DK960860 |
Clone id |
TST39A01NGRL0008_I20 |
Library |
TST39 |
Length |
663 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_I20. 5' end sequence. |
Accession |
DK960860 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1354Contig1 |
Sequence |
GCTAGAACTCCGCAATGCAGCGGCTAGCCAGATGATCCACCATTATTCTACAAAGCTTGG TGATCTATCTCGGCGAAATTCCTCAGATGAAGTGTCAAGTATTTGGATCTGTGTGCGATG TCGAAGAAAAGCGATCAACAGGTTTACCTTTCGTGCTCTAACTTACTGCATGTGGCCAAC AAGCGCGACTCTCACTCAATCCCGCAGAAGCGTCGAAGCTCGCAGACAAAAACCCAGTAG ATAGACTCCTAGCTTCTCGAACCCATCTCCTTAAAAAAACTTGAATCCTTCTGCTCCGAA GAATCTCACGTAATCCATCAACATTTTGAGGCTCGTCTGCAGGCAATGGCATGGCTCGGT AAGGTGTCGTTGGGAAACTTTGGTGACATTGCTGGAGCTGTCACAAAGATCAGTGAAAGT GTCAAAAACATCGAGAAAAACTTTGATTCTGTGCTTGGATTTGATGAGCGAGGCAAATCT AACGACGAAGCCCAGACTTCCAGCACTGAGAAACTGTCATTATTCGAACCTGTTTTTGCT TTTGTTGGCCAGAAAGAAGCATCATAGGAAAGTGATGTAGCAGATCCAGAGGATACAATC TCAAGTCCTGCCAAAGATGAAACGTCGAGTCCTAGCAAAGACAACAATGTTACTCCTGAT TCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q0WVL7 |
Definition |
sp|Q0WVL7|GOGC5_ARATH Golgin candidate 5 OS=Arabidopsis thaliana |
Align length |
101 |
Score (bit) |
75.9 |
E-value |
2.0e-13 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q6AT30 |
Definition |
tr|Q6AT30|Q6AT30_ORYSJ Os05g0559900 protein OS=Oryza sativa subsp. japonica |
Align length |
101 |
Score (bit) |
81.6 |
E-value |
4.0e-14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960860|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0008_I20, 5' (663 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q6AT30|Q6AT30_ORYSJ Os05g0559900 protein OS=Oryza sativa subs... 82 4e-14 tr|B8AWQ0|B8AWQ0_ORYSI Putative uncharacterized protein OS=Oryza... 82 4e-14 tr|A3B6R4|A3B6R4_ORYSJ Putative uncharacterized protein OS=Oryza... 82 4e-14 tr|Q2HU52|Q2HU52_MEDTR TRNA-binding arm; t-snare OS=Medicago tru... 72 2e-11 tr|A7QER6|A7QER6_VITVI Chromosome chr16 scaffold_86, whole genom... 68 4e-10 tr|A9TJQ1|A9TJQ1_PHYPA Predicted protein OS=Physcomitrella paten... 62 4e-08 tr|Q9TVY5|Q9TVY5_CAEEL Protein Y48A6B.11a, partially confirmed b... 36 2.5 tr|Q7YSJ2|Q7YSJ2_CAEEL Protein Y48A6B.11b, partially confirmed b... 36 2.5 tr|B0X3M0|B0X3M0_CULQU Microtubule binding protein OS=Culex quin... 36 2.5 tr|B5UTL8|B5UTL8_BACCE Putative uncharacterized protein OS=Bacil... 35 3.2 tr|B8LLM2|B8LLM2_PICSI Putative uncharacterized protein OS=Picea... 35 4.1 tr|A6RJT9|A6RJT9_BOTFB Putative uncharacterized protein OS=Botry... 35 4.1 tr|B0CU27|B0CU27_LACBS Predicted protein OS=Laccaria bicolor (st... 35 5.5
>tr|Q6AT30|Q6AT30_ORYSJ Os05g0559900 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0001A14.17 PE=2 SV=1 Length = 1032
Score = 81.6 bits (200), Expect = 4e-14 Identities = 44/101 (43%), Positives = 62/101 (61%), Gaps = 4/101 (3%) Frame = +1
Query: 352 WLGKVSLGNFGDIAGAVTKISESVKNIEKNFDSVLGFDERGKSNDE----AQTSSTEKLS 519 W GKVSLG DIAGAV KISESVKNIEKNFDS LG +E K +DE + S+++++ Sbjct: 4 WSGKVSLGGLQDIAGAVNKISESVKNIEKNFDSALGLEE--KRDDEEGSGSHASNSDRIG 61
Query: 520 LFEPVFAFVGQKEAS*ESDVADPEDTISSPAKDETSSPSKD 642 F PV AF+G ++ ++ + S +++ S S + Sbjct: 62 FFNPVMAFMGNNGEEDSAEASEKQQPPKSTTAEQSQSASTE 102
>tr|B8AWQ0|B8AWQ0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_20957 PE=4 SV=1 Length = 1032
Score = 81.6 bits (200), Expect = 4e-14 Identities = 44/101 (43%), Positives = 62/101 (61%), Gaps = 4/101 (3%) Frame = +1
Query: 352 WLGKVSLGNFGDIAGAVTKISESVKNIEKNFDSVLGFDERGKSNDE----AQTSSTEKLS 519 W GKVSLG DIAGAV KISESVKNIEKNFDS LG +E K +DE + S+++++ Sbjct: 4 WSGKVSLGGLQDIAGAVNKISESVKNIEKNFDSALGLEE--KRDDEEGSGSHASNSDRIG 61
Query: 520 LFEPVFAFVGQKEAS*ESDVADPEDTISSPAKDETSSPSKD 642 F PV AF+G ++ ++ + S +++ S S + Sbjct: 62 FFNPVMAFMGNNGEEDSAEASEKQQPPKSTTAEQSQSASTE 102
>tr|A3B6R4|A3B6R4_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_018736 PE=4 SV=1 Length = 1089
Score = 81.6 bits (200), Expect = 4e-14 Identities = 44/101 (43%), Positives = 62/101 (61%), Gaps = 4/101 (3%) Frame = +1
Query: 352 WLGKVSLGNFGDIAGAVTKISESVKNIEKNFDSVLGFDERGKSNDE----AQTSSTEKLS 519 W GKVSLG DIAGAV KISESVKNIEKNFDS LG +E K +DE + S+++++ Sbjct: 4 WSGKVSLGGLQDIAGAVNKISESVKNIEKNFDSALGLEE--KRDDEEGSGSHASNSDRIG 61
Query: 520 LFEPVFAFVGQKEAS*ESDVADPEDTISSPAKDETSSPSKD 642 F PV AF+G ++ ++ + S +++ S S + Sbjct: 62 FFNPVMAFMGNNGEEDSAEASEKQQPPKSTTAEQSQSASTE 102
>tr|Q2HU52|Q2HU52_MEDTR TRNA-binding arm; t-snare OS=Medicago truncatula GN=MtrDRAFT_AC149489g2v2 PE=4 SV=1 Length = 992
Score = 72.4 bits (176), Expect = 2e-11 Identities = 44/97 (45%), Positives = 59/97 (60%), Gaps = 10/97 (10%) Frame = +1
Query: 346 MAWLG-KVSLGNFGDIAGAVTKISESVKNIEKNFDSVLGFDER---GKSNDEAQTSS--- 504 MAW K + GNF D+AGAV K+ ESVK+IEKNFD+ LGF+E+ +N++A SS Sbjct: 1 MAWFNAKNAWGNFPDLAGAVNKLQESVKSIEKNFDNALGFEEKDGESSNNEQASESSGSW 60
Query: 505 ---TEKLSLFEPVFAFVGQKEAS*ESDVADPEDTISS 606 T+ +LF PV AF+G K E D + + I S Sbjct: 61 PIPTDGKALFNPVLAFMGNKG---EEDSEETSENIES 94
>tr|A7QER6|A7QER6_VITVI Chromosome chr16 scaffold_86, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00037126001 PE=4 SV=1 Length = 947
Score = 68.2 bits (165), Expect = 4e-10 Identities = 34/49 (69%), Positives = 38/49 (77%), Gaps = 1/49 (2%) Frame = +1
Query: 346 MAWL-GKVSLGNFGDIAGAVTKISESVKNIEKNFDSVLGFDERGKSNDE 489 MAW GKVSLG F D+AGAV K+SESVKNIEKNFDS LGF+E+ E Sbjct: 1 MAWFSGKVSLGGFPDLAGAVNKLSESVKNIEKNFDSALGFEEKSDPGGE 49
>tr|A9TJQ1|A9TJQ1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_170472 PE=4 SV=1 Length = 799
Score = 61.6 bits (148), Expect = 4e-08 Identities = 44/106 (41%), Positives = 59/106 (55%), Gaps = 4/106 (3%) Frame = +1
Query: 346 MAWLGKVSLGNFGDIAGAVTKISESVKNIEKNFDSVLGFDERGKSNDEAQTSSTEKLSLF 525 MAWLG ++ +F AGAVTK+SESVKNIEKNFDS LGF+ S +A +TE SL Sbjct: 1 MAWLGNFTVSDF---AGAVTKLSESVKNIEKNFDSALGFESVEGSGRDAGVRATEVGSLD 57
Query: 526 EPVFAFVGQK----EAS*ESDVADPEDTISSPAKDETSSPSKDNNV 651 Q ++S E+ ++ E ISS ++ P D+ V Sbjct: 58 AWPHVVETQSSTLPDSSTEAGISGKEALISSVRENR---PGSDDEV 100
>tr|Q9TVY5|Q9TVY5_CAEEL Protein Y48A6B.11a, partially confirmed by transcript evidence OS=Caenorhabditis elegans GN=rsa-2 PE=2 SV=1 Length = 947
Score = 35.8 bits (81), Expect = 2.5 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 8/96 (8%) Frame = +1
Query: 391 AGAVTKISESVKNIEKNFDSVLGFDERGKSNDEAQTSSTEKLSLFEPVFAFVG------- 549 +G V+ SES + + L ++ + + EAQ S +E + L PV + V Sbjct: 548 SGRVSLDSESARRLSAGLSHYLEQVKKERESMEAQESESESMELEIPVVSEVSVTTESEN 607
Query: 550 -QKEAS*ESDVADPEDTISSPAKDETSSPSKDNNVT 654 ++ S SD PE ++S +++S S+D N T Sbjct: 608 LEEVVSEHSDSKSPETLVASDNGEDSSGGSEDPNAT 643
>tr|Q7YSJ2|Q7YSJ2_CAEEL Protein Y48A6B.11b, partially confirmed by transcript evidence OS=Caenorhabditis elegans GN=rsa-2 PE=2 SV=1 Length = 949
Score = 35.8 bits (81), Expect = 2.5 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 8/96 (8%) Frame = +1
Query: 391 AGAVTKISESVKNIEKNFDSVLGFDERGKSNDEAQTSSTEKLSLFEPVFAFVG------- 549 +G V+ SES + + L ++ + + EAQ S +E + L PV + V Sbjct: 550 SGRVSLDSESARRLSAGLSHYLEQVKKERESMEAQESESESMELEIPVVSEVSVTTESEN 609
Query: 550 -QKEAS*ESDVADPEDTISSPAKDETSSPSKDNNVT 654 ++ S SD PE ++S +++S S+D N T Sbjct: 610 LEEVVSEHSDSKSPETLVASDNGEDSSGGSEDPNAT 645
>tr|B0X3M0|B0X3M0_CULQU Microtubule binding protein OS=Culex quinquefasciatus GN=CpipJ_CPIJ013368 PE=4 SV=1 Length = 1044
Score = 35.8 bits (81), Expect = 2.5 Identities = 23/88 (26%), Positives = 42/88 (47%) Frame = +1
Query: 397 AVTKISESVKNIEKNFDSVLGFDERGKSNDEAQTSSTEKLSLFEPVFAFVGQKEAS*ESD 576 AV +E N EK D +L DEA+ + T L + + VG+++ E Sbjct: 820 AVAAATEEAAN-EKEIDRLLDEWHSEVKADEAEEAETADADLEKKLEKVVGEEKTEEEPP 878
Query: 577 VADPEDTISSPAKDETSSPSKDNNVTPD 660 + E+ +++PA++ S + ++ TPD Sbjct: 879 AKEDEEPVAAPAEEAEPSAATTSDQTPD 906
>tr|B5UTL8|B5UTL8_BACCE Putative uncharacterized protein OS=Bacillus cereus AH1134 GN=BCAH1134_2438 PE=4 SV=1 Length = 232
Score = 35.4 bits (80), Expect = 3.2 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 7/97 (7%) Frame = +1
Query: 169 HVANKRDSHSIPQKRRSSQTKTQ*IDS*LLEPISLKKLESFCSEESHVIHQHFEARLQAM 348 HVA +R++++ P KR + K Q LL+P + +K +S E V+ +H E +++ + Sbjct: 44 HVAKRREANATPDKRVGTPKKAQGTKP-LLQPQNKEKAKSEPPELKPVVIEHIE-KVETL 101
Query: 349 AWLGKVSLGNFGD-------IAGAVTKISESVKNIEK 438 K L N D VT+I E +KNI++ Sbjct: 102 DVSWKEQLNNIFDEKDVLLKELSEVTEIYEELKNIKE 138
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