DK961167 [AcEST]

DK961167
Clone id	TST39A01NGRL0009_G02
Library	TST39
Length	668
Definition	Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_G02. 5' end sequence.
Accession	DK961167
Tissue type	prothallia with plantlets
Developmental stage	gametophytes with sporophytes
Contig ID	-
Sequence	ATTACCCACTAATTGCTGCAATTAACCGCTAATCTCACTTCATTGAACTAGTATGCATAC CGAATTAATTACCTTCCTCAGTTGATGATCACCCCCCATCTCTAAAGTCTCTATATATTA CAGCTTTTGCATGGATCATAGCTATGTTGCACTTGATGTCGATACCGTCGTAAAATCTGG TCCAACAGCAGCTACTCCTCTCCTCCATAATTCTTCACACATTGACAGCCTTCTGATCAA GCCCACCATCAACTCCACCAATATGCAGCACTTTCATGCATCTTCAGGTTTTTACATTGA ACGGAATGTTAAATGCGACGAGATCACATCTGATATGTTTTCGCGCACGGCAACAGCTGT GCAGCTCTACGACAGGTTGCAACTGGTGGATATGGTGCGGTACTCTGCACTTGGAGGCGT CGAATTCCGAGGTTTGCGCTCCATGCCGGTGCCATCTTGCATACCTGCTTTCGATGTGAA GGACTACATCACGTCATCCAATTCATTTAATTTTCTGGCATCGTCATCGCCGTCAGATAT TGAGGCACAGATGAGTACGTCCACATCCAGGAATGGGTTGGGCATGATGCATCATGAGAA AGCAGGGCATGTCAATGCCAAGCCTCATATCAACAGTATGGTGGTCACATCTTCTTTAAC AGGGTTTC
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	A2SDF7
Definition	sp\|A2SDF7\|RL32_METPP 50S ribosomal protein L32 OS=Methylibium petroleiphilum (strain PM1)
Align length	35
Score (bit)	31.6
E-value	4.0
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK961167\|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0009_G02, 5' (668 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|A2SDF7\|RL32_METPP 50S ribosomal protein L32 OS=Methylibium pe... 32 4.0 sp\|A1WAY0\|RL32_ACISJ 50S ribosomal protein L32 OS=Acidovorax sp.... 31 5.2 >sp\|A2SDF7\|RL32_METPP 50S ribosomal protein L32 OS=Methylibium petroleiphilum (strain PM1) GN=rpmF PE=3 SV=1 Length = 60 Score = 31.6 bits (70), Expect = 4.0 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = +2 Query: 206 HNSSHIDSLLIKPTINSTNMQHFHASSGFYIERNV 310 HN+ + L I+PT T+++H +++GFY R V Sbjct: 19 HNALNTPGLAIEPTTGETHLRHHISATGFYRGRKV 53 >sp\|A1WAY0\|RL32_ACISJ 50S ribosomal protein L32 OS=Acidovorax sp. (strain JS42) GN=rpmF PE=3 SV=1 Length = 60 Score = 31.2 bits (69), Expect = 5.2 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +2 Query: 206 HNSSHIDSLLIKPTINSTNMQHFHASSGFYIERNV 310 HN+ + + ++PT T+M+H + +GFY R V Sbjct: 19 HNALTVPGIAVEPTTGETHMRHHISPNGFYRGRQV 53
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	B6F3L6
Definition	tr\|B6F3L6\|B6F3L6_LIBAS Geranyltranstransferase protein OS=Candidatus Liberibacter asiaticus str. psy62
Align length	60
Score (bit)	34.3
E-value	7.2
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK961167\|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0009_G02, 5' (668 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|B6F3L6\|B6F3L6_LIBAS Geranyltranstransferase protein OS=Candid... 34 7.2 >tr\|B6F3L6\|B6F3L6_LIBAS Geranyltranstransferase protein OS=Candidatus Liberibacter asiaticus str. psy62 GN=CLIBASIA_04217 PE=4 SV=1 Length = 237 Score = 34.3 bits (77), Expect = 7.2 Identities = 19/60 (31%), Positives = 32/60 (53%) Frame = +2 Query: 299 ERNVKCDEITSDMFSRTATAVQLYDRLQLVDMVRYSALGGVEFRGLRSMPVPSCIPAFDV 478 E + + D I D+ +TA+ +Q +L+ +RY+ LGG + +RS V C F+V Sbjct: 11 ENSKRIDTILDDLLLQTASHMQTQHNDRLLSAIRYALLGG---KKIRSFLVTECASLFNV 67