DK961024
Clone id TST39A01NGRL0008_P24
Library
Length 636
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_P24. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GCTATGGCGACATCTCCCCCTCCTTTCCCTTCGGACGTGCGGCCATTCTCGGTGAACTGT
CTCACTTCGGCGTTTTTCATCAGAGTCCGCACATAGTGATTGAGCTCCCCCATTTTTTGG
ATCCGCTGCCTTTAAGCTCTTCCATGCTTGTAGCTGTACTTAGAATGTATGATCTGCTGC
TTTTTCGGGCGAAGACTGCTGAGGAAGTAGCTGGGCTCGCTCGTTTCAATTTCCTGCGGA
GTCACTGAGGCAGGCCTGGTACCTCGCTATTCTCTACAAGTAGTTTAAGGTTTGATTTTT
AGCATATTGGGACAGGTTACTTTTGTTTGAGCTGCCTGGACGCTCTGCAACAAGTGCAGA
ATGCCGCAGTTCACTCGGTGCTCCTATTTGCAGCAGCACACTGATTGCTTAGCGGGTATA
CTTTAGACTGTCGAAGGTTGGGCAAGCAGGTCTTGCCTATGATTCTATGGAAGATCTCAA
GACCATGGATAGTGCAAAGTTTGACACCTGCAAGGTTATCATTGACGAGGTGGAAGAGGA
GCTGGGTGCCCTTAACATGTCTTCGGATCATTCTTCAGCATCTCGAGAGGAAATTCTGGC
ATCCATTGAGACTCGACAGAAAGTTGCTGCTGCTAA
■■Homology search results ■■ -
sp_hit_id P17611
Definition sp|P17611|NODG_AZOBR Nodulation protein G OS=Azospirillum brasilense
Align length 44
Score (bit) 30.8
E-value 6.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961024|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_P24, 5'
(636 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P17611|NODG_AZOBR Nodulation protein G OS=Azospirillum brasil... 31 6.1
sp|Q04F76|Y987_OENOB Putative metalloprotease OEOE_0987 OS=Oenoc... 30 8.0
sp|P0C6P5|RGNEF_RAT Rho-guanine nucleotide exchange factor OS=Ra... 30 8.0
sp|P97433|RGNEF_MOUSE Rho-guanine nucleotide exchange factor OS=... 30 8.0

>sp|P17611|NODG_AZOBR Nodulation protein G OS=Azospirillum
brasilense GN=nodG PE=3 SV=2
Length = 246

Score = 30.8 bits (68), Expect = 6.1
Identities = 10/44 (22%), Positives = 29/44 (65%)
Frame = +2

Query: 488 DSAKFDTCKVIIDEVEEELGALNMSSDHSSASREEILASIETRQ 619
D + F++CK ++ ++E +LG +++ +++ +R++ A ++ Q
Sbjct: 61 DVSDFESCKAMVAKIEADLGPVDILVNNAGITRDKFFAKMDKAQ 104


>sp|Q04F76|Y987_OENOB Putative metalloprotease OEOE_0987
OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=OEOE_0987
PE=3 SV=1
Length = 153

Score = 30.4 bits (67), Expect = 8.0
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +2

Query: 512 KVIIDEVEEELGALNMSSDHSSASREEILAS 604
++ ID V EELG L +S DH+ A EE L S
Sbjct: 77 RIHIDGVAEELGDLFISLDHAHAQAEEYLHS 107


>sp|P0C6P5|RGNEF_RAT Rho-guanine nucleotide exchange factor OS=Rattus
norvegicus GN=Rgnef PE=1 SV=1
Length = 1700

Score = 30.4 bits (67), Expect = 8.0
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +3

Query: 42 AILGELSHFGVFHQSPHIVIELPHFLDPLPLSSSMLVAVLRMYDLLLFRAKTAE 203
A LGELS F H PH++I+ P +P P ++S+L A LR + L K ++
Sbjct: 1240 AELGELSGFEDVHLEPHLLIK-PDPGEP-PQAASLLAAALREAESLQVAVKASK 1291


>sp|P97433|RGNEF_MOUSE Rho-guanine nucleotide exchange factor OS=Mus
musculus GN=Rgnef PE=1 SV=1
Length = 1693

Score = 30.4 bits (67), Expect = 8.0
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +3

Query: 42 AILGELSHFGVFHQSPHIVIELPHFLDPLPLSSSMLVAVLRMYDLLLFRAKTAE 203
A LGELS F H PH++I+ P +P P ++S+L A LR + L K ++
Sbjct: 1238 AELGELSGFEDVHLEPHLLIK-PDPGEP-PQAASLLAAALREAESLQVAVKASK 1289


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961024|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_P24, 5'
(636 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******