F-box only protein 12 OS=Arabidopsis thali...    35   0.36 
sp|Q9S9X4|FBL8_ARATH Putative F-box/LRR-repeat protein 8 OS=Arab...    35   0.48 
sp|Q9FZF3|FB43_ARATH Putative F-box protein At1g47765 OS=Arabido...    35   0.48 
sp|Q9M1A7|FBK75_ARATH F-box/Kelch-repeat protein At3g59610 OS=Ar...    34   0.62 
sp|Q9LIR8|FBK67_ARATH F-box/Kelch-repeat protein At3g23880 OS=Ar...    34   0.62 
sp|P0C2G2|FB21_ARATH Putative F-box protein At1g30920 OS=Arabido...    34   0.62 
sp|Q9LUT1|FB151_ARATH Putative F-box protein At3g17400 OS=Arabid...    34   0.62 
sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis tha...    34   0.62 
sp|Q13309|SKP2_HUMAN S-phase kinase-associated protein 2 OS=Homo...    34   0.81 
sp|Q8K3B1|FBSP1_MOUSE F-box/SPRY domain-containing protein 1 OS=...    34   0.81 
sp|Q9MAP1|FB33_ARATH Putative F-box protein At1g33020 OS=Arabido...    34   0.81 
sp|Q9LIR1|FB182_ARATH Putative F-box protein At3g23960 OS=Arabid...    34   0.81 
sp|Q9Y0T2|FBXA_DICDI F-box/WD repeat-containing protein A OS=Dic...    33   1.1  
sp|Q9LPH0|FB57_ARATH Putative F-box protein At1g53550 OS=Arabido...    33   1.1  
sp|Q9C6J3|FB52_ARATH Putative F-box protein At1g50870 OS=Arabido...    33   1.1  
sp|Q9LW55|FB180_ARATH Putative F-box protein At3g23420 OS=Arabid...    33   1.1  
sp|Q9ZNQ3|FBLK3_ARATH F-box/LRR-repeat/Kelch-repeat protein At2g...    33   1.4  
sp|Q9FVS1|FBK23_ARATH F-box/Kelch-repeat protein At1g57790 OS=Ar...    33   1.4  
sp|Q9FKZ7|FB301_ARATH Putative F-box protein At5g66830 OS=Arabid...    33   1.4  

>sp|Q9FZK1|FBX6_ARATH F-box only protein 6 OS=Arabidopsis thaliana
           GN=FBX6 PE=2 SV=1
          Length = 467

 Score = 48.1 bits (113), Expect = 4e-05
 Identities = 24/67 (35%), Positives = 38/67 (56%)
 Frame = +3

Query: 468 VRAPQMGSSRDRSIGSSEQQVEVINHRKRGATSSSIWDNLPQELADXVFSLLPVASIFRC 647
           V+ P   + ++R+ G S  +V+ I+    G     IW   PQ+L + V S LP+A+ F+ 
Sbjct: 85  VKPPVKRTRKERTQGKSCTEVDEIS----GNMDQEIWQEFPQDLFEDVVSRLPMATFFQF 140

Query: 648 RCVCKKW 668
           R VC+KW
Sbjct: 141 RAVCRKW 147


>sp|Q9SXA0|FB42_ARATH Putative F-box protein At1g47730
           OS=Arabidopsis thaliana GN=At1g47730 PE=4 SV=1
          Length = 391

 Score = 40.4 bits (93), Expect = 0.009
 Identities = 21/53 (39%), Positives = 29/53 (54%)
 Frame = +3

Query: 519 EQQVEVINHRKRGATSSSIWDNLPQELADXVFSLLPVASIFRCRCVCKKWLQV 677
           E+   +   R RG +SSS   +LP +L   +FS LP  S+ R RCV K W  +
Sbjct: 6   EKTENIQRKRSRGKSSSS---SLPLDLTSEIFSRLPAKSVVRFRCVSKLWSSI 55


>sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis
           thaliana GN=UFO PE=1 SV=2
          Length = 442

 Score = 39.7 bits (91), Expect = 0.015
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 573 IWDNLPQELADXVFSLLPVASIFRCRCVCKKW 668
           IW  LP  L D V + LP  + FR RCVCK++
Sbjct: 46  IWSKLPPPLLDRVIAFLPPPAFFRTRCVCKRF 77


>sp|Q9M310|FBK77_ARATH F-box/Kelch-repeat protein At3g61590
           OS=Arabidopsis thaliana GN=At3g61590 PE=2 SV=1
          Length = 411

 Score = 39.7 bits (91), Expect = 0.015
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +3

Query: 585 LPQELADXVFSLLPVASIFRCRCVCKKWLQV 677
           LP +L + + S LP+ASIFR   VCK+W ++
Sbjct: 43  LPDDLLERILSFLPIASIFRAGTVCKRWNEI 73


>sp|Q9LFV5|FK111_ARATH F-box/Kelch-repeat protein At5g15710
           OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1
          Length = 448

 Score = 37.7 bits (86), Expect = 0.056
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 573 IWDNLPQELADXVFSLLPVASIFRCRCVCKKW 668
           IW  LP++L + + + +P   IFR R VCKKW
Sbjct: 103 IWAMLPEDLLNEILARVPPFMIFRIRSVCKKW 134


>sp|Q9LQL5|FB30_ARATH Putative F-box protein At1g32420
           OS=Arabidopsis thaliana GN=At1g32420 PE=4 SV=1
          Length = 302

 Score = 37.7 bits (86), Expect = 0.056
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +3

Query: 486 GSSRDRSIGSSEQQVEVINHRKRGATSSSIWDNLPQELADXVFSLLPVASIFRCRCVCKK 665
           G+  +    SS    + ++ RK  A   S   N+P +L   +   LP  S+ R +CV K+
Sbjct: 4   GNEENNHKTSSSSSTQRLSRRKISAGEKSGNVNIPLDLTVEILKKLPAKSLLRFQCVSKQ 63

Query: 666 WLQV 677
           WL +
Sbjct: 64  WLSI 67


>sp|Q9LNF6|FB48_ARATH F-box protein At1g48060 OS=Arabidopsis
           thaliana GN=At1g48060 PE=2 SV=2
          Length = 245

 Score = 36.2 bits (82), Expect = 0.16
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +3

Query: 546 RKRGATSSSIWDNLPQELADXVFSLLPVASIFRCRCVCKKWLQV 677
           RKR  +SSS+  ++P ++A  +F  LP  S+ R  CV K W  +
Sbjct: 15  RKRSKSSSSL--SIPLDIATDIFLRLPAKSVVRFSCVAKHWSSI 56


>sp|Q5BPS3|FB120_ARATH F-box protein At2g31470 OS=Arabidopsis
           thaliana GN=At2g31470 PE=1 SV=1
          Length = 184

 Score = 36.2 bits (82), Expect = 0.16
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +3

Query: 513 SSEQQVEVINHRKRGATSSSIWDNLPQELADXVFSLLPVASIFRCRCVCKKWLQV 677
           S  Q V V      G   +  ++ +P +L   +FS  PV SI RCRCV K W  +
Sbjct: 3   SRRQNVSVARQTILGRDEN--FEPIPIDLVIEIFSRSPVKSIARCRCVSKLWASI 55


>sp|Q81487|POLG_HCVTR Genome polyprotein OS=Hepatitis C virus
           genotype 3b (isolate Tr-Kj) PE=3 SV=3
          Length = 3023

 Score = 35.4 bits (80), Expect = 0.28
 Identities = 20/64 (31%), Positives = 35/64 (54%)
 Frame = +1

Query: 31  IPTCGFVQWTRRLFSRIPSSASPLWKQAASNPSLVIFECPSRHPLFQPDVVLLHLNILLP 210
           +P C F  +   LFS +   AS L  + AS   L+  +C +R  +++ D V+LHL   +P
Sbjct: 169 LPGCSFSIFLLALFSCLTCPASSLEYRNASGLYLLTNDCSNRSIVYEADDVILHLPGCVP 228

Query: 211 ALDS 222
            +++
Sbjct: 229 CVET 232


>sp|Q9C6J2|FB53_ARATH Putative F-box protein At1g50880
           OS=Arabidopsis thaliana GN=At1g50880 PE=4 SV=1
          Length = 279

 Score = 35.4 bits (80), Expect = 0.28
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 558 ATSSSIWDNLPQELADXVFSLLPVASIFRCRCVCKKWLQV 677
           +T SS   ++P ++   + + LP  S+ R RCV K+W  +
Sbjct: 16  STQSSSMSSIPLDVTSKILAKLPAKSVLRARCVSKQWSSI 55
tr_hit_id A9TDG3
Definition tr|A9TDG3|A9TDG3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 41
Score (bit) 51.6
E-value 5.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961233|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_I22, 5'
         (677 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TDG3|A9TDG3_PHYPA Predicted protein OS=Physcomitrella paten...    52   5e-05
tr|A9SVA4|A9SVA4_PHYPA Predicted protein OS=Physcomitrella paten...    50   1e-04
tr|A9T141|A9T141_PHYPA Predicted protein OS=Physcomitrella paten...    50   1e-04
tr|A9SEW3|A9SEW3_PHYPA Predicted protein OS=Physcomitrella paten...    49   4e-04
tr|B8LMU8|B8LMU8_PICSI Putative uncharacterized protein OS=Picea...    48   5e-04
tr|A9SDA0|A9SDA0_PHYPA Predicted protein OS=Physcomitrella paten...    47   8e-04
tr|Q84UE8|Q84UE8_LOTJA Proliferating floral organs protein (UFO-...    45   0.003
tr|A9TZQ0|A9TZQ0_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.003
tr|A9SES1|A9SES1_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.003
tr|A9TRX8|A9TRX8_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.006
tr|A9S8X6|A9S8X6_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.006
tr|A9TB91|A9TB91_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.007
tr|A7P2M5|A7P2M5_VITVI Chromosome chr1 scaffold_5, whole genome ...    44   0.007
tr|B6U651|B6U651_MAIZE F-box domain containing protein OS=Zea ma...    44   0.009
tr|A9TXI0|A9TXI0_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.016
tr|A9TTQ6|A9TTQ6_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.016
tr|A9S6L0|A9S6L0_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.016
tr|A9TXA2|A9TXA2_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.021
tr|A9TSJ1|A9TSJ1_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.021
tr|Q2WBM6|Q2WBM6_9LAMI Fimbriata protein OS=Misopates orontium G...    42   0.027
tr|Q6QVW9|Q6QVW9_MIMLE Fimbriata (Fragment) OS=Mimulus lewisii G...    42   0.036
tr|Q41223|Q41223_ANTMA Fim protein OS=Antirrhinum majus GN=fim P...    42   0.036
tr|B8Y9B5|B8Y9B5_PONTR F-box family protein OS=Poncirus trifolia...    42   0.047
tr|B6DXL9|B6DXL9_MALDO Fbox protein OS=Malus domestica PE=2 SV=1       42   0.047
tr|A9RBY7|A9RBY7_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.047
tr|A9SS13|A9SS13_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.061
tr|A9TDG5|A9TDG5_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.080
tr|A7QP47|A7QP47_VITVI Chromosome chr1 scaffold_136, whole genom...    41   0.080
tr|A5BZT8|A5BZT8_VITVI Putative uncharacterized protein OS=Vitis...    41   0.080
tr|Q6QVW8|Q6QVW8_MIMGU Fimbriata (Fragment) OS=Mimulus guttatus ...    40   0.14 

>tr|A9TDG3|A9TDG3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_169426 PE=4 SV=1
          Length = 758

 Score = 51.6 bits (122), Expect = 5e-05
 Identities = 18/41 (43%), Positives = 29/41 (70%)
 Frame = +3

Query: 555 GATSSSIWDNLPQELADXVFSLLPVASIFRCRCVCKKWLQV 677
           G   ++IW NLP+E+ + +F+LLP  ++FRC  +CKKW  +
Sbjct: 387 GDLDATIWKNLPEEVLERIFALLPFPNLFRCATICKKWRMI 427


>tr|A9SVA4|A9SVA4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166753 PE=4 SV=1
          Length = 463

 Score = 50.4 bits (119), Expect = 1e-04
 Identities = 18/40 (45%), Positives = 27/40 (67%)
 Frame = +3

Query: 558 ATSSSIWDNLPQELADXVFSLLPVASIFRCRCVCKKWLQV 677
           A   ++W NLP+ L D + + LP+ S FR RCVCK+W ++
Sbjct: 70  ALDEALWSNLPEHLHDIILAFLPLPSFFRLRCVCKRWNEI 109


>tr|A9T141|A9T141_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_234671 PE=4 SV=1
          Length = 462

 Score = 50.1 bits (118), Expect = 1e-04
 Identities = 19/55 (34%), Positives = 36/55 (65%)
 Frame = +3

Query: 504 SIGSSEQQVEVINHRKRGATSSSIWDNLPQELADXVFSLLPVASIFRCRCVCKKW 668
           ++ S+ + ++++      A   S+W +LP++L + V + LP+ S+FR RCVCK+W
Sbjct: 54  AVASTSEDIQMV------AMDESVWKSLPEDLMERVLAWLPIHSLFRMRCVCKQW 102


>tr|A9SEW3|A9SEW3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_229126 PE=4 SV=1
          Length = 569

 Score = 48.5 bits (114), Expect = 4e-04
 Identities = 18/33 (54%), Positives = 25/33 (75%)
 Frame = +3

Query: 570 SIWDNLPQELADXVFSLLPVASIFRCRCVCKKW 668
           +IW  LP+E+ D V + LP+++ FR RCVCKKW
Sbjct: 199 NIWSRLPEEVMDLVLAWLPLSAFFRMRCVCKKW 231


>tr|B8LMU8|B8LMU8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 416

 Score = 48.1 bits (113), Expect = 5e-04
 Identities = 17/33 (51%), Positives = 24/33 (72%)
 Frame = +3

Query: 570 SIWDNLPQELADXVFSLLPVASIFRCRCVCKKW 668
           ++W  LP++L D +FS LP+ SI   RCVCK+W
Sbjct: 41  NLWSGLPEDLMDRIFSCLPLTSILHLRCVCKRW 73


>tr|A9SDA0|A9SDA0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164284 PE=4 SV=1
          Length = 648

 Score = 47.4 bits (111), Expect = 8e-04
 Identities = 19/41 (46%), Positives = 26/41 (63%)
 Frame = +3

Query: 546 RKRGATSSSIWDNLPQELADXVFSLLPVASIFRCRCVCKKW 668
           RK     + IW+ LP+EL + V   +P+ S+ R RCVCKKW
Sbjct: 289 RKGSVLDAKIWNKLPEELLERVLLYVPLKSLVRFRCVCKKW 329


>tr|Q84UE8|Q84UE8_LOTJA Proliferating floral organs protein
           (UFO-like protein) OS=Lotus japonicus GN=Pfo PE=2 SV=1
          Length = 449

 Score = 45.4 bits (106), Expect = 0.003
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = +3

Query: 564 SSSIWDNLPQELADXVFSLLPVASIFRCRCVCKKW 668
           +S IW  LPQ+L D V + LP  + FR R VCK+W
Sbjct: 55  NSRIWSKLPQKLLDRVIAFLPTPAFFRARSVCKRW 89


>tr|A9TZQ0|A9TZQ0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_172882 PE=4 SV=1
          Length = 593

 Score = 45.4 bits (106), Expect = 0.003
 Identities = 24/66 (36%), Positives = 36/66 (54%)
 Frame = +3

Query: 480 QMGSSRDRSIGSSEQQVEVINHRKRGATSSSIWDNLPQELADXVFSLLPVASIFRCRCVC 659
           Q+   R+ S G+ E   E+           +IW +LP+++AD +   LPVAS  R R VC
Sbjct: 210 QVVFERNLSFGNRESDPEM---------DENIWQSLPEDVADKILLWLPVASCARFRPVC 260

Query: 660 KKWLQV 677
           K+WL +
Sbjct: 261 KRWLNL 266


>tr|A9SES1|A9SES1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_233086 PE=4 SV=1
          Length = 456

 Score = 45.4 bits (106), Expect = 0.003
 Identities = 21/42 (50%), Positives = 28/42 (66%)
 Frame = +3

Query: 552 RGATSSSIWDNLPQELADXVFSLLPVASIFRCRCVCKKWLQV 677
           RGA S   W  LP++L + VF+ LP+ S+F+ RCVCK W  V
Sbjct: 102 RGAESPP-WTMLPKDLIEKVFAFLPLHSLFQARCVCKCWKSV 142


>tr|A9TRX8|A9TRX8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171592 PE=4 SV=1
          Length = 612

 Score = 44.7 bits (104), Expect = 0.006
 Identities = 17/35 (48%), Positives = 25/35 (71%)
 Frame = +3

Query: 573 IWDNLPQELADXVFSLLPVASIFRCRCVCKKWLQV 677
           +W  LP++L + VF+ LP+ S+F+ RCVCK W  V
Sbjct: 264 LWTMLPKDLIEKVFAFLPLHSLFQARCVCKCWKSV 298