DK960860
Clone id TST39A01NGRL0008_I20
Library
Length 663
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_I20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GCTAGAACTCCGCAATGCAGCGGCTAGCCAGATGATCCACCATTATTCTACAAAGCTTGG
TGATCTATCTCGGCGAAATTCCTCAGATGAAGTGTCAAGTATTTGGATCTGTGTGCGATG
TCGAAGAAAAGCGATCAACAGGTTTACCTTTCGTGCTCTAACTTACTGCATGTGGCCAAC
AAGCGCGACTCTCACTCAATCCCGCAGAAGCGTCGAAGCTCGCAGACAAAAACCCAGTAG
ATAGACTCCTAGCTTCTCGAACCCATCTCCTTAAAAAAACTTGAATCCTTCTGCTCCGAA
GAATCTCACGTAATCCATCAACATTTTGAGGCTCGTCTGCAGGCAATGGCATGGCTCGGT
AAGGTGTCGTTGGGAAACTTTGGTGACATTGCTGGAGCTGTCACAAAGATCAGTGAAAGT
GTCAAAAACATCGAGAAAAACTTTGATTCTGTGCTTGGATTTGATGAGCGAGGCAAATCT
AACGACGAAGCCCAGACTTCCAGCACTGAGAAACTGTCATTATTCGAACCTGTTTTTGCT
TTTGTTGGCCAGAAAGAAGCATCATAGGAAAGTGATGTAGCAGATCCAGAGGATACAATC
TCAAGTCCTGCCAAAGATGAAACGTCGAGTCCTAGCAAAGACAACAATGTTACTCCTGAT
TCA
■■Homology search results ■■ -
sp_hit_id Q0WVL7
Definition sp|Q0WVL7|GOGC5_ARATH Golgin candidate 5 OS=Arabidopsis thaliana
Align length 101
Score (bit) 75.9
E-value 2.0e-13
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960860|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_I20, 5'
(663 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q0WVL7|GOGC5_ARATH Golgin candidate 5 OS=Arabidopsis thaliana... 76 2e-13
sp|P16884|NFH_RAT Neurofilament heavy polypeptide OS=Rattus norv... 34 0.61
sp|Q12348|CSN10_YEAST COP9 signalosome complex subunit 10 OS=Sac... 32 2.3
sp|Q9JK97|KCNQ4_MOUSE Potassium voltage-gated channel subfamily ... 32 3.9
sp|Q95078|CP18A_DROME Cytochrome P450 18a1 OS=Drosophila melanog... 31 5.1
sp|P39448|TRKA_VIBAL Trk system potassium uptake protein trkA OS... 31 6.7
sp|Q17RH7|TPRXL_HUMAN Putative protein TPRXL OS=Homo sapiens GN=... 31 6.7
sp|A4UGR9|XIRP2_HUMAN Xin actin-binding repeat-containing protei... 31 6.7
sp|Q4JK59|TET2_MOUSE Protein TET2 OS=Mus musculus GN=Tet2 PE=2 SV=2 30 8.8
sp|Q6FL35|SMI1_CANGA KNR4/SMI1 homolog OS=Candida glabrata GN=CA... 30 8.8
sp|B0BZQ6|GATB_ACAM1 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf... 30 8.8

>sp|Q0WVL7|GOGC5_ARATH Golgin candidate 5 OS=Arabidopsis thaliana
GN=GC5 PE=1 SV=1
Length = 956

Score = 75.9 bits (185), Expect = 2e-13
Identities = 47/101 (46%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Frame = +1

Query: 346 MAWL-GKVSLGNFGDIAGAVTKISESVKNIEKNFDSVLGFDERGKSNDEAQTSS-----T 507
MAW GKVSLG F D+ GAV K ESVKNIEKNFD+ LGFD++ S E SS
Sbjct: 1 MAWFSGKVSLGGFPDLTGAVNKFQESVKNIEKNFDNALGFDDKSDSAAEDAASSMWPPAV 60

Query: 508 EKLSLFEPVFAFVGQKEAS*ESDVADPEDTISSPAKDETSS 630
+ SLF+PV +F+G SD + DT+ + E S
Sbjct: 61 DTKSLFDPVMSFMGN-----TSD--EKPDTLEDSVRTENPS 94


>sp|P16884|NFH_RAT Neurofilament heavy polypeptide OS=Rattus
norvegicus GN=Nefh PE=1 SV=4
Length = 1072

Score = 34.3 bits (77), Expect = 0.61
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1

Query: 466 ERGKSNDEAQTSSTEK---LSLFEPVFAFVGQKEAS*ESDVADPEDTISSPAKDETSSPS 636
E+ KS + + S EK L + P ++EA +D+ PE + SPAK+E SP
Sbjct: 804 EKAKSPMKEEAKSPEKAKTLDVKSPEAKTPAKEEAKRPADIRSPEQ-VKSPAKEEAKSPE 862

Query: 637 KDNNVT 654
K+ T
Sbjct: 863 KEETRT 868


>sp|Q12348|CSN10_YEAST COP9 signalosome complex subunit 10
OS=Saccharomyces cerevisiae GN=RRI2 PE=1 SV=1
Length = 645

Score = 32.3 bits (72), Expect = 2.3
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2

Query: 548 PTKAKTGSNNDSFSVLEVWASSLDLPRSSNPSTESKFFSMFLTLS 414
PT+ +T S+ + F+ L ++ LPR SN S E F ++ S
Sbjct: 586 PTRIRTKSSKEFFNTLRKSRETVKLPRVSNQSNEDTFLPSYMKFS 630


>sp|Q9JK97|KCNQ4_MOUSE Potassium voltage-gated channel subfamily KQT
member 4 OS=Mus musculus GN=Kcnq4 PE=2 SV=2
Length = 696

Score = 31.6 bits (70), Expect = 3.9
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1

Query: 394 GAVTKISESVKNIEKNFDSVLGFDERGKSNDEAQTSSTEKLSLFEP 531
G V K+ + V++IE D +LGF R + + + T ++ LF+P
Sbjct: 618 GRVVKVEKQVQSIEHKLDLLLGFYSRCLRSGTSASLGTVQVPLFDP 663


>sp|Q95078|CP18A_DROME Cytochrome P450 18a1 OS=Drosophila
melanogaster GN=Cyp18a1 PE=2 SV=2
Length = 538

Score = 31.2 bits (69), Expect = 5.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3

Query: 631 DSTFHLWQDLRLYPLDLLHHFPMMLLSGQQKQKQVRIMT 515
+ST LW+D R + D L F M + ++Q Q RIMT
Sbjct: 134 NSTGKLWKDQRRFLHDKLRQFGMTYMGNGKQQMQKRIMT 172


>sp|P39448|TRKA_VIBAL Trk system potassium uptake protein trkA
OS=Vibrio alginolyticus GN=trkA PE=3 SV=1
Length = 458

Score = 30.8 bits (68), Expect = 6.7
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Frame = +2

Query: 383 VTLLELS-QRSVKVSKTSRKTLILCLD-----LMSEANLTTKPRLPALRNCHYSNXXXXX 544
V L+E + QR+ K+S+ T++ C D L+SE N+ AL N +N
Sbjct: 257 VKLIERNYQRAEKLSEELENTIVFCGDAADQELLSEENIDQVDVFIALTNEDETNIMSAM 316

Query: 545 XARKKHHRKVM*QIQR 592
A++ +KVM IQR
Sbjct: 317 LAKRMGAKKVMVLIQR 332


>sp|Q17RH7|TPRXL_HUMAN Putative protein TPRXL OS=Homo sapiens
GN=TPRXL PE=2 SV=1
Length = 257

Score = 30.8 bits (68), Expect = 6.7
Identities = 28/89 (31%), Positives = 43/89 (48%)
Frame = -2

Query: 593 SSGSATSLSYDASFWPTKAKTGSNNDSFSVLEVWASSLDLPRSSNPSTESKFFSMFLTLS 414
SS S+ S S +S + + + S+ S S +SS PRSS+PS+ S S T S
Sbjct: 162 SSSSSPSSSSPSSSGSSPSSSNSSPSSSSSSPSSSSSSPSPRSSSPSSSSSSTSSPSTSS 221

Query: 413 LIFVTAPAMSPKFPNDTLPSHAIACRRAS 327
++ + S P+ + PS A+ R S
Sbjct: 222 ---PSSSSPSSSSPSSSCPSAALGRRPQS 247


>sp|A4UGR9|XIRP2_HUMAN Xin actin-binding repeat-containing protein 2
OS=Homo sapiens GN=XIRP2 PE=2 SV=2
Length = 3374

Score = 30.8 bits (68), Expect = 6.7
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1

Query: 388 IAGAVTKISESVKNIEKNFDSV---LGFDERGKSNDEAQTSSTEKLSLFEPVFAFVGQKE 558
IAG + IS+S K + KNF G +G A S+TE + F+ AF+ +
Sbjct: 3287 IAGHILDISDSPKEVRKNFQKTWQESGRVFKGLGYATADASATEMRTTFQEESAFISEAA 3346

Query: 559 A 561
A
Sbjct: 3347 A 3347


>sp|Q4JK59|TET2_MOUSE Protein TET2 OS=Mus musculus GN=Tet2 PE=2 SV=2
Length = 1912

Score = 30.4 bits (67), Expect = 8.8
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1

Query: 475 KSNDEAQTSSTEKLSLFEPVFAFVGQKEAS*ESDVADPEDTISSPAKDETSSPSKDN 645
+ + Q S + P+ K +S ++ P++ +SS K E SSPS+DN
Sbjct: 907 QEQQQTQQSQPGHNQMLRPIKTEPVSKPSSYRYPLSPPQENMSSRIKQEISSPSRDN 963


>sp|Q6FL35|SMI1_CANGA KNR4/SMI1 homolog OS=Candida glabrata
GN=CAGL0L06534g PE=3 SV=1
Length = 584

Score = 30.4 bits (67), Expect = 8.8
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = +1

Query: 406 KISESVKNIEKNFDSVLGFDERGKSNDEAQTSSTEKLSLFEPVFAFVGQKEAS*ESDVAD 585
++++SV N + N ++V +E+ K+ E +T + E Q E +S A+
Sbjct: 485 EVTDSVNNADANTEAVPEVEEK-KTEIETETPAEPIEEEEESTNVEAPQVEEEEDSTTAE 543

Query: 586 PEDTISSPAKDETSSPSKDNN 648
P +T+S K + +K N
Sbjct: 544 PAETVSKSKKKKNKKKNKKKN 564


tr_hit_id Q6AT30
Definition tr|Q6AT30|Q6AT30_ORYSJ Os05g0559900 protein OS=Oryza sativa subsp. japonica
Align length 101
Score (bit) 81.6
E-value 4.0e-14
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960860|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_I20, 5'
(663 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q6AT30|Q6AT30_ORYSJ Os05g0559900 protein OS=Oryza sativa subs... 82 4e-14
tr|B8AWQ0|B8AWQ0_ORYSI Putative uncharacterized protein OS=Oryza... 82 4e-14
tr|A3B6R4|A3B6R4_ORYSJ Putative uncharacterized protein OS=Oryza... 82 4e-14
tr|Q2HU52|Q2HU52_MEDTR TRNA-binding arm; t-snare OS=Medicago tru... 72 2e-11
tr|A7QER6|A7QER6_VITVI Chromosome chr16 scaffold_86, whole genom... 68 4e-10
tr|A9TJQ1|A9TJQ1_PHYPA Predicted protein OS=Physcomitrella paten... 62 4e-08
tr|Q9TVY5|Q9TVY5_CAEEL Protein Y48A6B.11a, partially confirmed b... 36 2.5
tr|Q7YSJ2|Q7YSJ2_CAEEL Protein Y48A6B.11b, partially confirmed b... 36 2.5
tr|B0X3M0|B0X3M0_CULQU Microtubule binding protein OS=Culex quin... 36 2.5
tr|B5UTL8|B5UTL8_BACCE Putative uncharacterized protein OS=Bacil... 35 3.2
tr|B8LLM2|B8LLM2_PICSI Putative uncharacterized protein OS=Picea... 35 4.1
tr|A6RJT9|A6RJT9_BOTFB Putative uncharacterized protein OS=Botry... 35 4.1
tr|B0CU27|B0CU27_LACBS Predicted protein OS=Laccaria bicolor (st... 35 5.5

>tr|Q6AT30|Q6AT30_ORYSJ Os05g0559900 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0001A14.17 PE=2 SV=1
Length = 1032

Score = 81.6 bits (200), Expect = 4e-14
Identities = 44/101 (43%), Positives = 62/101 (61%), Gaps = 4/101 (3%)
Frame = +1

Query: 352 WLGKVSLGNFGDIAGAVTKISESVKNIEKNFDSVLGFDERGKSNDE----AQTSSTEKLS 519
W GKVSLG DIAGAV KISESVKNIEKNFDS LG +E K +DE + S+++++
Sbjct: 4 WSGKVSLGGLQDIAGAVNKISESVKNIEKNFDSALGLEE--KRDDEEGSGSHASNSDRIG 61

Query: 520 LFEPVFAFVGQKEAS*ESDVADPEDTISSPAKDETSSPSKD 642
F PV AF+G ++ ++ + S +++ S S +
Sbjct: 62 FFNPVMAFMGNNGEEDSAEASEKQQPPKSTTAEQSQSASTE 102


>tr|B8AWQ0|B8AWQ0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_20957 PE=4 SV=1
Length = 1032

Score = 81.6 bits (200), Expect = 4e-14
Identities = 44/101 (43%), Positives = 62/101 (61%), Gaps = 4/101 (3%)
Frame = +1

Query: 352 WLGKVSLGNFGDIAGAVTKISESVKNIEKNFDSVLGFDERGKSNDE----AQTSSTEKLS 519
W GKVSLG DIAGAV KISESVKNIEKNFDS LG +E K +DE + S+++++
Sbjct: 4 WSGKVSLGGLQDIAGAVNKISESVKNIEKNFDSALGLEE--KRDDEEGSGSHASNSDRIG 61

Query: 520 LFEPVFAFVGQKEAS*ESDVADPEDTISSPAKDETSSPSKD 642
F PV AF+G ++ ++ + S +++ S S +
Sbjct: 62 FFNPVMAFMGNNGEEDSAEASEKQQPPKSTTAEQSQSASTE 102


>tr|A3B6R4|A3B6R4_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_018736 PE=4 SV=1
Length = 1089

Score = 81.6 bits (200), Expect = 4e-14
Identities = 44/101 (43%), Positives = 62/101 (61%), Gaps = 4/101 (3%)
Frame = +1

Query: 352 WLGKVSLGNFGDIAGAVTKISESVKNIEKNFDSVLGFDERGKSNDE----AQTSSTEKLS 519
W GKVSLG DIAGAV KISESVKNIEKNFDS LG +E K +DE + S+++++
Sbjct: 4 WSGKVSLGGLQDIAGAVNKISESVKNIEKNFDSALGLEE--KRDDEEGSGSHASNSDRIG 61

Query: 520 LFEPVFAFVGQKEAS*ESDVADPEDTISSPAKDETSSPSKD 642
F PV AF+G ++ ++ + S +++ S S +
Sbjct: 62 FFNPVMAFMGNNGEEDSAEASEKQQPPKSTTAEQSQSASTE 102


>tr|Q2HU52|Q2HU52_MEDTR TRNA-binding arm; t-snare OS=Medicago
truncatula GN=MtrDRAFT_AC149489g2v2 PE=4 SV=1
Length = 992

Score = 72.4 bits (176), Expect = 2e-11
Identities = 44/97 (45%), Positives = 59/97 (60%), Gaps = 10/97 (10%)
Frame = +1

Query: 346 MAWLG-KVSLGNFGDIAGAVTKISESVKNIEKNFDSVLGFDER---GKSNDEAQTSS--- 504
MAW K + GNF D+AGAV K+ ESVK+IEKNFD+ LGF+E+ +N++A SS
Sbjct: 1 MAWFNAKNAWGNFPDLAGAVNKLQESVKSIEKNFDNALGFEEKDGESSNNEQASESSGSW 60

Query: 505 ---TEKLSLFEPVFAFVGQKEAS*ESDVADPEDTISS 606
T+ +LF PV AF+G K E D + + I S
Sbjct: 61 PIPTDGKALFNPVLAFMGNKG---EEDSEETSENIES 94


>tr|A7QER6|A7QER6_VITVI Chromosome chr16 scaffold_86, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00037126001
PE=4 SV=1
Length = 947

Score = 68.2 bits (165), Expect = 4e-10
Identities = 34/49 (69%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Frame = +1

Query: 346 MAWL-GKVSLGNFGDIAGAVTKISESVKNIEKNFDSVLGFDERGKSNDE 489
MAW GKVSLG F D+AGAV K+SESVKNIEKNFDS LGF+E+ E
Sbjct: 1 MAWFSGKVSLGGFPDLAGAVNKLSESVKNIEKNFDSALGFEEKSDPGGE 49


>tr|A9TJQ1|A9TJQ1_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_170472 PE=4 SV=1
Length = 799

Score = 61.6 bits (148), Expect = 4e-08
Identities = 44/106 (41%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Frame = +1

Query: 346 MAWLGKVSLGNFGDIAGAVTKISESVKNIEKNFDSVLGFDERGKSNDEAQTSSTEKLSLF 525
MAWLG ++ +F AGAVTK+SESVKNIEKNFDS LGF+ S +A +TE SL
Sbjct: 1 MAWLGNFTVSDF---AGAVTKLSESVKNIEKNFDSALGFESVEGSGRDAGVRATEVGSLD 57

Query: 526 EPVFAFVGQK----EAS*ESDVADPEDTISSPAKDETSSPSKDNNV 651
Q ++S E+ ++ E ISS ++ P D+ V
Sbjct: 58 AWPHVVETQSSTLPDSSTEAGISGKEALISSVRENR---PGSDDEV 100


>tr|Q9TVY5|Q9TVY5_CAEEL Protein Y48A6B.11a, partially confirmed by
transcript evidence OS=Caenorhabditis elegans GN=rsa-2
PE=2 SV=1
Length = 947

Score = 35.8 bits (81), Expect = 2.5
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Frame = +1

Query: 391 AGAVTKISESVKNIEKNFDSVLGFDERGKSNDEAQTSSTEKLSLFEPVFAFVG------- 549
+G V+ SES + + L ++ + + EAQ S +E + L PV + V
Sbjct: 548 SGRVSLDSESARRLSAGLSHYLEQVKKERESMEAQESESESMELEIPVVSEVSVTTESEN 607

Query: 550 -QKEAS*ESDVADPEDTISSPAKDETSSPSKDNNVT 654
++ S SD PE ++S +++S S+D N T
Sbjct: 608 LEEVVSEHSDSKSPETLVASDNGEDSSGGSEDPNAT 643


>tr|Q7YSJ2|Q7YSJ2_CAEEL Protein Y48A6B.11b, partially confirmed by
transcript evidence OS=Caenorhabditis elegans GN=rsa-2
PE=2 SV=1
Length = 949

Score = 35.8 bits (81), Expect = 2.5
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Frame = +1

Query: 391 AGAVTKISESVKNIEKNFDSVLGFDERGKSNDEAQTSSTEKLSLFEPVFAFVG------- 549
+G V+ SES + + L ++ + + EAQ S +E + L PV + V
Sbjct: 550 SGRVSLDSESARRLSAGLSHYLEQVKKERESMEAQESESESMELEIPVVSEVSVTTESEN 609

Query: 550 -QKEAS*ESDVADPEDTISSPAKDETSSPSKDNNVT 654
++ S SD PE ++S +++S S+D N T
Sbjct: 610 LEEVVSEHSDSKSPETLVASDNGEDSSGGSEDPNAT 645


>tr|B0X3M0|B0X3M0_CULQU Microtubule binding protein OS=Culex
quinquefasciatus GN=CpipJ_CPIJ013368 PE=4 SV=1
Length = 1044

Score = 35.8 bits (81), Expect = 2.5
Identities = 23/88 (26%), Positives = 42/88 (47%)
Frame = +1

Query: 397 AVTKISESVKNIEKNFDSVLGFDERGKSNDEAQTSSTEKLSLFEPVFAFVGQKEAS*ESD 576
AV +E N EK D +L DEA+ + T L + + VG+++ E
Sbjct: 820 AVAAATEEAAN-EKEIDRLLDEWHSEVKADEAEEAETADADLEKKLEKVVGEEKTEEEPP 878

Query: 577 VADPEDTISSPAKDETSSPSKDNNVTPD 660
+ E+ +++PA++ S + ++ TPD
Sbjct: 879 AKEDEEPVAAPAEEAEPSAATTSDQTPD 906


>tr|B5UTL8|B5UTL8_BACCE Putative uncharacterized protein OS=Bacillus
cereus AH1134 GN=BCAH1134_2438 PE=4 SV=1
Length = 232

Score = 35.4 bits (80), Expect = 3.2
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Frame = +1

Query: 169 HVANKRDSHSIPQKRRSSQTKTQ*IDS*LLEPISLKKLESFCSEESHVIHQHFEARLQAM 348
HVA +R++++ P KR + K Q LL+P + +K +S E V+ +H E +++ +
Sbjct: 44 HVAKRREANATPDKRVGTPKKAQGTKP-LLQPQNKEKAKSEPPELKPVVIEHIE-KVETL 101

Query: 349 AWLGKVSLGNFGD-------IAGAVTKISESVKNIEK 438
K L N D VT+I E +KNI++
Sbjct: 102 DVSWKEQLNNIFDEKDVLLKELSEVTEIYEELKNIKE 138