| DK961200 |
| Clone id |
TST39A01NGRL0009_H12 |
| Library |
TST39 |
| Length |
567 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_H12. 5' end sequence. |
| Accession |
DK961200 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
- |
| Sequence |
GTTTCTTGTCCATGCAGTTCTAGTCCATGCAGTAAGAAGACGTTCCAGTATTCAGAGAAT
GGCGATGCAATTCCTGAACGGTTTAAGAGGAGTGAGGGTGAAGGATGTGCCACAGCACAT
AAAGCCGCTGCTGAACCGAGAGAAGGCGAAGAAGGCTGTGGAAGACTTTTTTCTGGAGTA
CAAGCGCAAATACATTGAAACAGGCAGCATCAAGCCCCTGCATCACGTCCTCCTTGGTGT
GGGTGTCTTTTCTTACTTCCTTGCTCTGCCCCACGAGCGACGCCACCTGGCTCACCTTGA
AGAAGAGGCCAAGCATGGAAAAGGTCATAATCACTAGTTCTTCAGGTTTCGGTGAGATAT
TGGAAAGCTTGAACAAAAGGAAACATTCTGGGATTATTAGGAGTAGTCCAGTGGTTGGCA
AGAAGCTGTTTTTGAATCAAACATGATTGGATCTTGCTTGGCTCAGTTGTCCTTTCAAAT
AAAGAAATTCCAAGGTTTCAGGTGGTNNANAAAAAAAAAAAATAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q9RJH9 |
| Definition |
sp|Q9RJH9|KATG_STRCO Catalase-peroxidase OS=Streptomyces coelicolor |
| Align length |
32 |
| Score (bit) |
31.2 |
| E-value |
2.9 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961200|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_H12, 5'
(510 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9RJH9|KATG_STRCO Catalase-peroxidase OS=Streptomyces coelico... 31 2.9
sp|Q876L4|AKR2_SACBA Probable palmitoyltransferase AKR2 OS=Sacch... 31 3.9
sp|A0ACX8|KATG_STRAM Catalase-peroxidase OS=Streptomyces ambofac... 30 5.0
sp|Q2JBP8|KATG_FRASC Catalase-peroxidase OS=Frankia sp. (strain ... 30 5.0
sp|Q1LJ59|TGT_RALME Queuine tRNA-ribosyltransferase OS=Ralstonia... 30 5.0
sp|Q0K733|TGT_RALEH Queuine tRNA-ribosyltransferase OS=Ralstonia... 30 5.0
sp|A5IJQ9|SYP_THEP1 Prolyl-tRNA synthetase OS=Thermotoga petroph... 30 5.0
sp|Q9WYY4|SYP_THEMA Prolyl-tRNA synthetase OS=Thermotoga maritim... 30 5.0
sp|Q8N3X6|LCORL_HUMAN Ligand-dependent nuclear receptor corepres... 30 5.0
sp|Q17V54|F16PA_HELAH Fructose-1,6-bisphosphatase class 1 OS=Hel... 30 5.0
sp|Q4UM75|COXZ_RICFE Cytochrome c oxidase assembly protein ctaG ... 30 5.0
sp|Q46XG4|TGT_RALEJ Queuine tRNA-ribosyltransferase OS=Ralstonia... 30 6.6
sp|Q6FEJ4|TGT_ACIAD Queuine tRNA-ribosyltransferase OS=Acinetoba... 30 6.6
sp|Q15652|JHD2C_HUMAN Probable JmjC domain-containing histone de... 30 6.6
sp|P38894|FLO5_YEAST Flocculation protein FLO5 OS=Saccharomyces ... 30 6.6
sp|Q30RP0|F16PA_SULDN Fructose-1,6-bisphosphatase class 1 OS=Sul... 30 6.6
sp|A1VJ15|TGT_POLNA Queuine tRNA-ribosyltransferase OS=Polaromon... 30 8.6
sp|Q7VLQ4|TGT_HAEDU Queuine tRNA-ribosyltransferase OS=Haemophil... 30 8.6
sp|P60373|RFCL_NANEQ Replication factor C large subunit OS=Nanoa... 30 8.6
sp|Q6G121|MRAY_BARQU Phospho-N-acetylmuramoyl-pentapeptide-trans... 30 8.6
sp|Q6G2Q2|MRAY_BARHE Phospho-N-acetylmuramoyl-pentapeptide-trans... 30 8.6
>sp|Q9RJH9|KATG_STRCO Catalase-peroxidase OS=Streptomyces coelicolor
GN=katG PE=1 SV=1
Length = 740
Score = 31.2 bits (69), Expect = 2.9
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 52 SENGDAIPERFKRSEGEGCATAHKAAAEPREG 147
SEN DAI K E +GC AH A P +G
Sbjct: 2 SENHDAIVTDAKTEETDGCPVAHGRAPHPTQG 33
>sp|Q876L4|AKR2_SACBA Probable palmitoyltransferase AKR2
OS=Saccharomyces bayanus GN=AKR2 PE=3 SV=1
Length = 730
Score = 30.8 bits (68), Expect = 3.9
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 12/81 (14%)
Frame = -2
Query: 494 LGISLFERTTEPSKIQSCLIQKQLLANHWTTP------NNPRMFPFVQAFQYLTET*RTS 333
LGIS R + L++ L+ANHW T N+ P Q F Y ++T +
Sbjct: 646 LGISNLLRGNSQPRHNHSLLRNFLVANHWKTNLTDFWLNSDVTAPLWQRFFYSSDTSKAM 705
Query: 332 ------DYDLFHAWPLLQGEP 288
DY + P +GEP
Sbjct: 706 LGGVEVDYYQLYELPAREGEP 726
>sp|A0ACX8|KATG_STRAM Catalase-peroxidase OS=Streptomyces
ambofaciens GN=katG PE=3 SV=1
Length = 738
Score = 30.4 bits (67), Expect = 5.0
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +1
Query: 52 SENGDAIPERFKRSEGEGCATAHKAAAEPREG 147
SEN DAI K E GC AH A P +G
Sbjct: 2 SENHDAIVTDAKTEEAGGCPVAHGRAPHPTQG 33
>sp|Q2JBP8|KATG_FRASC Catalase-peroxidase OS=Frankia sp. (strain
CcI3) GN=katG PE=3 SV=1
Length = 744
Score = 30.4 bits (67), Expect = 5.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 52 SENGDAIPERFKRSEGEGCATAHKAAAEPREG 147
SEN DA+ G GC AH+ A P +G
Sbjct: 2 SENHDAVVYNTNAENGGGCPVAHRRAPHPTQG 33
>sp|Q1LJ59|TGT_RALME Queuine tRNA-ribosyltransferase OS=Ralstonia
metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
GN=tgt PE=3 SV=1
Length = 376
Score = 30.4 bits (67), Expect = 5.0
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 297 LKKRPSMEKVIITSSSGFGEI-LESLNKRKHSGIIRSSPVVGKKLFLN 437
L K +K I+T S GF L L K G+ +SPV G KLFL+
Sbjct: 77 LHKFIGWDKPILTDSGGFQVFSLGELRKITEEGVTFASPVNGDKLFLS 124
>sp|Q0K733|TGT_RALEH Queuine tRNA-ribosyltransferase OS=Ralstonia
eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier
337) GN=tgt PE=3 SV=1
Length = 376
Score = 30.4 bits (67), Expect = 5.0
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 297 LKKRPSMEKVIITSSSGFGEI-LESLNKRKHSGIIRSSPVVGKKLFLN 437
L K +K I+T S GF L L K G+ +SPV G KLFL+
Sbjct: 77 LHKFIGWDKPILTDSGGFQVFSLGDLRKITEDGVTFASPVNGDKLFLS 124
>sp|A5IJQ9|SYP_THEP1 Prolyl-tRNA synthetase OS=Thermotoga petrophila
(strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=proS PE=3
SV=1
Length = 577
Score = 30.4 bits (67), Expect = 5.0
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 297 LKKRPSMEKVIITSSSGFGEILESLNKRK 383
LKKR S E V + +GFG +LE+L K K
Sbjct: 539 LKKRYSKELVKVNIKNGFGTLLETLEKMK 567
>sp|Q9WYY4|SYP_THEMA Prolyl-tRNA synthetase OS=Thermotoga maritima
GN=proS PE=3 SV=1
Length = 577
Score = 30.4 bits (67), Expect = 5.0
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 297 LKKRPSMEKVIITSSSGFGEILESLNKRK 383
LKKR S E V + +GFG +LE+L K K
Sbjct: 539 LKKRYSKELVKVNIKNGFGALLETLEKMK 567
>sp|Q8N3X6|LCORL_HUMAN Ligand-dependent nuclear receptor
corepressor-like protein OS=Homo sapiens GN=LCORL PE=2
SV=4
Length = 602
Score = 30.4 bits (67), Expect = 5.0
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Frame = +2
Query: 50 IQRMAMQFLNGLRGVRVKDVPQHIKP---LLNREKAKKAVEDFFLEYKRKYIET-----G 205
I+ A +LN L R KD+PQ+ P L+ +E KK + F +EY K +T G
Sbjct: 128 IECQAENYLNAL--FRKKDLPQNCDPNIPLVAQELMKKMIRQFAIEYISKSGKTQENRNG 185
Query: 206 SIKP 217
SI P
Sbjct: 186 SIGP 189
>sp|Q17V54|F16PA_HELAH Fructose-1,6-bisphosphatase class 1
OS=Helicobacter acinonychis (strain Sheeba) GN=fbp PE=3
SV=1
Length = 290
Score = 30.4 bits (67), Expect = 5.0
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 149 KKAVEDFFLEYKRKYIETGSIKPLHHVLLGV-GVFSY 256
KKA+E FF E R + +HHVL+ GVFSY
Sbjct: 186 KKALEGFFTENYRLRYSGSMVADVHHVLIKKGGVFSY 222
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9SKG1 |
| Definition |
tr|A9SKG1|A9SKG1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
| Align length |
86 |
| Score (bit) |
67.0 |
| E-value |
5.0e-10 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961200|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_H12, 5'
(510 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A9SKG1|A9SKG1_PHYPA Predicted protein OS=Physcomitrella paten... 67 5e-10
tr|A9NXC1|A9NXC1_PICSI Putative uncharacterized protein OS=Picea... 66 1e-09
tr|A7QXM3|A7QXM3_VITVI Chromosome undetermined scaffold_226, who... 60 5e-08
tr|B6TLX2|B6TLX2_MAIZE Fiber protein Fb15 OS=Zea mays PE=4 SV=1 59 2e-07
tr|Q7X9S5|Q7X9S5_GOSBA Fiber protein Fb15 OS=Gossypium barbadens... 57 5e-07
tr|A9PIP6|A9PIP6_POPJC Putative uncharacterized protein OS=Popul... 57 5e-07
tr|Q6EUQ5|Q6EUQ5_ORYSJ Os02g0175800 protein OS=Oryza sativa subs... 56 1e-06
tr|A2X1I4|A2X1I4_ORYSI Putative uncharacterized protein OS=Oryza... 56 1e-06
tr|Q5YJM6|Q5YJM6_HYAOR Fiber protein (Fragment) OS=Hyacinthus or... 55 2e-06
tr|A9T5N6|A9T5N6_PHYPA Predicted protein (Fragment) OS=Physcomit... 55 3e-06
tr|B4UW72|B4UW72_ARAHY Fiber protein Fb15 (Fragment) OS=Arachis ... 54 3e-06
tr|Q9SZV4|Q9SZV4_ARATH Putative uncharacterized protein F6G3.40 ... 42 0.013
tr|Q00SS3|Q00SS3_OSTTA Homology to unknown gene OS=Ostreococcus ... 42 0.013
tr|A5DQW3|A5DQW3_PICGU Predicted protein OS=Pichia guilliermondi... 41 0.038
tr|B4W016|B4W016_9CYAN Integral membrane protein DUF6 OS=Microco... 35 2.1
tr|A4S9R7|A4S9R7_OSTLU Predicted protein OS=Ostreococcus lucimar... 34 3.6
tr|B7A8Z7|B7A8Z7_THEAQ Putative uncharacterized protein OS=Therm... 33 8.0
tr|Q8I446|Q8I446_PLAF7 Putative uncharacterized protein PFE0275w... 33 8.0
tr|A5AY14|A5AY14_VITVI Putative uncharacterized protein OS=Vitis... 33 8.1
>tr|A9SKG1|A9SKG1_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_131352 PE=4 SV=1
Length = 90
Score = 67.0 bits (162), Expect = 5e-10
Identities = 34/86 (39%), Positives = 45/86 (52%)
Frame = +2
Query: 74 LNGLRGVRVKDVPQHIKPLLNREKAKKAVEDFFLEYKRKYIETGSIKPLHHVLLGVGVFS 253
L L ++VKDVP H+K L+REK + + +Y KYI+TGSI+PL V+L VG S
Sbjct: 5 LRNLASMKVKDVPNHLKSNLSREKVMSSTWSWLYKYNEKYIQTGSIRPLMDVMLSVGFLS 64
Query: 254 YFXXXXXXXXXXXXXXXXXKHGKGHN 331
Y KHGK H+
Sbjct: 65 YAIAWPTEIRHLRHAEEAAKHGKDHH 90
>tr|A9NXC1|A9NXC1_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=4 SV=1
Length = 90
Score = 65.9 bits (159), Expect = 1e-09
Identities = 30/63 (47%), Positives = 45/63 (71%)
Frame = +2
Query: 68 QFLNGLRGVRVKDVPQHIKPLLNREKAKKAVEDFFLEYKRKYIETGSIKPLHHVLLGVGV 247
QF N +RG++VKDVP +IKP+L+++ K V +Y KYI+T SI+PL+H++ G +
Sbjct: 5 QFYNEIRGLKVKDVPGYIKPMLSKDFIKTKVTQALDDYNAKYIQTSSIQPLNHIVYGGLL 64
Query: 248 FSY 256
FSY
Sbjct: 65 FSY 67
>tr|A7QXM3|A7QXM3_VITVI Chromosome undetermined scaffold_226, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00009254001 PE=4 SV=1
Length = 92
Score = 60.5 bits (145), Expect = 5e-08
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Frame = +2
Query: 59 MAMQ-FLNGLRGVRVKDVPQHIKPLLNREKAKKAVEDFFLEYKRKYIETGSIKPLHHVLL 235
MAM+ F N +RG++VK++P H+KP+ + KK++ Y KYI+T SI PL HV
Sbjct: 1 MAMRNFYNEIRGLKVKELPAHVKPMFTIDYIKKSINKGLDNYHAKYIQTSSIDPLLHVCY 60
Query: 236 GVGVFSY 256
G +FSY
Sbjct: 61 GGIIFSY 67
>tr|B6TLX2|B6TLX2_MAIZE Fiber protein Fb15 OS=Zea mays PE=4 SV=1
Length = 91
Score = 58.5 bits (140), Expect = 2e-07
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Frame = +2
Query: 59 MAMQFL-NGLRGVRVKDVPQHIKPLLNREKAKKAVEDFFLEYKRKYIETGSIKPLHHVLL 235
MA++ L N +R ++V+DVP ++KP L + KK+ + Y KYI+T S PL+HV +
Sbjct: 1 MALRALYNEIRSMKVRDVPAYLKPRLTWDNVKKSADQAVDRYIEKYIDTSSPDPLYHVCI 60
Query: 236 GVGVFSYF 259
G +FSYF
Sbjct: 61 GGMIFSYF 68
>tr|Q7X9S5|Q7X9S5_GOSBA Fiber protein Fb15 OS=Gossypium barbadense
PE=4 SV=1
Length = 90
Score = 57.0 bits (136), Expect = 5e-07
Identities = 26/58 (44%), Positives = 40/58 (68%)
Frame = +2
Query: 83 LRGVRVKDVPQHIKPLLNREKAKKAVEDFFLEYKRKYIETGSIKPLHHVLLGVGVFSY 256
++G+++K+VP + KP+L+ KK+V+ Y KYIET SI+PL+HV G +FSY
Sbjct: 10 IKGMKLKEVPGYFKPMLSMGYLKKSVQRGLDNYHAKYIETDSIEPLYHVCFGGMIFSY 67
>tr|A9PIP6|A9PIP6_POPJC Putative uncharacterized protein OS=Populus
jackii PE=4 SV=1
Length = 90
Score = 57.0 bits (136), Expect = 5e-07
Identities = 27/58 (46%), Positives = 38/58 (65%)
Frame = +2
Query: 83 LRGVRVKDVPQHIKPLLNREKAKKAVEDFFLEYKRKYIETGSIKPLHHVLLGVGVFSY 256
++G++VK++P H+KP+L+ KKAV+ Y KYIET SI PL HV G + SY
Sbjct: 10 IKGLKVKELPDHVKPMLSIGYVKKAVQRGMDNYHAKYIETSSIDPLLHVCYGGMILSY 67
>tr|Q6EUQ5|Q6EUQ5_ORYSJ Os02g0175800 protein OS=Oryza sativa subsp.
japonica GN=OJ1077_E05.15-1 PE=4 SV=1
Length = 95
Score = 55.8 bits (133), Expect = 1e-06
Identities = 26/61 (42%), Positives = 41/61 (67%)
Frame = +2
Query: 74 LNGLRGVRVKDVPQHIKPLLNREKAKKAVEDFFLEYKRKYIETGSIKPLHHVLLGVGVFS 253
++ +RG++V++VP ++KP L+ E KK+ + Y KYIET S +PL HV+ G+ FS
Sbjct: 7 ISEIRGMKVREVPGYLKPRLSWENVKKSSDQAVDRYIDKYIETSSPEPLFHVIYGLMAFS 66
Query: 254 Y 256
Y
Sbjct: 67 Y 67
>tr|A2X1I4|A2X1I4_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_06064 PE=4 SV=1
Length = 95
Score = 55.8 bits (133), Expect = 1e-06
Identities = 26/61 (42%), Positives = 41/61 (67%)
Frame = +2
Query: 74 LNGLRGVRVKDVPQHIKPLLNREKAKKAVEDFFLEYKRKYIETGSIKPLHHVLLGVGVFS 253
++ +RG++V++VP ++KP L+ E KK+ + Y KYIET S +PL HV+ G+ FS
Sbjct: 7 ISEIRGMKVREVPGYLKPRLSWENVKKSSDQAVDRYIDKYIETSSPEPLFHVIYGLMAFS 66
Query: 254 Y 256
Y
Sbjct: 67 Y 67
>tr|Q5YJM6|Q5YJM6_HYAOR Fiber protein (Fragment) OS=Hyacinthus
orientalis PE=2 SV=1
Length = 135
Score = 55.5 bits (132), Expect = 2e-06
Identities = 23/58 (39%), Positives = 38/58 (65%)
Frame = +2
Query: 83 LRGVRVKDVPQHIKPLLNREKAKKAVEDFFLEYKRKYIETGSIKPLHHVLLGVGVFSY 256
++G++V+++P H+KP L+ KK + Y KYI+T S++PL HV +G +FSY
Sbjct: 9 IKGLKVRELPAHVKPKLSWTNIKKTTDQAVDRYIEKYIDTSSVEPLFHVCIGGMIFSY 66
>tr|A9T5N6|A9T5N6_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_140715 PE=4 SV=1
Length = 90
Score = 54.7 bits (130), Expect = 3e-06
Identities = 28/64 (43%), Positives = 38/64 (59%)
Frame = +2
Query: 65 MQFLNGLRGVRVKDVPQHIKPLLNREKAKKAVEDFFLEYKRKYIETGSIKPLHHVLLGVG 244
M F L +++KDVP I+ N++ +K F Y KYI+TGSIKPL+ VL+ V
Sbjct: 3 MVFSQRLASMKLKDVPSFIRARANKQFIEKQTWGFLNNYNEKYIKTGSIKPLNDVLISVF 62
Query: 245 VFSY 256
V SY
Sbjct: 63 VLSY 66
|