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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961007
Clone id TST39A01NGRL0008_P07
Library
Length 687
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_P07. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GAAGTTGCCACTTTCTTAGCAATCGGCTATGGTGTTCTCTTAGCAGAAAAGGTGGCTTCT
TCCCCCCAGTTGCCTTTTTCCTACACATCGCTGCTTCTGCTCAAATCTGCTTCACCCACT
TTCAAAAGACTGCTTATGCTGAAGCGCACAACAACATGAGAGGATGCCTCAGCTATGTAA
GGAGAAGAAGTAGGAAGGATATAGTGGGCAACAGTCCGAGTTCTAAAAGAGACAGTGACG
ATGATGACATGAAGAATGAAGTCTGGTTTGATTCGAGGCTAATATTCGAATCTGATTCAG
ATGATGATTTCAAGTCGGTGAATGGCGATTCATTGCCTTCAAGCTTTGGCTACTCTTACT
CGAGCCAAGGAGCACCACGGCCAACCTTTTCATCTTTGAAAGAAAGGATGGAAGAACTGG
TTCGAGAAAACGGTGTACATGAAGCCCACTTTGTCCTACCTCAAAGTGGGCAAACCAGCC
CAGAAGAGAAGAAAACACTGGGACAATTGTTCACTTTCAAGCTAGAAGGAGAGAAAAAGC
CAGAAAGTGAAAATAAGCATTCTGTTATGCCAAGGCAAGGATCAAAGAAGGGGTATCCTG
ATGATGCCGTCTCGCAAAGATCATGCTTTCCTGGAATACTTCCATCCCTAGGCTCGGCCG
AAAAGAAGTCACCGAGTAGTCCAGCAG
■■Homology search results ■■ -
sp_hit_id Q9LK32
Definition sp|Q9LK32|Y3721_ARATH Uncharacterized protein At3g27210 OS=Arabidopsis thaliana
Align length 150
Score (bit) 48.9
E-value 3.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961007|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_P07, 5'
         (687 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LK32|Y3721_ARATH Uncharacterized protein At3g27210 OS=Arabi...    49   3e-05
sp|Q99P84|PLCE1_RAT 1-phosphatidylinositol-4,5-bisphosphate phos...    32   3.2  
sp|Q9NQV7|PRDM9_HUMAN Histone-lysine N-methyltransferase PRDM9 O...    32   4.1  
sp|P0C8Q4|Y4990_ARATH Uncharacterized protein At4g19900 OS=Arabi...    31   5.4  
sp|Q6ZU21|YB019_HUMAN Uncharacterized protein FLJ44048 OS=Homo s...    30   9.2  
sp|Q85FM9|RPOC2_ADICA DNA-directed RNA polymerase subunit beta''...    30   9.2  
sp|Q14CZ8|HECAM_HUMAN Hepatocyte cell adhesion molecule OS=Homo ...    30   9.2  

>sp|Q9LK32|Y3721_ARATH Uncharacterized protein At3g27210
           OS=Arabidopsis thaliana GN=Y-2 PE=1 SV=1
          Length = 234

 Score = 48.9 bits (115), Expect = 3e-05
 Identities = 41/150 (27%), Positives = 60/150 (40%), Gaps = 15/150 (10%)
 Frame = +3

Query: 252 KNEVWFDSRLIFESDSDDDFKSVNGDXXXXXXXXXXXXQGAPRPTFSSLKERMEELVREN 431
           K+E +FDS+   +SDSDDDF SVNGD               P+ +FS    R   L+   
Sbjct: 81  KDETFFDSQPWLQSDSDDDFHSVNGDFTPSLG-------NTPKSSFSDRPPRFHNLI--- 130

Query: 432 GVHEAHFVLPQSGQTSP---EEKKTLGQLFTFKLEGEKKPESENKHSVMP--RQGSKKGY 596
                H   P  G +SP     +K LG+LF   +  E++    +     P     + + +
Sbjct: 131 ----FHEKKPSRGSSSPAPLPRRKKLGELFRDSIREEREESGSSSAISTPYLSGANSREF 186

Query: 597 PDDAVSQRS----------CFPGILPSLGS 656
            D A+ +            C PG     GS
Sbjct: 187 NDTAIEKEEKKKSNWHHHRCLPGFSSCGGS 216


>sp|Q99P84|PLCE1_RAT 1-phosphatidylinositol-4,5-bisphosphate
            phosphodiesterase epsilon-1 OS=Rattus norvegicus GN=Plce1
            PE=1 SV=1
          Length = 2281

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 23/97 (23%), Positives = 43/97 (44%)
 Frame = +3

Query: 381  PTFSSLKERMEELVRENGVHEAHFVLPQSGQTSPEEKKTLGQLFTFKLEGEKKPESENKH 560
            P +SS +E +E +   +G       + Q+G  +PE++ T+  +F       +  E+E++ 
Sbjct: 725  PRYSSQEEALEFVADYSGQDNFLQRVGQNGLKNPEKELTVNSIFQIIRSCSRSLETEDEE 784

Query: 561  SVMPRQGSKKGYPDDAVSQRSCFPGILPSLGSAEKKS 671
            S     GS+K    D    +     +L S     +KS
Sbjct: 785  SASEGSGSRKNSLKDKTRWQFIIGDLLDSDNDIFEKS 821


>sp|Q9NQV7|PRDM9_HUMAN Histone-lysine N-methyltransferase PRDM9
           OS=Homo sapiens GN=PRDM9 PE=2 SV=2
          Length = 894

 Score = 31.6 bits (70), Expect = 4.1
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
 Frame = +3

Query: 366 QGAPRPTFS---SLKE--RMEELVRENGVHEAHFVLPQSGQTSPEEKKTLGQLFTFKLEG 530
           +G P+ +FS   SLKE  R   L+  +G  +A   +  SG+ S     T GQ    KLE 
Sbjct: 117 KGMPKASFSNESSLKELSRTANLLNASGSEQAQKPVSPSGEAS-----TSGQHSRLKLEL 171

Query: 531 EKKPESENKHSVMPRQG 581
            KK      +S+  R+G
Sbjct: 172 RKKETERKMYSLRERKG 188


>sp|P0C8Q4|Y4990_ARATH Uncharacterized protein At4g19900
           OS=Arabidopsis thaliana GN=At4g19900 PE=2 SV=1
          Length = 644

 Score = 31.2 bits (69), Expect = 5.4
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
 Frame = +3

Query: 453 VLPQSGQTSPEEKKTLGQLFTFKLEGEKKPESENKHSV----MPRQGSKKGYPDDAVSQR 620
           +L   G+    E+KTL      + E +K  ESE KH      M   G+K GY        
Sbjct: 294 LLSSVGEIKRGERKTLDNDEKIEREEQKNVESERKHDEVTEHMYADGTKWGY-------- 345

Query: 621 SCFPGILPSLGSAE 662
             +PGI PSL  ++
Sbjct: 346 --YPGIEPSLSFSD 357


>sp|Q6ZU21|YB019_HUMAN Uncharacterized protein FLJ44048 OS=Homo
           sapiens PE=2 SV=2
          Length = 1605

 Score = 30.4 bits (67), Expect = 9.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 531 EKKPESENKHSVMPRQGSKKGYPDDAVSQRSCFPGILPS 647
           EK+ E   K  V     S+   PDD  +QR   PGI P+
Sbjct: 444 EKEEEEREKEKVREEIKSEPSKPDDPQNQRESKPGIFPA 482


>sp|Q85FM9|RPOC2_ADICA DNA-directed RNA polymerase subunit beta''
           OS=Adiantum capillus-veneris GN=rpoC2 PE=2 SV=2
          Length = 1420

 Score = 30.4 bits (67), Expect = 9.2
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +3

Query: 18  SNRLWCSLSRKGGFF--PPVAFFLHIAASAQICFTHFQKTAYAEAHNNM---RGCLSYVR 182
           S+R WC + RKG FF  P   +  H  +S+ +   +      A+  NN+    G L  +R
Sbjct: 644 SSRPWCRVVRKGNFFLIPEEVYLTHEPSSSILVTNNAIVKKGAQITNNIITKSGGLIRMR 703

Query: 183 RRSR 194
           +RSR
Sbjct: 704 KRSR 707


>sp|Q14CZ8|HECAM_HUMAN Hepatocyte cell adhesion molecule OS=Homo
           sapiens GN=HEPACAM PE=1 SV=1
          Length = 416

 Score = 30.4 bits (67), Expect = 9.2
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = +3

Query: 456 LPQSGQTSPEEKKTLGQLFTFKLEGEKKPESENKHSVMPRQGSKKGYPDDAVSQRSCFPG 635
           LP+SG+   +E+K    L+  K   +  PE+E   +  PR  ++ G P  +VS     PG
Sbjct: 296 LPRSGE---QERKNPMALYILK--DKDSPETEENPAPEPRSATEPGPPGYSVS--PAVPG 348

Query: 636 ILPSLG-SAEKKSPSSPA 686
             P L   + ++ P SPA
Sbjct: 349 RSPGLPIRSARRYPRSPA 366
tr_hit_id B8BCE0
Definition tr|B8BCE0|B8BCE0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 26
Score (bit) 42.7
E-value 0.022
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961007|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_P07, 5'
         (687 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8BCE0|B8BCE0_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.022
tr|B7FH33|B7FH33_MEDTR Putative uncharacterized protein OS=Medic...    40   0.14 
tr|Q2QN63|Q2QN63_ORYSJ Os12g0577600 protein OS=Oryza sativa subs...    40   0.18 
tr|B8BMP2|B8BMP2_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.18 
tr|A3CIS4|A3CIS4_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.18 
tr|B6UBW0|B6UBW0_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.24 
tr|Q9SLT5|Q9SLT5_ARATH CW14 protein (Putative uncharacterized pr...    39   0.41 
tr|B6T898|B6T898_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.69 
tr|Q5JJJ8|Q5JJJ8_ORYSJ cDNA clone:J023026C15, full insert sequen...    37   0.91 
tr|A5BSP5|A5BSP5_VITVI Putative uncharacterized protein OS=Vitis...    37   0.91 
tr|A2WYF6|A2WYF6_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.91 
tr|B6TYG3|B6TYG3_MAIZE Putative uncharacterized protein OS=Zea m...    37   1.2  
tr|Q1PDP3|Q1PDP3_ARATH Putative uncharacterized protein OS=Arabi...    37   1.5  
tr|A0MFL1|A0MFL1_ARATH Putative uncharacterized protein (Fragmen...    37   1.5  
tr|A7PN08|A7PN08_VITVI Chromosome chr14 scaffold_21, whole genom...    35   3.4  
tr|Q9SY85|Q9SY85_ARATH F14N23.31 OS=Arabidopsis thaliana PE=4 SV=1     35   5.9  
tr|Q8LPT2|Q8LPT2_ARATH At1g10410/F14N23_31 OS=Arabidopsis thalia...    35   5.9  
tr|Q7XNQ0|Q7XNQ0_ORYSJ OSJNBb0089B03.11 protein (Putative unchar...    35   5.9  
tr|Q0JDS7|Q0JDS7_ORYSJ Os04g0380200 protein OS=Oryza sativa subs...    35   5.9  
tr|A2XSL5|A2XSL5_ORYSI Putative uncharacterized protein OS=Oryza...    35   5.9  
tr|A2FXJ6|A2FXJ6_TRIVA Putative uncharacterized protein OS=Trich...    35   5.9  
tr|Q9A2D3|Q9A2D3_CAUCR Glycosyl transferase family protein OS=Ca...    34   7.7  
tr|Q7URQ9|Q7URQ9_RHOBA Putative uncharacterized protein OS=Rhodo...    34   7.7  
tr|B8H6F1|B8H6F1_CAUCR Glycosyltransferase OS=Caulobacter cresce...    34   7.7  
tr|A5BJK7|A5BJK7_VITVI Putative uncharacterized protein OS=Vitis...    34   7.7  

>tr|B8BCE0|B8BCE0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_29876 PE=4 SV=1
          Length = 542

 Score = 42.7 bits (99), Expect = 0.022
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = +3

Query: 252 KNEVWFDSRLIFESDSDDDFKSVNGD 329
           K + WFDS  I E DSDD+FKSVNGD
Sbjct: 94  KEDAWFDSVSILEDDSDDEFKSVNGD 119


>tr|B7FH33|B7FH33_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 190

 Score = 40.0 bits (92), Expect = 0.14
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
 Frame = +3

Query: 252 KNEVWFDSRLIFESDSDDDFKSVNGDXXXXXXXXXXXXQ-GAPRPTFSSLKERMEELVRE 428
           K E +FDS+   +SD +DDF SVNGD              G P    +S + R       
Sbjct: 66  KEEAFFDSKAWIDSDCEDDFYSVNGDFTPSRGNTPIHHAFGTPGVNKASSRNRTS----- 120

Query: 429 NGVHEAHFVLPQSGQTSPEEKKTLGQLF--TFKLEGEKKPESENKHSVMPR 575
                     P   ++SP++KK L +LF  + K   +   +  NK +  PR
Sbjct: 121 ----------PSPSESSPDKKKKLLELFKDSVKDNQDDDVKKRNKRNHHPR 161


>tr|Q2QN63|Q2QN63_ORYSJ Os12g0577600 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0577600 PE=4 SV=1
          Length = 565

 Score = 39.7 bits (91), Expect = 0.18
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = +3

Query: 252 KNEVWFDSRLIFESDSDDDFKSVNGD 329
           + E WFDS  I  SDSD+DF SVNGD
Sbjct: 84  QEEAWFDSLSILGSDSDEDFSSVNGD 109


>tr|B8BMP2|B8BMP2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38863 PE=4 SV=1
          Length = 566

 Score = 39.7 bits (91), Expect = 0.18
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = +3

Query: 252 KNEVWFDSRLIFESDSDDDFKSVNGD 329
           + E WFDS  I  SDSD+DF SVNGD
Sbjct: 84  QEEAWFDSLSILGSDSDEDFSSVNGD 109


>tr|A3CIS4|A3CIS4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_035196 PE=4 SV=1
          Length = 543

 Score = 39.7 bits (91), Expect = 0.18
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = +3

Query: 252 KNEVWFDSRLIFESDSDDDFKSVNGD 329
           + E WFDS  I  SDSD+DF SVNGD
Sbjct: 84  QEEAWFDSLSILGSDSDEDFSSVNGD 109


>tr|B6UBW0|B6UBW0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 559

 Score = 39.3 bits (90), Expect = 0.24
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = +3

Query: 252 KNEVWFDSRLIFESDSDDDFKSVNGD 329
           + E WFDS  I  SDSD+DF SVNGD
Sbjct: 90  QEEAWFDSVSILGSDSDEDFSSVNGD 115


>tr|Q9SLT5|Q9SLT5_ARATH CW14 protein (Putative uncharacterized
           protein At1g59650) (T30E16.22) OS=Arabidopsis thaliana
           GN=CW14 PE=1 SV=1
          Length = 492

 Score = 38.5 bits (88), Expect = 0.41
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = +3

Query: 255 NEVWFDSRLIFESDSDDDFKSVNGD 329
           +E WFDS L FE+D DDDF SV  D
Sbjct: 57  DEAWFDSNLAFETDCDDDFHSVQED 81


>tr|B6T898|B6T898_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 228

 Score = 37.7 bits (86), Expect = 0.69
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +3

Query: 138 AEAHNNMRGCLS----YVRRRSRKDIVGNXXXXXXXXXXXXMKNEVWFDSRLIFESDSDD 305
           AEA N   GC      +   +S+ D                 K+EV+F+SR   +SD +D
Sbjct: 25  AEAANEKGGCGGGDDDFADFKSKVDAEQQRAELNPKSPDSGSKDEVFFESRAWLDSDCED 84

Query: 306 DFKSVNGD 329
           DF SVNGD
Sbjct: 85  DFYSVNGD 92


>tr|Q5JJJ8|Q5JJJ8_ORYSJ cDNA clone:J023026C15, full insert sequence
           OS=Oryza sativa subsp. japonica GN=B1793G04.5 PE=2 SV=1
          Length = 231

 Score = 37.4 bits (85), Expect = 0.91
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = +3

Query: 252 KNEVWFDSRLIFESDSDDDFKSVNGD 329
           K+E++FDSR   +SD +DDF SVNGD
Sbjct: 66  KDEMFFDSRAWLDSDCEDDFYSVNGD 91


>tr|A5BSP5|A5BSP5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_001040 PE=4 SV=1
          Length = 535

 Score = 37.4 bits (85), Expect = 0.91
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +3

Query: 258 EVWFDSRLIFESDSDDDFKSVNGD 329
           EVWFD  ++FESD DDDF S+  D
Sbjct: 64  EVWFDPVMVFESDLDDDFYSIQED 87